├── .gitignore ├── README.md ├── app-admin └── eselect │ ├── ChangeLog │ ├── Manifest │ ├── eselect-1.3.7-r100.ebuild │ ├── files │ └── eselect-alternatives.patch │ └── metadata.xml ├── app-benchmarks ├── btl │ ├── ChangeLog │ ├── btl-9999.ebuild │ └── metadata.xml └── numbench │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ ├── numbench-0.2.ebuild │ └── numbench-9999.ebuild ├── app-doc ├── blacs-docs │ ├── ChangeLog │ ├── Manifest │ ├── blacs-docs-1.1.ebuild │ └── metadata.xml ├── blas-docs │ ├── ChangeLog │ ├── Manifest │ ├── blas-docs-3.3.ebuild │ └── metadata.xml ├── lapack-docs │ ├── ChangeLog │ ├── Manifest │ ├── lapack-docs-3.3-r1.ebuild │ └── metadata.xml ├── root-docs │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── root-docs-5.34.01-makehtml.patch │ ├── metadata.xml │ ├── root-docs-5.34.09.ebuild │ └── root-docs-9999.ebuild └── scalapack-docs │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── scalapack-docs-2.0.ebuild ├── app-forensics └── vine │ ├── ChangeLog │ ├── Manifest │ ├── files │ ├── vine-1.0-binutils.patch │ ├── vine-1.0-gcc46.patch │ ├── vine-1.0-install.patch │ └── vine-1.0-ocamlgraph182.patch │ ├── metadata.xml │ └── vine-1.0.ebuild ├── app-portage └── g-octave │ ├── ChangeLog │ ├── g-octave-9999.ebuild │ └── metadata.xml ├── app-text ├── dgs │ ├── ChangeLog │ ├── Manifest │ ├── dgs-0.5.10-r2.ebuild │ ├── files │ │ ├── 0.5.10-workaround-include-in-comments.patch │ │ ├── dgs-0.5.10-gcc-3.4.diff │ │ ├── dgs-0.5.10-gs-time_.h-gentoo.diff │ │ ├── dgs-0.5.10-tcpd-gentoo.diff │ │ └── dgs-fix-as-needed.patch │ └── metadata.xml └── jabref │ ├── ChangeLog │ ├── Manifest │ ├── jabref-2.10_beta.ebuild │ ├── jabref-2.9.2-r1.ebuild │ ├── jabref-2.9.2.ebuild │ └── metadata.xml ├── app-vim ├── freefem++-syntax │ ├── ChangeLog │ ├── Manifest │ ├── freefem++-syntax-20081108-r1.ebuild │ └── metadata.xml └── vim-gromacs │ ├── ChangeLog │ ├── metadata.xml │ └── vim-gromacs-9999.ebuild ├── dev-cpp ├── eigen │ ├── ChangeLog │ ├── Manifest │ ├── eigen-3.1.4.ebuild │ ├── eigen-3.2.0.ebuild │ ├── eigen-9999.ebuild │ └── metadata.xml ├── growler-arch │ ├── ChangeLog │ ├── Manifest │ ├── growler-arch-0.3.7.1.ebuild │ ├── growler-arch-0.3.7.ebuild │ └── metadata.xml ├── growler-core │ ├── ChangeLog │ ├── Manifest │ ├── growler-core-0.3.7.ebuild │ └── metadata.xml ├── growler-link │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── 0.3.7-gcc4.7.patch │ │ └── 0.3.7-gcc4.patch │ ├── growler-link-0.3.7.ebuild │ └── metadata.xml ├── growler-math │ ├── ChangeLog │ ├── Manifest │ ├── growler-math-0.3.4.1.ebuild │ └── metadata.xml ├── growler-thread │ ├── ChangeLog │ ├── Manifest │ ├── growler-thread-0.3.4.ebuild │ └── metadata.xml └── growler │ ├── ChangeLog │ ├── growler-0.3.8.2.ebuild │ ├── growler-0.3.8.ebuild │ └── metadata.xml ├── dev-db └── cppdb │ ├── ChangeLog │ ├── Manifest │ ├── cppdb-0.3.1-r1.ebuild │ └── metadata.xml ├── dev-java ├── fits │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── 01-Use-getResource-to-access-CompressTest-data-for-unit.patch │ │ ├── 02-Update-ArrayFuncsTest.java-to-JUnit-4.patch │ │ ├── README.Gentoo │ │ └── build.xml │ ├── fits-1.11.0.ebuild │ └── metadata.xml ├── flexdock │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── flexdock-1.1.1-nodemo.patch │ │ └── flexdock-1.2.3-nodemo.patch │ ├── flexdock-1.1.1.ebuild │ ├── flexdock-1.2.3.ebuild │ └── metadata.xml ├── gluegen │ ├── ChangeLog │ ├── Manifest │ ├── gluegen-1_p20080421.ebuild │ ├── gluegen-2.0_rc8.ebuild │ └── metadata.xml ├── hdf-java │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── hdf-java-2.9-shared.patch │ │ └── hdfview.xml │ ├── hdf-java-2.9.ebuild │ └── metadata.xml ├── jcip-annotations │ ├── ChangeLog │ ├── Manifest │ ├── jcip-annotations-1.0-r1.ebuild │ └── metadata.xml ├── jeuclid-core │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── jeuclid-core-no-freehep.patch │ ├── jeuclid-core-3.1.8.ebuild │ ├── jeuclid-core-3.1.9.ebuild │ └── metadata.xml ├── jgraphx │ ├── ChangeLog │ ├── Manifest │ ├── jgraphx-1.4.1.0.ebuild │ ├── jgraphx-1.8.0.6.ebuild │ └── metadata.xml ├── jhealpix │ ├── ChangeLog │ ├── Manifest │ ├── jhealpix-3.11.ebuild │ └── metadata.xml ├── jlatexmath-fop │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── jlatexmath-fop-1.0.2-fixpaths.patch │ │ └── version.xml │ ├── jlatexmath-fop-1.0.2.ebuild │ └── metadata.xml ├── jlatexmath │ ├── ChangeLog │ ├── Manifest │ ├── jlatexmath-1.0.2.ebuild │ └── metadata.xml ├── joda-convert │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── 1.2-build.xml │ ├── joda-convert-1.2.ebuild │ └── metadata.xml ├── joda-time │ ├── ChangeLog │ ├── Manifest │ ├── joda-time-2.1.ebuild │ └── metadata.xml ├── jogl │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── 1.1.0 │ │ │ ├── fix-solaris-compiler.patch │ │ │ └── uncouple-gluegen.patch │ ├── jogl-1.1.1.ebuild │ ├── jogl-2.0_rc8-r1.ebuild │ └── metadata.xml ├── jrosetta │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── api-build.xml │ │ ├── build.xml │ │ └── engine-build.xml │ ├── jrosetta-1.0.2.ebuild │ ├── jrosetta-1.0.4.ebuild │ └── metadata.xml ├── netcdf │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── netcdf-4.2.ebuild ├── scirenderer │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── scirenderer-1.1.0.ebuild └── vecmath │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── vecmath-1.5.1.ebuild ├── dev-lang ├── berkeley_upc │ ├── ChangeLog │ ├── Manifest │ ├── berkeley_upc-2.16.2.ebuild │ └── metadata.xml ├── berkeley_upc_translator │ ├── ChangeLog │ ├── Manifest │ ├── berkeley_upc_translator-2.16.2.ebuild │ └── metadata.xml ├── ispc │ ├── ChangeLog │ ├── ispc-9999.ebuild │ └── metadata.xml ├── julia │ ├── ChangeLog │ ├── files │ │ ├── 63julia-gentoo.el │ │ └── julia-nopatchelf.patch │ ├── julia-9999.ebuild │ └── metadata.xml ├── path64 │ ├── ChangeLog │ ├── metadata.xml │ └── path64-9999.ebuild ├── pgi │ ├── Manifest │ ├── files │ │ ├── pgi-13.5-glibc.patch │ │ └── pgi-13.5-terminal.patch │ ├── metadata.xml │ └── pgi-13.5.ebuild └── vtune │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── vtune-13.1.10.298370.ebuild ├── dev-libs ├── asmjit │ ├── ChangeLog │ ├── Manifest │ ├── asmjit-1.0_beta4.ebuild │ ├── files │ │ └── asmjit-test.patch │ └── metadata.xml ├── double-conversion │ ├── ChangeLog │ ├── Manifest │ ├── double-conversion-1.1.1.ebuild │ ├── files │ │ └── double-conversion-1.1.1-scons.patch │ └── metadata.xml ├── fortrancl │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── fortrancl-0.1_alpha3-gentoo.patch │ ├── fortrancl-0.1_alpha3.ebuild │ └── metadata.xml ├── libcuda │ ├── ChangeLog │ ├── files │ │ ├── 0001-Fix-detection-of-nouveau-in-case-its-builtin.patch │ │ ├── 0002-Fix-install-target-for-gdev-lib-userspace.patch │ │ ├── 0003-Fix-install-target-for-gdev-lib-userspace-part2.patch │ │ ├── 0004-Respect-extra-CFLAGS-and-LDFLAGS.patch │ │ └── 0005-Fix-install-target-for-cuda-lib.patch │ ├── libcuda-9999.ebuild │ └── metadata.xml ├── libgdev │ ├── ChangeLog │ ├── files │ │ ├── 0001-Fix-detection-of-nouveau-in-case-its-builtin.patch │ │ ├── 0002-Fix-install-target-for-gdev-lib-userspace.patch │ │ ├── 0003-Fix-install-target-for-gdev-lib-userspace-part2.patch │ │ └── 0004-Respect-extra-CFLAGS-and-LDFLAGS.patch │ ├── libgdev-9999.ebuild │ └── metadata.xml ├── libpfm │ ├── ChangeLog │ ├── Manifest │ ├── libpfm-4.3.0.ebuild │ └── metadata.xml ├── libunzip │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── libunzip-5.52-CVE-2008-0888.patch │ │ ├── libunzip-5.52-Makefile.patch │ │ └── libunzip-5.52-no-exec-stack.patch │ ├── libunzip-5.52.ebuild │ └── metadata.xml ├── papi │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── papi-5.1.0.2.ebuild └── simclist │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── simclist-1.6.ebuild ├── dev-ml ├── gsl-ocaml │ ├── ChangeLog │ ├── Manifest │ ├── gsl-ocaml-1.10.2.ebuild │ └── metadata.xml ├── lacaml │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── API.odocl │ ├── lacaml-7.0.3.ebuild │ └── metadata.xml ├── mlgmpidl │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── mlgmpidl-1.1-mpfr-3_compat.patch │ ├── metadata.xml │ └── mlgmpidl-1.1.ebuild ├── ocamlgraph │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── ocamlgraph-makefile.patch │ ├── metadata.xml │ └── ocamlgraph-1.8.2.ebuild └── zarith │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── zarith-1.1.ebuild ├── dev-perl ├── BTLib │ ├── BTLib-0.19.ebuild │ ├── ChangeLog │ ├── Manifest │ └── metadata.xml ├── Bio-BigFile │ ├── Bio-BigFile-1.06.ebuild │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── Build.PL.patch │ └── metadata.xml ├── Bio-DB-Das-Chado │ ├── Bio-DB-Das-Chado-0.32.ebuild │ ├── ChangeLog │ ├── Manifest │ └── metadata.xml ├── DBIx-DBStag │ ├── ChangeLog │ ├── DBIx-DBStag-0.12.ebuild │ ├── Manifest │ └── metadata.xml ├── Lab-Instrument │ ├── ChangeLog │ ├── Lab-Instrument-2.01.ebuild │ ├── Manifest │ └── metadata.xml ├── Lab-Tools │ ├── ChangeLog │ ├── Lab-Tools-1.4.ebuild │ ├── Manifest │ └── metadata.xml ├── Lab-VISA │ ├── ChangeLog │ ├── Lab-VISA-2.06.ebuild │ ├── Manifest │ └── metadata.xml ├── Log-Cabin │ ├── ChangeLog │ ├── Log-Cabin-0.06.ebuild │ ├── Manifest │ └── metadata.xml ├── Text-ParseWords │ ├── ChangeLog │ ├── Manifest │ ├── Text-ParseWords-3.27.ebuild │ └── metadata.xml ├── Time-Progress │ ├── ChangeLog │ ├── Manifest │ ├── Time-Progress-1.7.ebuild │ └── metadata.xml ├── go-db-perl │ ├── Manifest │ ├── go-db-perl-0.04.ebuild │ └── metadata.xml ├── go-perl │ ├── ChangeLog │ ├── Manifest │ ├── go-perl-0.13.ebuild │ └── metadata.xml └── opal-client │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── opal-client-1.9.2.ebuild ├── dev-python ├── Forthon │ ├── ChangeLog │ ├── Forthon-0.8.11.ebuild │ ├── Manifest │ ├── files │ │ └── Forthon-0.8.11-fix_options_parser.patch │ └── metadata.xml ├── GOGrapher │ ├── ChangeLog │ ├── GOGrapher-9999.ebuild │ └── metadata.xml ├── RecSQL │ ├── ChangeLog │ ├── RecSQL-9999.ebuild │ └── metadata.xml ├── astlib │ ├── ChangeLog │ ├── Manifest │ ├── astlib-0.7.0.ebuild │ └── metadata.xml ├── astropy │ ├── ChangeLog │ ├── astropy-9999.ebuild │ └── metadata.xml ├── astropysics │ ├── ChangeLog │ ├── astropysics-9999.ebuild │ └── metadata.xml ├── coards │ ├── ChangeLog │ ├── Manifest │ ├── coards-1.0.5.ebuild │ └── metadata.xml ├── coords │ ├── ChangeLog │ ├── Manifest │ ├── coords-0.37.ebuild │ └── metadata.xml ├── cosmocalc │ ├── ChangeLog │ ├── Manifest │ ├── cosmocalc-0.1.2-r1.ebuild │ └── metadata.xml ├── dimensionful │ ├── ChangeLog │ ├── dimensionful-9999.ebuild │ └── metadata.xml ├── emcee │ ├── ChangeLog │ ├── Manifest │ ├── emcee-1.2.0.ebuild │ └── metadata.xml ├── ffc │ ├── ChangeLog │ ├── Manifest │ ├── ffc-1.2.0.ebuild │ └── metadata.xml ├── ffnet │ ├── ChangeLog │ ├── Manifest │ ├── ffnet-0.6.2.ebuild │ └── metadata.xml ├── fiat │ ├── ChangeLog │ ├── Manifest │ ├── fiat-1.1.ebuild │ └── metadata.xml ├── go-parser │ ├── ChangeLog │ ├── Manifest │ ├── go-parser-9999.ebuild │ └── metadata.xml ├── healpy │ ├── ChangeLog │ ├── Manifest │ ├── healpy-1.6.2.ebuild │ └── metadata.xml ├── inference │ ├── ChangeLog │ ├── Manifest │ ├── inference-0.4.ebuild │ └── metadata.xml ├── instant │ ├── ChangeLog │ ├── Manifest │ ├── instant-1.2.0.ebuild │ └── metadata.xml ├── meshpy │ ├── ChangeLog │ ├── Manifest │ ├── meshpy-2013.1.2.ebuild │ └── metadata.xml ├── numpydoc │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── numpydoc-0.4.ebuild ├── omniorbpy │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── omniorbpy-3.4.ebuild ├── opal-client │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── opal-client-2.4.1.ebuild ├── pyhdf │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── pyhdf-0.8.3.ebuild ├── pymvpa │ ├── ChangeLog │ ├── metadata.xml │ └── pymvpa-0.4.4.ebuild ├── pysolar │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── pysolar-0.5.ebuild ├── pysparse │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── pysparse-1.1-setup.patch │ │ ├── pysparse-1.1-superlu3.patch │ │ ├── pysparse-1.1.1-setup.patch │ │ └── pysparse-1.1.1-superlu3.patch │ ├── metadata.xml │ └── pysparse-1.1.1-r1.ebuild ├── pythoncgns │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── pythoncgns-2009.10.30.ebuild ├── pythonocc │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── pythonocc-0.5.ebuild ├── theano │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── theano-0.6.0_rc3.ebuild ├── ufl │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── ufl-0.5.4.ebuild └── viper │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── viper-1.0.1.ebuild ├── dev-tcltk ├── img_rotate │ ├── ChangeLog │ ├── Manifest │ ├── img_rotate-1.1.ebuild │ └── metadata.xml └── togl │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── togl-1.7-r1.ebuild ├── dev-util ├── VampirTrace │ ├── Manifest │ ├── VampirTrace-5.14.3.ebuild │ └── metadata.xml ├── amdapp │ ├── Manifest │ ├── amdapp-2.8.ebuild │ └── metadata.xml ├── ccache │ ├── ChangeLog │ ├── Manifest │ ├── ccache-3.1.9-r2.ebuild │ ├── files │ │ ├── ccache-3.1.7-no-perl.patch │ │ ├── ccache-3.1.9-test-gcc-4.8.patch │ │ └── ccache-config-2 │ └── metadata.xml ├── f90cache │ ├── ChangeLog │ ├── Manifest │ ├── f90cache-0.94.ebuild │ └── metadata.xml ├── intel-ocl-sdk │ ├── Manifest │ ├── intel-ocl-sdk-3.0.67279.ebuild │ └── metadata.xml ├── ndiff │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── ndiff-2.00.ebuild └── smartgit │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── smartgit-1.0.2.ebuild ├── docs ├── meetings │ └── sci-electronics-201010-agenda └── proj │ ├── blas-lapack.xml │ ├── contrib.xml │ ├── index.xml │ └── linalg.xml ├── eclass ├── alternatives-2.eclass ├── emboss.eclass ├── intel-sdp.eclass ├── mpi.eclass └── numeric.eclass ├── licenses ├── AURA ├── Artistic-Manatee ├── CeCILL-1.1 ├── CeCILL-2.0 ├── ECL-2.0 ├── Eisen ├── FLI-Jena ├── GRL ├── HDecodeCambridge ├── HSL ├── HTKCambridge ├── Intel-SDP ├── LNLL-BSD ├── MGLTOOLS ├── NOSA ├── OBO-Edit ├── PGI ├── PMEL-FERRET ├── Tablet ├── UTPackages ├── XVIEW ├── blasr ├── cdfplayer ├── chimera ├── direx ├── estscan ├── gDEBugger ├── kash ├── ligplot+ ├── mavid ├── mddnmr ├── merlin ├── mgltools ├── modeller ├── netCDF ├── ni-visa ├── nmrpipe ├── opal ├── petsc ├── phaser ├── phaser-com ├── phenix ├── phrap ├── pydap ├── rosetta-academic ├── rosetta-commercial ├── signalp ├── smartgit ├── tmhmm ├── unio └── vampir ├── media-gfx ├── PhiloGL │ ├── ChangeLog │ ├── Manifest │ ├── PhiloGL-1.4.3.ebuild │ └── metadata.xml ├── brlcad │ ├── ChangeLog │ ├── Manifest │ ├── brlcad-7.20.4.ebuild │ ├── brlcad-7.22.0.ebuild │ ├── brlcad-9999.ebuild │ ├── files │ │ ├── brlcad-7.18.4-libpng15.patch │ │ └── brlcad-7.20.4-cmake.patch │ └── metadata.xml └── librecad │ ├── ChangeLog │ ├── Manifest │ ├── librecad-1.0.3.ebuild │ ├── librecad-2.0.0_rc1.ebuild │ ├── librecad-9999.ebuild │ └── metadata.xml ├── media-libs ├── OpenMOIV │ ├── Manifest │ ├── OpenMOIV-1.0.3a.ebuild │ └── metadata.xml ├── avbin-bin │ ├── ChangeLog │ ├── Manifest │ ├── avbin-bin-7.ebuild │ └── metadata.xml └── libgfx │ ├── ChangeLog │ ├── Manifest │ ├── files │ └── 1.1.0-gcc4.3.patch │ ├── libgfx-1.1.0.ebuild │ └── metadata.xml ├── metadata ├── .gitignore ├── layout.conf └── news │ └── 2010-11-04-octave-forge-removed │ └── 2010-11-04-octave-forge-removed.en.txt ├── net-firewall └── gcb │ ├── ChangeLog │ ├── Manifest │ ├── files │ └── gcb-1.5.6-shared.patch │ ├── gcb-1.5.6.ebuild │ └── metadata.xml ├── net-ftp ├── bbftp-client │ ├── ChangeLog │ ├── Manifest │ ├── bbftp-client-3.2.0.ebuild │ └── metadata.xml └── bbftp-server │ ├── ChangeLog │ ├── Manifest │ ├── bbftp-server-3.2.0.ebuild │ ├── files │ ├── 3.2.0-deffixes.patch │ └── bbftpd.init.d │ └── metadata.xml ├── net-misc └── bbscp │ ├── ChangeLog │ ├── Manifest │ ├── bbscp-1.0.4.ebuild │ └── metadata.xml ├── patches └── ccp4 │ └── 6.1.2 │ ├── fix-baubles.patch │ ├── rename-rapper.patch │ ├── rename-superpose.patch │ └── rename-truncate.patch ├── perl-core └── encoding-warnings │ ├── ChangeLog │ ├── Manifest │ ├── encoding-warnings-0.11.ebuild │ └── metadata.xml ├── profiles ├── ChangeLog ├── arch.list ├── categories ├── package.mask ├── package.use.mask ├── profiles.desc ├── repo_name ├── updates │ ├── 1Q-2011 │ ├── 1Q-2012 │ ├── 2Q-2011 │ └── 3Q-2009 └── use.local.desc ├── sci-astronomy ├── astrometry │ ├── ChangeLog │ ├── Manifest │ ├── astrometry-0.43.ebuild │ ├── files │ │ ├── 0.43-as-needed.patch │ │ ├── 0.43-respect-user-flags.patch │ │ └── 0.43-system-libs.patch │ └── metadata.xml ├── bpz │ ├── ChangeLog │ ├── Manifest │ ├── bpz-1.99.3.ebuild │ └── metadata.xml ├── chealpix │ ├── ChangeLog │ ├── Manifest │ ├── chealpix-3.11.ebuild │ └── metadata.xml ├── eazy │ ├── ChangeLog │ ├── Manifest │ ├── eazy-1.00.ebuild │ ├── files │ │ └── eazy-1.00-makefile.patch │ └── metadata.xml ├── eye │ ├── ChangeLog │ ├── Manifest │ ├── eye-1.4.1.ebuild │ ├── eye-9999.ebuild │ ├── files │ │ └── eye-1.4.1-configure.patch │ └── metadata.xml ├── galfit-bin │ ├── ChangeLog │ ├── Manifest │ ├── galfit-bin-3.0.5.ebuild │ └── metadata.xml ├── healpix_cxx │ ├── ChangeLog │ ├── Manifest │ ├── healpix_cxx-3.11.ebuild │ └── metadata.xml ├── healpix_idl │ ├── ChangeLog │ ├── Manifest │ ├── healpix_idl-3.11.ebuild │ └── metadata.xml ├── lephare │ ├── ChangeLog │ ├── Manifest │ ├── lephare-2.2.ebuild │ └── metadata.xml ├── missfits │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── missfits-2.4.0-configure.patch │ ├── metadata.xml │ ├── missfits-2.4.0.ebuild │ └── missfits-9999.ebuild ├── psfex │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ ├── psfex-3.9.1-r1.ebuild │ └── psfex-9999.ebuild ├── scamp │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── scamp-1.7.0-plplot599.patch │ ├── metadata.xml │ ├── scamp-1.7.0-r2.ebuild │ └── scamp-9999.ebuild ├── sextractor │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── sextractor-configure.patch │ ├── metadata.xml │ ├── sextractor-2.8.6-r1.ebuild │ └── sextractor-9999.ebuild ├── skymaker │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── skymaker-configure.patch │ ├── metadata.xml │ ├── skymaker-3.3.3.ebuild │ └── skymaker-9999.ebuild ├── starlink-bin │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── starlink-bin-20130413.ebuild ├── stiff │ ├── ChangeLog │ ├── files │ │ └── stiff-configure.patch │ ├── metadata.xml │ └── stiff-9999.ebuild ├── stilts │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── stilts-2.5.1.ebuild ├── stuff │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── stuff-configure.patch │ ├── metadata.xml │ ├── stuff-1.19.ebuild │ └── stuff-9999.ebuild ├── swarp │ ├── ChangeLog │ ├── metadata.xml │ └── swarp-9999.ebuild ├── topcat │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── topcat-4.0.1.ebuild ├── weightwatcher │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── weightwatcher-1.8.10-configure.patch │ ├── metadata.xml │ ├── weightwatcher-1.8.10.ebuild │ └── weightwatcher-9999.ebuild ├── zebra │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── zebra-1.01.ebuild └── zpeg │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── zpeg-5.23.ebuild ├── sci-biology ├── BG7 │ ├── BG7-9999.ebuild │ └── ChangeLog ├── Gambit │ ├── ChangeLog │ ├── Gambit-0.4.145.ebuild │ ├── Manifest │ └── metadata.xml ├── OBO-Edit │ ├── ChangeLog │ ├── Manifest │ ├── OBO-Edit-2.1.0.ebuild │ ├── OBO-Edit-2.1.1.6.ebuild │ ├── files │ │ └── response.varfile │ └── metadata.xml ├── ONTO-PERL │ ├── ChangeLog │ ├── Manifest │ ├── ONTO-PERL-1.31.ebuild │ └── metadata.xml ├── YASRA │ ├── ChangeLog │ ├── Manifest │ ├── YASRA-2.32.ebuild │ └── metadata.xml ├── align_to_scf │ ├── Manifest │ ├── align_to_scf-1.06.ebuild │ ├── files │ │ └── README │ └── metadata.xml ├── amos-short │ ├── Manifest │ ├── amos-short-0.9.3.ebuild │ ├── files │ │ └── amos-2.0.8-gcc44.patch │ └── metadata.xml ├── amos │ ├── ChangeLog │ ├── amos-9999.ebuild │ ├── files │ │ └── amos.m4.patch │ └── metadata.xml ├── apollo │ ├── ChangeLog │ ├── apollo-9999.ebuild │ └── metadata.xml ├── argo-bin │ ├── ChangeLog │ ├── Manifest │ ├── argo-bin-1.0.31.ebuild │ └── metadata.xml ├── argo │ ├── Manifest │ ├── argo-1.0.24.ebuild │ └── metadata.xml ├── artemis-bin │ ├── ChangeLog │ ├── Manifest │ ├── artemis-bin-13.2.12.ebuild │ └── metadata.xml ├── artemis │ ├── ChangeLog │ ├── artemis-9999.ebuild │ └── metadata.xml ├── autoeditor │ ├── ChangeLog │ ├── Manifest │ ├── autoeditor-1.20.ebuild │ ├── files │ │ ├── Makefile.patch │ │ └── sample_expected.out │ └── metadata.xml ├── bambus │ ├── Manifest │ ├── bambus-2.33.ebuild │ ├── files │ │ ├── TigrFoundation-all-patches.patch │ │ └── goBambus.pl │ └── metadata.xml ├── bamtools │ ├── ChangeLog │ ├── bamtools-9999.ebuild │ └── metadata.xml ├── blasr │ ├── ChangeLog │ ├── blasr-9999.ebuild │ └── metadata.xml ├── brat │ ├── ChangeLog │ ├── Manifest │ ├── brat-1.1.13.ebuild │ └── metadata.xml ├── caftools │ ├── ChangeLog │ ├── Manifest │ ├── caftools-2.0.2.ebuild │ ├── files │ │ ├── Makefile.in-2.0.2.patch │ │ └── Makefile.in.patch │ └── metadata.xml ├── cap3-bin │ ├── Manifest │ ├── cap3-bin-20071221.ebuild │ └── metadata.xml ├── cdbfasta │ ├── Manifest │ ├── cdbfasta-0.1.ebuild │ └── metadata.xml ├── clover │ ├── ChangeLog │ ├── Manifest │ ├── clover-2011.10.24.ebuild │ └── metadata.xml ├── cluster │ ├── ChangeLog │ ├── Manifest │ ├── cluster-1.50-r1.ebuild │ ├── cluster-1.50.ebuild │ ├── files │ │ └── cluster-1.38-helpmenu-fix.patch │ └── metadata.xml ├── clview │ ├── Manifest │ ├── clview-0.1.ebuild │ └── metadata.xml ├── codonw │ ├── ChangeLog │ ├── Manifest │ ├── codonw-1.4.4-r1.ebuild │ └── metadata.xml ├── consed-bin │ ├── ChangeLog │ ├── Manifest │ ├── consed-bin-20.ebuild │ └── metadata.xml ├── consed │ ├── ChangeLog │ ├── Manifest │ ├── consed-20-r1.ebuild │ ├── files │ │ ├── nLine.h.patch │ │ └── nextPhredPipeline.cpp.patch │ └── metadata.xml ├── cutadapt │ ├── ChangeLog │ ├── Manifest │ ├── cutadapt-1.2.1.ebuild │ └── metadata.xml ├── dawg │ ├── ChangeLog │ ├── Manifest │ ├── dawg-1.1.1.ebuild │ ├── files │ │ └── dawg-1.1.1-gcc43.patch │ └── metadata.xml ├── embassy-cbstools │ ├── ChangeLog │ ├── Manifest │ ├── embassy-cbstools-1.0.0-r3.ebuild │ ├── files │ │ └── embassy-cbstools-1.0.0-r2.patch │ └── metadata.xml ├── embassy-domainatrix │ ├── ChangeLog │ ├── Manifest │ ├── embassy-domainatrix-0.1.0-r6.ebuild │ ├── files │ │ └── embassy-domainatrix-0.1.0-r5.patch │ └── metadata.xml ├── embassy-domalign │ ├── ChangeLog │ ├── Manifest │ ├── embassy-domalign-0.1.0-r5.ebuild │ ├── files │ │ └── embassy-domalign-0.1.0-r5.patch │ └── metadata.xml ├── embassy-domsearch │ ├── ChangeLog │ ├── Manifest │ ├── embassy-domsearch-0.1.0-r5.ebuild │ ├── files │ │ └── embassy-domsearch-0.1.0-r5.patch │ └── metadata.xml ├── embassy-emnu │ ├── ChangeLog │ ├── Manifest │ ├── embassy-emnu-1.05-r7.ebuild │ ├── files │ │ └── embassy-emnu-1.05-r7.patch │ └── metadata.xml ├── embassy-esim4 │ ├── ChangeLog │ ├── Manifest │ ├── embassy-esim4-1.0.0-r7.ebuild │ ├── files │ │ └── embassy-esim4-1.0.0-r7.patch │ └── metadata.xml ├── embassy-hmmer │ ├── ChangeLog │ ├── Manifest │ ├── embassy-hmmer-2.3.2-r4.ebuild │ ├── files │ │ └── embassy-hmmer-2.3.2-r4.patch │ └── metadata.xml ├── embassy-iprscan │ ├── ChangeLog │ ├── Manifest │ ├── embassy-iprscan-4.3.1-r2.ebuild │ ├── files │ │ └── embassy-iprscan-4.3.1-r2.patch │ └── metadata.xml ├── embassy-memenew │ ├── ChangeLog │ ├── files │ │ └── embassy-memenew-4.0.0-r1.patch │ └── metadata.xml ├── embassy-mira │ ├── ChangeLog │ ├── files │ │ └── embassy-mira-2.8.2-r2.patch │ └── metadata.xml ├── embassy-mse │ ├── ChangeLog │ ├── Manifest │ ├── embassy-mse-3.0.0.ebuild │ ├── files │ │ └── embassy-mse-3.0.0.patch │ └── metadata.xml ├── embassy-phylipnew │ ├── ChangeLog │ ├── Manifest │ ├── embassy-phylipnew-3.69.ebuild │ ├── files │ │ └── embassy-phylipnew-3.69.patch │ └── metadata.xml ├── embassy-signature │ ├── ChangeLog │ ├── Manifest │ ├── embassy-signature-0.1.0-r5.ebuild │ ├── files │ │ └── embassy-signature-0.1.0-r5.patch │ └── metadata.xml ├── embassy-structure │ ├── ChangeLog │ ├── Manifest │ ├── embassy-structure-0.1.0-r5.ebuild │ ├── files │ │ └── embassy-structure-0.1.0-r5.patch │ └── metadata.xml ├── embassy-topo │ ├── ChangeLog │ ├── Manifest │ ├── embassy-topo-2.0.0.ebuild │ ├── files │ │ └── embassy-topo-2.0.0.patch │ └── metadata.xml ├── embassy-vienna │ ├── ChangeLog │ ├── Manifest │ ├── embassy-vienna-1.7.2-r2.ebuild │ ├── files │ │ └── embassy-vienna-1.7.2-r2.patch │ └── metadata.xml ├── embassy │ ├── ChangeLog │ ├── embassy-6.3.1.ebuild │ └── metadata.xml ├── emboss │ ├── ChangeLog │ ├── Manifest │ ├── emboss-6.3.1_p4-r1.ebuild │ ├── files │ │ ├── emboss-6.3.1_p4-r1_plcol.patch │ │ └── emboss-README.Gentoo-2 │ └── metadata.xml ├── erpin │ ├── ChangeLog │ ├── Manifest │ ├── erpin-5.5b.ebuild │ ├── files │ │ └── erpincommand-5.5b.pl │ └── metadata.xml ├── est2uni │ ├── ChangeLog │ ├── Manifest │ ├── est2uni-0.27.ebuild │ ├── est2uni-9999.ebuild │ ├── files │ │ ├── 9999-est_clustering.pm.patch │ │ ├── 9999-pipe_db.pm.patch │ │ ├── 99est2uni │ │ ├── configuration.php.patch │ │ ├── est2uni │ │ ├── est_annot.pm.patch │ │ ├── est_annot_go.pm.patch │ │ ├── est_annot_psnp.pm.patch │ │ ├── est_annot_reciprocal_blast.pm.patch │ │ ├── est_clustering.pm.patch │ │ ├── est_prepro.pm.patch │ │ ├── installation_est2uni_perl.txt.patch │ │ ├── mysql_fixes.sql │ │ ├── pipe_db.pm.patch │ │ ├── tables.sql.patch │ │ └── tgicl_files.patch │ └── metadata.xml ├── estscan │ ├── ChangeLog │ ├── Manifest │ ├── estscan-3.0.3.ebuild │ └── metadata.xml ├── fastdnaml │ ├── ChangeLog │ ├── Manifest │ ├── fastdnaml-1.2.2.ebuild │ └── metadata.xml ├── fastx_toolkit │ ├── ChangeLog │ ├── Manifest │ └── fastx_toolkit-0.0.13.2.ebuild ├── gap2caf │ ├── ChangeLog │ ├── Manifest │ ├── gap2caf-2.1.0.ebuild │ └── metadata.xml ├── gbench │ ├── ChangeLog │ ├── Manifest │ ├── gbench-2.3.2.ebuild │ └── metadata.xml ├── gbrowse │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── GBrowseInstall.pm-2.39.patch │ │ ├── GBrowseInstall.pm-2.45.patch │ │ ├── destdir.patch │ │ ├── disable-gbrowse_metadb_config.pl.patch │ │ ├── fix-PNG-export.patch │ │ ├── gbrowse-slave.default │ │ ├── gbrowse-slave.init.d │ │ ├── gbrowse.conf.vhosts.d │ │ ├── gbrowse_metadb_config.pl.patch │ │ └── symlink.patch │ ├── gbrowse-2.39.ebuild │ ├── gbrowse-2.45.ebuild │ ├── gbrowse-2.48.ebuild │ └── metadata.xml ├── genepop │ ├── ChangeLog │ ├── Manifest │ ├── genepop-4.0.10.ebuild │ └── metadata.xml ├── generecon │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── 1.2.1-flags.patch │ │ ├── 1.2.1-gcc4.patch │ │ └── generecon-docfiles.patch │ ├── generecon-1.2.1-r1.ebuild │ └── metadata.xml ├── genseed │ ├── ChangeLog │ ├── Manifest │ ├── genseed-1.0.22.ebuild │ └── metadata.xml ├── grappa │ ├── ChangeLog │ ├── Manifest │ ├── grappa-2.0.ebuild │ └── metadata.xml ├── hydra-sv │ ├── ChangeLog │ ├── Manifest │ ├── hydra-sv-0.5.3.ebuild │ └── metadata.xml ├── igv │ ├── ChangeLog │ ├── igv-2.0.32.ebuild │ └── metadata.xml ├── jalview │ ├── ChangeLog │ ├── Manifest │ ├── jalview-2.6.1.ebuild │ └── metadata.xml ├── lastz │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── lastz-1.03.34-build.patch │ ├── lastz-1.03.34.ebuild │ └── metadata.xml ├── libgtextutils │ ├── ChangeLog │ ├── Manifest │ ├── libgtextutils-0.6.1.ebuild │ └── metadata.xml ├── lucy │ ├── Manifest │ ├── lucy-1.20.ebuild │ └── metadata.xml ├── manatee-igs │ ├── ChangeLog │ ├── Manifest │ ├── manatee-igs-2.23.1.ebuild │ └── metadata.xml ├── manatee-jcvi │ ├── ChangeLog │ ├── Manifest │ ├── manatee-jcvi-2.4.3.ebuild │ └── metadata.xml ├── mavid │ ├── ChangeLog │ ├── Manifest │ ├── mavid-2.0.4.ebuild │ └── metadata.xml ├── merlin │ ├── ChangeLog │ ├── Manifest │ ├── merlin-1.1.2.ebuild │ └── metadata.xml ├── mira │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── libtool.m4.patch │ │ ├── mira-3.0.0-asneeded.patch │ │ ├── mira-3.4.0.1-asneeded.patch │ │ ├── mira-3.4.0.2-boost-1.50.patch │ │ └── mira_left_clip.readpool.C.patch │ ├── metadata.xml │ ├── mira-3.4.0.1.ebuild │ ├── mira-3.4.1.1.ebuild │ ├── mira-3.9.15.ebuild │ └── mira-3.9.9.ebuild ├── miranda │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── miranda-3.3a.ebuild ├── mosaik │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ ├── mosaik-1.1.0021.ebuild │ ├── mosaik-2.1.33.ebuild │ └── mosaik-9999.ebuild ├── mrbayes │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── mb_readline_312.patch │ ├── metadata.xml │ └── mrbayes-3.1.2-r1.ebuild ├── mreps │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── mreps-2.5.ebuild ├── mrfast │ ├── Manifest │ ├── files │ │ └── mrfast-2.1.0.3-disc_buffer_overflow.patch │ ├── metadata.xml │ └── mrfast-2.1.0.3.ebuild ├── mrsfast │ ├── Manifest │ ├── metadata.xml │ └── mrsfast-2.3.0.2.ebuild ├── ncbi-tools++ │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── curl-types.patch │ │ ├── disable-testsuite-compilation.txt │ │ ├── make_install.patch │ │ ├── malloc_initialize_upstream_fix.patch │ │ ├── ncbi-tools++-9.0.0-as-needed.patch │ │ ├── ncbi-tools++-9.0.0-conf-opts.patch │ │ ├── ncbi-tools++-9.0.0-disable_test_compress.patch │ │ ├── ncbi-tools++-9.0.0-fix-order-of-libs.patch │ │ ├── report_project_settings_configure.ac.patch │ │ ├── report_project_settings_configure.patch │ │ ├── respect_CXXFLAGS_configure.ac.patch │ │ └── respect_CXXFLAGS_configure.patch │ ├── metadata.xml │ ├── ncbi-tools++-9.0.0-r1.ebuild │ └── ncbi-tools++-9.0.0.ebuild ├── nrcl │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── 110625-build.patch │ ├── metadata.xml │ └── nrcl-110625.ebuild ├── perlprimer │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── perlprimer-1.1.17.ebuild ├── proda │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── proda-1.0.ebuild ├── psx │ ├── Manifest │ ├── metadata.xml │ └── psx-0.1.ebuild ├── psychopy │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ ├── psychopy-1.75.01.ebuild │ └── psychopy-9999.ebuild ├── pybrain │ ├── ChangeLog │ ├── metadata.xml │ └── pybrain-9999.ebuild ├── quicktree │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── quicktree-1.1-r1.ebuild ├── rnaplex │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── rnaplex-0.2.ebuild ├── roche454ace2caf │ ├── Manifest │ ├── metadata.xml │ └── roche454ace2caf-20100812.ebuild ├── sclust │ ├── Manifest │ ├── metadata.xml │ └── sclust-0.1.ebuild ├── seqclean │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── seqclean-110625-build.patch │ ├── metadata.xml │ └── seqclean-110625.ebuild ├── sequin │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── sequin-20121202.ebuild ├── sff_dump │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── sff_dump-1.04.ebuild ├── signalp │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── signalp-3.0.ebuild ├── smalt-bin │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── smalt-bin-0.7.4.ebuild ├── sra_sdk │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── libs_sra_Makefile.patch │ │ ├── sra_sdk-destdir.patch │ │ └── tools_vdb-vcopy_Makefile.patch │ ├── metadata.xml │ ├── sra_sdk-2.1.6.ebuild │ ├── sra_sdk-2.1.9.ebuild │ └── sra_sdk-2.2.2a.ebuild ├── ssaha2-bin │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── ssaha2-bin-2.5.5.ebuild ├── staden │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── staden-2.0.0_beta9-ldflags.patch │ │ ├── staden-2.0.0_beta9-libpng-1.5.patch │ │ └── staden-2.0.0_beta9-zlib.patch │ ├── metadata.xml │ ├── staden-2.0.0_beta9.ebuild │ └── staden-9999.ebuild ├── swissknife │ ├── Manifest │ ├── metadata.xml │ └── swissknife-1.67.ebuild ├── symap │ ├── ChangeLog │ ├── Manifest │ └── symap-4.0.ebuild ├── tablet-bin │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── response.varfile │ ├── metadata.xml │ └── tablet-bin-1.13.05.17.ebuild ├── tclust │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── tclust-110625-build.patch │ ├── metadata.xml │ └── tclust-110625.ebuild ├── tgicl │ ├── Manifest │ ├── metadata.xml │ └── tgicl-2.1.ebuild ├── tigr-assembler │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── run_TA │ ├── metadata.xml │ └── tigr-assembler-2.0.ebuild ├── tigr-foundation-libs │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── TigrFoundation-all-patches.patch │ ├── metadata.xml │ └── tigr-foundation-libs-2.0-r1.ebuild ├── tmhmm │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── tmhmm-2.0c.ebuild ├── twinscan │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── twinscan-4.1.2.ebuild ├── wcd │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── wcd-0.6.0-impl-decl.patch │ │ └── wcd-0.6.0-ldflags.patch │ ├── metadata.xml │ └── wcd-0.6.0.ebuild └── zmsort │ ├── ChangeLog │ ├── Manifest │ ├── files │ └── zmsort-110625-build.patch │ ├── metadata.xml │ └── zmsort-110625.ebuild ├── sci-chemistry ├── GromacsWrapper │ ├── ChangeLog │ ├── GromacsWrapper-9999.ebuild │ ├── files │ │ └── 0001-Drop-chmod-hack.patch │ └── metadata.xml ├── almost │ ├── ChangeLog │ ├── Manifest │ ├── almost-1.0.3-r2.ebuild │ ├── files │ │ ├── Makefile.patch │ │ ├── configure.patch │ │ ├── configure2.patch │ │ └── gcc-4.3.patch │ └── metadata.xml ├── ambertools │ ├── ChangeLog │ ├── Manifest │ ├── ambertools-1.5-r4.ebuild │ ├── ambertools-12.ebuild │ ├── files │ │ ├── ambertools-1.5-bugfix_1-21.patch │ │ ├── ambertools-1.5-bugfix_22-27.patch │ │ ├── ambertools-1.5-bugfix_28.patch │ │ ├── ambertools-1.5-gentoo2.patch │ │ ├── ambertools-1.5-overflow.patch │ │ ├── ambertools-12-bugfix_14-26.patch │ │ └── ambertools-12-gentoo.patch │ └── metadata.xml ├── ball │ ├── ChangeLog │ ├── ball-9999.ebuild │ ├── files │ │ ├── ball-9999-libsvm.patch │ │ └── ball-9999-multilib.patch │ └── metadata.xml ├── bist │ ├── ChangeLog │ ├── Manifest │ ├── bist-0.5.1-r1.ebuild │ ├── files │ │ ├── bist-0.5.1-bracket.patch │ │ └── bist-0.5.1-install.patch │ └── metadata.xml ├── burrow-owl │ ├── ChangeLog │ ├── Manifest │ ├── burrow-owl-9999.ebuild │ ├── files │ │ ├── burrow-owl-9999-impl-dec.patch │ │ └── burrow-owl-9999-prll.patch │ └── metadata.xml ├── camshift │ ├── ChangeLog │ ├── Manifest │ ├── camshift-1.35.0.ebuild │ ├── files │ │ ├── 1.35.0-gcc47.patch │ │ └── 1.35.0-gentoo.patch │ └── metadata.xml ├── chemBuild │ ├── ChangeLog │ ├── Manifest │ ├── chemBuild-1.0.2.ebuild │ ├── chemBuild-1.0.3.ebuild │ ├── files │ │ └── chemBuild │ └── metadata.xml ├── chimera-bin │ ├── ChangeLog │ ├── Manifest │ ├── chimera-bin-1.6.2.ebuild │ ├── chimera-bin-1.8.ebuild │ └── metadata.xml ├── chooch │ ├── ChangeLog │ ├── Manifest │ ├── chooch-5.0.2-r1.ebuild │ ├── files │ │ ├── 5.0.2-Makefile.am.patch │ │ ├── 5.0.2-Makefile.patch │ │ └── 5.0.2-aclocal.patch │ └── metadata.xml ├── cnsface │ ├── ChangeLog │ ├── Manifest │ ├── cnsface-0.0.12.ebuild │ ├── files │ │ └── 0.0.12-binary.patch │ └── metadata.xml ├── concoord │ ├── ChangeLog │ ├── Manifest │ ├── concoord-2.1.2.ebuild │ ├── concoord-2.1.ebuild │ └── metadata.xml ├── coot │ ├── ChangeLog │ ├── Manifest │ ├── coot-9999.ebuild │ ├── files │ │ └── 9999-pc.patch │ └── metadata.xml ├── cs-rosetta │ ├── ChangeLog │ ├── Manifest │ ├── cs-rosetta-1.01.2009.1109.11.ebuild │ └── metadata.xml ├── curvefit │ ├── ChangeLog │ ├── Manifest │ ├── curvefit-1.40.ebuild │ └── metadata.xml ├── direx │ ├── ChangeLog │ ├── Manifest │ ├── direx-0.2.ebuild │ └── metadata.xml ├── dl_poly │ ├── ChangeLog │ ├── Manifest │ ├── dl_poly-1.9.ebuild │ ├── dl_poly-4.05.ebuild │ └── metadata.xml ├── drawxtl │ ├── ChangeLog │ ├── Manifest │ ├── drawxtl-44.ebuild │ ├── drawxtl-54.ebuild │ ├── files │ │ ├── 44-gentoo.patch │ │ ├── 54-gcc44.patch │ │ ├── 54-gentoo.patch │ │ └── 54-ldflags.patch │ └── metadata.xml ├── dssp2pdb │ ├── ChangeLog │ ├── Manifest │ ├── dssp2pdb-0.03.ebuild │ └── metadata.xml ├── freeon │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── freeon-2012.05.03-no_internal_hdf5.patch │ │ └── freeon-9999-no_internal_hdf5.patch │ ├── freeon-2012.05.03.ebuild │ ├── freeon-9999.ebuild │ └── metadata.xml ├── gamess │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── gamess-20120501.1.gentoo.patch │ │ └── gamess-qmmm-tinker-fix-idate.patch │ ├── gamess-20120501.1.ebuild │ └── metadata.xml ├── gnome-chemistry-utils │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── gnome-chemistry-utils-0.14.2-extern-c.patch │ ├── gnome-chemistry-utils-0.14.2-r1.ebuild │ ├── gnome-chemistry-utils-9999.ebuild │ └── metadata.xml ├── gromacs │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── gromacs-4.5.7-cmake-cpp-asm.patch │ ├── gromacs-4.5.9999.ebuild │ ├── gromacs-4.6.9999.ebuild │ ├── gromacs-9999.ebuild │ └── metadata.xml ├── hydronmr │ ├── ChangeLog │ ├── Manifest │ ├── hydronmr-7c.ebuild │ └── metadata.xml ├── jana2000 │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── 20071218-g77.diff │ │ └── 20071218-gfortran.diff │ ├── jana2000-20071218.ebuild │ └── metadata.xml ├── jligand │ ├── ChangeLog │ ├── Manifest │ ├── jligand-1.0.19.ebuild │ └── metadata.xml ├── ligplot+ │ ├── ChangeLog │ ├── Manifest │ ├── ligplot+-1.4.ebuild │ └── metadata.xml ├── mage │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── 6.44.060606-Makefile.patch │ │ └── digest-mage-6.44.060606 │ ├── mage-6.44.060606.ebuild │ └── metadata.xml ├── mddnmr │ ├── ChangeLog │ ├── Manifest │ ├── mddnmr-2.1.ebuild │ ├── mddnmr-2.2.ebuild │ └── metadata.xml ├── mdsctk │ ├── ChangeLog │ ├── Manifest │ ├── mdsctk-1.1.0.ebuild │ └── metadata.xml ├── mgltools-autodocktools │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── mgltools-autodocktools-1.5.6.ebuild ├── mgltools-bhtree │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── mgltools-bhtree-1.5.6.ebuild ├── mgltools-cadd │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── mgltools-cadd-1.5.6.ebuild ├── mgltools-cmolkit │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── mgltools-cmolkit-1.5.6.ebuild ├── mgltools-dejavu │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── mgltools-dejavu-1.5.6.ebuild ├── mgltools-geomutils │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── 1.5.4-gcc4.3.patch │ │ └── 1.5.4-impl-dec.patch │ ├── metadata.xml │ └── mgltools-geomutils-1.5.6.ebuild ├── mgltools-gle │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── mgltools-gle-1.5.6.ebuild ├── mgltools-mglutil │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── 1.5.4-python.patch │ ├── metadata.xml │ └── mgltools-mglutil-1.5.6.ebuild ├── mgltools-molkit │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── mgltools-molkit-1.5.6.ebuild ├── mgltools-networkeditor │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── mgltools-networkeditor-1.5.6.ebuild ├── mgltools-opengltk │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── mgltools-opengltk-1.5.6_rc2-glew.patch │ │ └── mgltools-opengltk-1.5.6_rc2-unbundle.patch │ ├── metadata.xml │ └── mgltools-opengltk-1.5.6.ebuild ├── mgltools-pmv │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── mgltools-pmv-1.5.6_rc2-code-fix.patch │ ├── metadata.xml │ └── mgltools-pmv-1.5.6.ebuild ├── mgltools-pyautodock │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── mgltools-pyautodock-1.5.6.ebuild ├── mgltools-pybabel │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── mgltools-pybabel-1.5.6.ebuild ├── mgltools-pyglf │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── mgltools-pyglf-1.5.6.ebuild ├── mgltools-qslimlib │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── 1.5.4-gcc4.3.patch │ │ └── 1.5.4-gcc4.7.patch │ ├── metadata.xml │ └── mgltools-qslimlib-1.5.6.ebuild ├── mgltools-scenario2 │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── mgltools-scenario2-1.5.6.ebuild ├── mgltools-sff │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── 1.5.4-impl-dec.patch │ ├── metadata.xml │ └── mgltools-sff-1.5.6.ebuild ├── mgltools-support │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── mgltools-support-1.5.6.ebuild ├── mgltools-symserv │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── mgltools-symserv-1.5.6.ebuild ├── mgltools-utpackages │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── 1.5.4-gcc4.3.patch │ ├── metadata.xml │ └── mgltools-utpackages-1.5.6.ebuild ├── mgltools-viewer-framework │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── mgltools-viewer-framework-1.5.6.ebuild ├── mgltools-vision │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── mgltools-vision-1.5.6.ebuild ├── mgltools-visionlib │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── mgltools-visionlib-1.5.6.ebuild ├── mgltools-volume │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── mgltools-volume-1.5.6.ebuild ├── mgltools-webservices │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── mgltools-webservices-1.5.6.ebuild ├── mgltools │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── mgltools-1.5.6.ebuild ├── mics │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── mics-1.00.2011.327.12.00.ebuild ├── modelfree │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── modelfree-4.20.ebuild ├── modeller │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── 9v5-setup.patch │ ├── metadata.xml │ └── modeller-9.12-r2.ebuild ├── mtz2hkl │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── 0.3-gentoo.patch │ ├── metadata.xml │ └── mtz2hkl-0.3.ebuild ├── mtz2sca │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── 0.3-gentoo.patch │ ├── metadata.xml │ └── mtz2sca-0.3.ebuild ├── nMOLDYN │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── nMOLDYN-3.0.10.ebuild ├── nmrpipe │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── env-nmrpipe-new │ │ └── nmrpipe-8.1.2013.218.23.09-lib.patch │ ├── metadata.xml │ └── nmrpipe-8.1.2013.218.23.09.ebuild ├── nmrview │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── README.Gentoo │ │ ├── nmrview.sh │ │ └── nmrview.sh-r1 │ ├── metadata.xml │ └── nmrview-5.2.2-r3.ebuild ├── nwchem │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── nwchem-6.1.1-adjust-dir-length.patch │ │ ├── nwchem-6.1.1-makefile.patch │ │ ├── nwchem-6.1.1-nwchemrc.patch │ │ ├── nwchem-6.1.1-python_makefile.patch │ │ └── nwchem-6.3-r1-html_doc.patch │ ├── metadata.xml │ └── nwchem-6.3-r1.ebuild ├── panav │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── panav-0.20130730.ebuild ├── phenix-bin │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── phenix-bin-1.8.2.1309.ebuild ├── polygon │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── 0612-db.patch │ ├── metadata.xml │ └── polygon-0612.ebuild ├── pymol-apbs-plugin │ ├── ChangeLog │ ├── metadata.xml │ └── pymol-apbs-plugin-9999.ebuild ├── pymol-plugins-ezviz │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── gentoo.patch │ ├── metadata.xml │ └── pymol-plugins-ezviz-1.0.2005-r1.ebuild ├── pymol-plugins-psico │ ├── ChangeLog │ ├── metadata.xml │ └── pymol-plugins-psico-9999.ebuild ├── pymol │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── pymol-9999.ebuild ├── pyquante │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── pyquante-1.6.3-r1.ebuild ├── rosetta-tools │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── rosetta-tools-3.0.ebuild ├── rosetta │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── rosetta-3.4-boinc.patch │ │ ├── rosetta-3.4-boost.patch │ │ ├── rosetta-3.4-fix-scons-warnings.patch │ │ ├── rosetta-3.4-fix-valgrind.patch │ │ ├── rosetta-3.4-gcc4.7.patch │ │ ├── rosetta-3.4-gcc4.78.patch │ │ ├── rosetta-3.4-lange-fix.patch │ │ ├── rosetta-3.4-platform.patch │ │ ├── rosetta-3.4-unbundle.patch │ │ ├── rosetta-3.4-user-settings.patch │ │ └── rosetta-3.4-zlib.patch │ ├── metadata.xml │ └── rosetta-3.4.ebuild ├── shiftx │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── 1.1-Makefile.patch │ │ └── 1.1-bfr-overflow.patch │ ├── metadata.xml │ └── shiftx-1.1.ebuild ├── shiftx2 │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── shiftx2-1.07_p20120106-java.patch │ │ └── shiftx2-1.07_p20120106-system.patch │ ├── metadata.xml │ └── shiftx2-1.07_p20120106.ebuild ├── simpson │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── 3.0.1-gentoo.patch │ │ ├── 3.0.1-type.patch │ │ ├── 3.1.0-gentoo.patch │ │ └── 3.1.2-gentoo.patch │ ├── metadata.xml │ ├── simpson-3.0.1.ebuild │ ├── simpson-3.1.0.ebuild │ └── simpson-3.1.2.ebuild ├── smmp │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── 3.0.5-flags.patch │ ├── metadata.xml │ └── smmp-3.0.5.ebuild ├── specView │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── specView │ ├── metadata.xml │ ├── specView-1.0.2.ebuild │ └── specView-1.0.3.ebuild ├── ssp │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── ssp-09.11.ebuild ├── talosn │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── talosn-4.01.2013.148.15.55-r2.ebuild ├── trajng │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── trajng-0.6.1.ebuild ├── ucsf-tools │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── ucsf-tools-9999.ebuild ├── unio │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── unio-2.0.2-r1.ebuild ├── usf-tools │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── usf-tools-9999-longline.patch │ ├── metadata.xml │ └── usf-tools-9999.ebuild ├── votca-csg │ ├── ChangeLog │ ├── metadata.xml │ └── votca-csg-9999.ebuild ├── votca-csgapps │ ├── ChangeLog │ ├── metadata.xml │ └── votca-csgapps-9999.ebuild ├── wxmacmolplt │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── wxmacmolplt-7.4.3-glew.patch │ ├── metadata.xml │ └── wxmacmolplt-7.4.3.ebuild └── xdrfile │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── xdrfile-1.1.1.ebuild ├── sci-electronics ├── player │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── player-2.0.4.ebuild ├── stage │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── stage-2.0.3-docdst-fix.patch │ ├── metadata.xml │ └── stage-2.0.3.ebuild └── tnt │ ├── ChangeLog │ ├── Manifest │ ├── files │ ├── tnt-1.2.2-bem-nmmtl.patch │ ├── tnt-1.2.2-calc.patch │ ├── tnt-1.2.2-docs.patch │ ├── tnt-1.2.2-f77.patch │ ├── tnt-1.2.2-gui.patch │ ├── tnt-1.2.2-namespaces.patch │ └── tnt-1.2.2-tkcon.patch │ ├── metadata.xml │ └── tnt-1.2.2.ebuild ├── sci-geosciences ├── cdat-lite │ ├── ChangeLog │ ├── Manifest │ ├── cdat-lite-5.2.ebuild │ ├── cdat-lite-6.0_rc2.ebuild │ ├── files │ │ ├── 5.2-impl-dec.patch │ │ └── 5.2-shared-lib.patch │ └── metadata.xml ├── congen │ ├── ChangeLog │ ├── Manifest │ ├── congen-1.6.ebuild │ └── metadata.xml ├── fullprof-bin │ ├── ChangeLog │ ├── Manifest │ ├── fullprof-bin-2012.11.ebuild │ └── metadata.xml ├── harmonics-dwf-free-noncomm │ ├── ChangeLog │ ├── Manifest │ ├── harmonics-dwf-free-noncomm-20110410-r1.ebuild │ └── metadata.xml ├── harmonics-dwf-free │ ├── ChangeLog │ ├── Manifest │ ├── harmonics-dwf-free-20110410-r1.ebuild │ ├── harmonics-dwf-free-20120302.ebuild │ └── metadata.xml ├── libtcd │ ├── ChangeLog │ ├── Manifest │ ├── libtcd-2.2.5-r1.ebuild │ ├── libtcd-2.2.5_p2.ebuild │ └── metadata.xml ├── pydap │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── pydap-3.1.ebuild ├── pydap_handlers_cdms │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── pydap_handlers_cdms-0.2.0.1.ebuild ├── pydap_handlers_csv │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── pydap_handlers_csv-0.1.1.ebuild ├── pydap_handlers_hdf5 │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── pydap_handlers_hdf5-0.1.5.ebuild ├── pydap_handlers_nca │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── pydap_handlers_nca-0.1.3.ebuild ├── pydap_handlers_netcdf │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── pydap_handlers_netcdf-0.6.1.ebuild ├── pydap_handlers_proxy │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── pydap_handlers_proxy-0.1.1.ebuild ├── pydap_handlers_sql │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── pydap_handlers_sql-0.2.1.ebuild ├── pydap_handlers_sqlite │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── pydap_handlers_sqlite-0.1.0.ebuild ├── pydap_responses_kml │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── pydap_responses_kml-0.4.5.ebuild ├── pydap_responses_matlab │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── pydap_responses_matlab-0.2.ebuild ├── pydap_responses_netcdf │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── pydap_responses_netcdf-0.1.4.ebuild ├── pydap_responses_wms │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── pydap_responses_wms-0.4.6.ebuild ├── pydap_responses_xls │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── pydap_responses_xls-0.1.2.ebuild ├── qgis │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── qgis-9999.ebuild ├── seawater │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── seawater-2.0.1.ebuild ├── swmm │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── swmm-5.0.022.ebuild ├── tappy │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── tappy-0.9.0.ebuild ├── tcd-utils │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ ├── tcd-utils-20061127.ebuild │ └── tcd-utils-20080820.ebuild └── xtide │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ ├── xtide-2.12-r1.ebuild │ └── xtide-2.13.ebuild ├── sci-libs ├── Cgraph │ ├── Cgraph-2.04.ebuild │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── Makefile.patch │ │ └── fix-src.patch │ └── metadata.xml ├── acml │ ├── ChangeLog │ ├── Manifest │ ├── acml-5.3.1.ebuild │ └── metadata.xml ├── amdlibm │ ├── ChangeLog │ ├── Manifest │ ├── amdlibm-3.0.2.ebuild │ └── metadata.xml ├── armadillo │ ├── ChangeLog │ ├── Manifest │ ├── armadillo-3.910.0.ebuild │ ├── files │ │ ├── armadillo-3.820.1-example-makefile.patch │ │ └── armadillo-3.820.1-hdf5.patch │ └── metadata.xml ├── atlas │ ├── ChangeLog │ ├── Manifest │ ├── atlas-3.10.1-r1.ebuild │ ├── files │ │ └── atlas-3.10.0-x32-support.patch │ └── metadata.xml ├── avogadro-libs │ ├── ChangeLog │ ├── Manifest │ ├── avogadro-libs-0.6.0.ebuild │ ├── files │ │ └── avogadro-libs-0.6.0-underlinking.patch │ └── metadata.xml ├── bigdft-abi │ ├── ChangeLog │ ├── Manifest │ ├── bigdft-abi-1.0.4-r1.ebuild │ └── files │ │ ├── bigdft-abi-1.0.4-CUDA_gethostname.patch │ │ └── bigdft-abi-1.0.4-tests.tar.bz2 ├── bigdft │ ├── ChangeLog │ ├── Manifest │ ├── bigdft-1.6.0-r2.ebuild │ ├── bigdft-1.7_pre12.ebuild │ ├── files │ │ ├── bigdft-1.6-tuto.1-GPUlibs-1.patch │ │ ├── bigdft-1.6-tuto.1-bigdft.pc-1.patch │ │ ├── bigdft-1.6-tuto.1-gcc-4.6.patch │ │ ├── bigdft-1.6-tuto.1-libxc_dir_include.patch │ │ ├── bigdft-1.6.0-libxc_dir_include.patch │ │ ├── bigdft-1.7-dev.12-GPUlink.patch │ │ ├── bigdft-1.7-dev.12-libxc_dir_include.patch │ │ ├── bigdft-1.7-dev.12-nolib_mods.patch │ │ └── bigdft-1.7-dev.12-tests.tar.bz2 │ └── metadata.xml ├── blas-reference │ ├── ChangeLog │ ├── Manifest │ ├── blas-reference-20120925.ebuild │ ├── blas-reference-99999999.ebuild │ └── metadata.xml ├── blastdb │ ├── ChangeLog │ ├── blastdb-9999.ebuild │ └── metadata.xml ├── bliss │ ├── ChangeLog │ ├── Manifest │ ├── bliss-0.72.ebuild │ ├── files │ │ ├── bliss-0.72-autotools.patch │ │ └── bliss-0.72-fedora.patch │ └── metadata.xml ├── calculix-ccx │ ├── ChangeLog │ ├── Manifest │ ├── calculix-ccx-2.2.ebuild │ ├── files │ │ ├── 01_ccx_2.2_Makefile.patch │ │ └── 01_ccx_2.2_lapack.patch │ └── metadata.xml ├── calculix-cgx │ ├── ChangeLog │ ├── Manifest │ ├── calculix-cgx-2.2.ebuild │ ├── files │ │ └── 01_cgx_2.2_Makefile.patch │ └── metadata.xml ├── cblas-reference │ ├── ChangeLog │ ├── Manifest │ ├── cblas-reference-20110218.ebuild │ └── metadata.xml ├── ccif │ ├── ChangeLog │ ├── Manifest │ ├── ccif-0.3.20111209.ebuild │ └── metadata.xml ├── cgnsfoam │ ├── ChangeLog │ ├── Manifest │ ├── cgnsfoam-1732.ebuild │ ├── files │ │ └── cgnsfoam-compile.patch │ └── metadata.xml ├── cgnslib │ ├── ChangeLog │ ├── Manifest │ ├── cgnslib-2.5.4.ebuild │ ├── files │ │ ├── cgnslib-2.5.4.patch │ │ └── cgnslib-2.5.4_hdf5.patch │ └── metadata.xml ├── cgnstools │ ├── ChangeLog │ ├── Manifest │ ├── cgnstools-2.5.4-r1.ebuild │ ├── files │ │ ├── cgnstools-2.5.4.patch │ │ ├── cgnstools-2.5.4_cgns_to_vtk2D.patch │ │ ├── cgnstools-2.5.4_gcc4.4.patch │ │ └── cgnstools-2.5.4_tcltk.patch │ └── metadata.xml ├── chemkit │ ├── ChangeLog │ ├── Manifest │ ├── chemkit-0.1.ebuild │ └── metadata.xml ├── cnsface-scripts │ ├── ChangeLog │ ├── Manifest │ ├── cnsface-scripts-0.1.ebuild │ └── metadata.xml ├── coinhsl │ ├── ChangeLog │ ├── Manifest │ ├── coinhsl-2012.12.21.ebuild │ ├── coinhsl-2013.06.18.ebuild │ └── metadata.xml ├── coinor-alps │ ├── ChangeLog │ ├── Manifest │ ├── coinor-alps-1.4.4.ebuild │ └── metadata.xml ├── coinor-bcp │ ├── ChangeLog │ ├── Manifest │ ├── coinor-bcp-1.3.5.ebuild │ └── metadata.xml ├── coinor-bcps │ ├── ChangeLog │ ├── Manifest │ ├── coinor-bcps-0.93.5.ebuild │ └── metadata.xml ├── coinor-blis │ ├── ChangeLog │ ├── Manifest │ ├── coinor-blis-0.93.5.ebuild │ └── metadata.xml ├── coinor-bonmin │ ├── ChangeLog │ ├── Manifest │ ├── coinor-bonmin-1.7.0.ebuild │ └── metadata.xml ├── coinor-buildtools │ ├── ChangeLog │ ├── coinor-buildtools-0.7.4.ebuild │ └── metadata.xml ├── coinor-cbc │ ├── ChangeLog │ ├── Manifest │ ├── coinor-cbc-2.8.3.ebuild │ └── metadata.xml ├── coinor-cgl │ ├── ChangeLog │ ├── Manifest │ ├── coinor-cgl-0.58.1.ebuild │ └── metadata.xml ├── coinor-clp │ ├── ChangeLog │ ├── Manifest │ ├── coinor-clp-1.15.2.ebuild │ ├── files │ │ └── coinor-clp-1.15.1-mpi-header.patch │ └── metadata.xml ├── coinor-couenne │ ├── ChangeLog │ ├── Manifest │ ├── coinor-couenne-0.4.3.ebuild │ └── metadata.xml ├── coinor-cppad │ ├── ChangeLog │ ├── Manifest │ ├── coinor-cppad-20130717.ebuild │ └── metadata.xml ├── coinor-csdp │ ├── ChangeLog │ ├── Manifest │ ├── coinor-csdp-6.1.1.ebuild │ └── metadata.xml ├── coinor-dip │ ├── ChangeLog │ ├── Manifest │ ├── coinor-dip-0.83.2.ebuild │ └── metadata.xml ├── coinor-dylp │ ├── ChangeLog │ ├── Manifest │ ├── coinor-dylp-1.9.0.ebuild │ └── metadata.xml ├── coinor-flopcpp │ ├── ChangeLog │ ├── Manifest │ ├── coinor-flopcpp-1.1.3.ebuild │ └── metadata.xml ├── coinor-mp │ ├── ChangeLog │ ├── Manifest │ ├── coinor-mp-1.7.0.ebuild │ └── metadata.xml ├── coinor-netlib │ ├── ChangeLog │ ├── Manifest │ ├── coinor-netlib-1.2.4.ebuild │ └── metadata.xml ├── coinor-os │ ├── ChangeLog │ ├── Manifest │ ├── coinor-os-2.6.0.ebuild │ └── metadata.xml ├── coinor-osi │ ├── ChangeLog │ ├── Manifest │ ├── coinor-osi-0.106.1.ebuild │ └── metadata.xml ├── coinor-sample │ ├── ChangeLog │ ├── Manifest │ ├── coinor-sample-1.2.6.ebuild │ └── metadata.xml ├── coinor-symphony │ ├── ChangeLog │ ├── Manifest │ ├── coinor-symphony-5.5.0.ebuild │ └── metadata.xml ├── coinor-utils │ ├── ChangeLog │ ├── Manifest │ ├── coinor-utils-2.9.3.ebuild │ └── metadata.xml ├── coinor-vol │ ├── ChangeLog │ ├── Manifest │ ├── coinor-vol-1.4.0.ebuild │ └── metadata.xml ├── cs-rosetta-db │ ├── ChangeLog │ ├── Manifest │ ├── cs-rosetta-db-1.01.2009.1109.11.ebuild │ └── metadata.xml ├── dcmtk │ ├── ChangeLog │ ├── Manifest │ ├── dcmtk-3.5.4-r3.ebuild │ ├── dcmtk-3.5.5_pre20101008.ebuild │ ├── files │ │ └── dcmtk-asneeded.patch │ └── metadata.xml ├── dealii │ ├── Manifest │ ├── dealii-8.0.0.ebuild │ ├── dealii-9999.ebuild │ └── metadata.xml ├── driftwood │ ├── ChangeLog │ ├── Manifest │ ├── driftwood-0.87.ebuild │ └── metadata.xml ├── etsf_io │ ├── ChangeLog │ ├── Manifest │ ├── etsf_io-1.0.3-r2.ebuild │ └── metadata.xml ├── factory │ ├── ChangeLog │ ├── Manifest │ ├── factory-3.1.1-r1.ebuild │ ├── factory-3.1.1.ebuild │ ├── files │ │ └── factory-3.1.1-gentoo.diff │ └── metadata.xml ├── fdlibm │ ├── ChangeLog │ ├── Manifest │ ├── fdlibm-5.3.ebuild │ └── metadata.xml ├── fgsl │ ├── ChangeLog │ ├── Manifest │ ├── fgsl-0.9.3.ebuild │ ├── fgsl-0.9.4.ebuild │ ├── files │ │ └── fgsl-0.9.3-sharedlibs.patch │ └── metadata.xml ├── fox │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── 4.1.2-r2-install-customizations.patch │ ├── fox-4.1.2-r2.ebuild │ └── metadata.xml ├── framewave │ ├── Manifest │ ├── framewave-1.3.1.ebuild │ └── metadata.xml ├── geom │ ├── ChangeLog │ ├── Manifest │ ├── geom-5.1.2.7.ebuild │ └── metadata.xml ├── ghmm │ ├── ChangeLog │ ├── ghmm-9999.ebuild │ └── metadata.xml ├── givaro │ ├── ChangeLog │ ├── Manifest │ ├── givaro-3.2.13.ebuild │ ├── givaro-3.3.0.ebuild │ └── metadata.xml ├── gmsh │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── gmsh-2.5.0-libpng-1.5.patch │ │ └── gmsh-2.5.0-link.patch │ ├── gmsh-2.5.0-r1.ebuild │ ├── gmsh-2.5.0.ebuild │ ├── gmsh-9999.ebuild │ └── metadata.xml ├── gotoblas2 │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── gotoblas2-1.13-aliasing.patch │ │ ├── gotoblas2-1.13-dynamic.patch │ │ ├── gotoblas2-1.13-fcheck.patch │ │ └── gotoblas2-1.13-sharedlibs.patch │ ├── gotoblas2-1.13.ebuild │ └── metadata.xml ├── gsl │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── gsl-1.16-cblas-external.patch │ ├── gsl-1.16-r1.ebuild │ └── metadata.xml ├── iml │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── iml-1.0.3-fix-undefined-symbol.patch │ │ ├── iml-1.0.3-repl_removal.patch │ │ └── iml-1.0.3-use-any-cblas-implementation.patch │ ├── iml-1.0.3-r2.ebuild │ └── metadata.xml ├── ipopt │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── ipopt-3.11.2-mpi-header.patch │ ├── ipopt-3.11.2.ebuild │ └── metadata.xml ├── k3match │ ├── ChangeLog │ ├── Manifest │ ├── k3match-1.1.ebuild │ └── metadata.xml ├── lapack-reference │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── 3.3.1-blas-libs.patch │ │ ├── 3.3.1-xblas-libs.patch │ │ └── lapack-3.4.1-cmake.patch │ ├── lapack-reference-3.4.2.ebuild │ ├── lapack-reference-9999.ebuild │ └── metadata.xml ├── lapacke-reference │ ├── ._lapacke │ ├── ChangeLog │ ├── Manifest │ ├── lapacke-reference-3.4.2.ebuild │ ├── lapacke-reference-9999.ebuild │ └── metadata.xml ├── lapackpp │ ├── ChangeLog │ ├── Manifest │ ├── lapackpp-2.5.4.ebuild │ └── metadata.xml ├── lemon │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── lemon-1.2.3-gcc47.patch │ ├── lemon-1.2.3.ebuild │ └── metadata.xml ├── levmar │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── levmar-2.6-shared.patch │ ├── levmar-2.6.ebuild │ └── metadata.xml ├── libcgnsoo │ ├── ChangeLog │ ├── Manifest │ ├── libcgnsoo-1728.ebuild │ └── metadata.xml ├── libfac │ ├── ChangeLog │ ├── Manifest │ ├── libfac-3.1.0.ebuild │ ├── libfac-3.1.1.ebuild │ └── metadata.xml ├── libgeodecomp │ ├── Manifest │ ├── files │ │ └── cmake.patch │ ├── libgeodecomp-0.1.0.ebuild │ ├── libgeodecomp-0.2.0.ebuild │ ├── libgeodecomp-9999.ebuild │ └── metadata.xml ├── libmatheval │ ├── ChangeLog │ ├── Manifest │ ├── libmatheval-1.1.10.ebuild │ └── metadata.xml ├── libspatialindex │ ├── ChangeLog │ ├── Manifest │ ├── libspatialindex-1.6.1.ebuild │ └── metadata.xml ├── libsufr │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── libsufr-0.3.0-multilib.patch │ ├── libsufr-0.3.3.ebuild │ ├── libsufr-0.4.1.ebuild │ ├── libsufr-0.5.2.ebuild │ └── metadata.xml ├── libxc │ ├── ChangeLog │ ├── Manifest │ ├── libxc-1.2.0-r1.ebuild │ ├── libxc-2.0.1.ebuild │ ├── libxc-9999.ebuild │ └── metadata.xml ├── lwpr │ ├── ChangeLog │ ├── Manifest │ ├── lwpr-1.2.5.ebuild │ └── metadata.xml ├── m4ri │ ├── ChangeLog │ ├── Manifest │ ├── m4ri-20090512.ebuild │ ├── m4ri-20100221.ebuild │ └── metadata.xml ├── magma │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── magma-1.2.1-no-cuda-driver.patch │ ├── magma-1.3.0.ebuild │ └── metadata.xml ├── matio │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── matio-1.3.4-autotools.patch │ ├── matio-1.3.4.ebuild │ └── metadata.xml ├── med │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── med-2.3.5-gcc-4.3.patch │ ├── med-2.3.6.ebuild │ └── metadata.xml ├── mesquite │ ├── ChangeLog │ ├── Manifest │ ├── mesquite-2.1.2.ebuild │ └── metadata.xml ├── mkl │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ ├── mkl-11.0.3.163.ebuild │ └── mkl-11.0.5.192.ebuild ├── mlpack │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── mlpack-1.0.4-libdir.patch │ ├── metadata.xml │ └── mlpack-1.0.6.ebuild ├── modglue │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── modglue-1.16-ldflags.patch │ │ ├── modglue-1.16-lib64.patch │ │ └── modglue-1.16-parallelmake.patch │ ├── metadata.xml │ └── modglue-1.16.ebuild ├── mpiblacs │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── mpiblacs-1.1-r1.ebuild ├── msms │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── build-with-linux-3.0.patch │ ├── metadata.xml │ └── msms-1.5.6.ebuild ├── mumps │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── mumps-4.10.0-r2.ebuild ├── ni-visa │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── 70nivisa │ ├── metadata.xml │ └── ni-visa-0.0.1.ebuild ├── o2scl │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── o2scl-0.913.ebuild ├── oasa │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── oasa-0.13.1.ebuild ├── omalloc │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── omalloc-0.9.6-gentoo.diff │ │ └── parallel-build.patch │ ├── metadata.xml │ └── omalloc-0.9.6.ebuild ├── openblas │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ ├── openblas-0.2.8.ebuild │ └── openblas-9999.ebuild ├── openlibm │ ├── ChangeLog │ ├── files │ │ ├── openlibm-extras-soname.patch │ │ ├── openlibm-respect-toolchain.patch │ │ └── openlibm-soname.patch │ ├── metadata.xml │ └── openlibm-9999.ebuild ├── optpp │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── optpp-2.4.ebuild ├── p4est │ ├── Manifest │ ├── files │ │ └── p4est-libtool-fix.patch │ ├── metadata.xml │ └── p4est-0.3.4.1.ebuild ├── pagmo │ ├── ChangeLog │ ├── metadata.xml │ └── pagmo-9999.ebuild ├── parmetis │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── parmetis-4.0.3.ebuild ├── pg2plplot │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── pg2plplot-0.2.0.ebuild ├── plasma │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ ├── plasma-2.4.6.ebuild │ └── plasma-2.5.1.ebuild ├── scalapack │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── scalapack-2.0.2.ebuild ├── scikits_image │ ├── ChangeLog │ └── scikits_image-9999.ebuild ├── starparse │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ ├── starparse-1.0.ebuild │ ├── starparse-9999.ebuild │ └── starparse-9999_pre10.ebuild ├── superlu_dist │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── superlu_dist-3.3-duplicate-symbols.patch │ ├── metadata.xml │ └── superlu_dist-3.3.ebuild ├── superlu_mt │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── superlu_mt-2.1-duplicate-symbols.patch │ │ └── superlu_mt-2.1-missing-includes.patch │ ├── metadata.xml │ └── superlu_mt-2.1.ebuild ├── symmetrica │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── makefile │ ├── metadata.xml │ └── symmetrica-2.0.ebuild ├── tmglib │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── tmglib-3.4.2.ebuild ├── trilinos │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── trilinos-11.0.3-fix-install-paths.patch │ ├── metadata.xml │ ├── trilinos-11.0.3.ebuild │ └── trilinos-11.2.3.ebuild ├── votca-tools │ ├── ChangeLog │ ├── metadata.xml │ └── votca-tools-9999.ebuild ├── wannier90 │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── wannier90-1.1-0001.patch │ │ └── wannier90-1.1-0002.patch │ ├── metadata.xml │ └── wannier90-1.2-r1.ebuild ├── xblas │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── xblas-1.0.248.ebuild └── zarja │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── zarja-1.1.1.ebuild ├── sci-mathematics ├── Macaulay2 │ ├── ChangeLog │ ├── Macaulay2-9999.ebuild │ ├── Manifest │ ├── files │ │ ├── 70Macaulay2-gentoo.el │ │ ├── 9999-lapack.patch │ │ ├── 9999-paths-of-external-programs.patch │ │ └── paths-of-dependencies.patch │ └── metadata.xml ├── Oid │ ├── ChangeLog │ ├── Manifest │ ├── Oid-4.0.ebuild │ └── metadata.xml ├── acl2 │ ├── ChangeLog │ ├── Manifest │ ├── acl2-4.2.ebuild │ ├── acl2-4.3.ebuild │ ├── files │ │ └── set-booksdir.patch │ └── metadata.xml ├── alt-ergo │ ├── ChangeLog │ ├── Manifest │ ├── alt-ergo-0.95.1.ebuild │ └── metadata.xml ├── apron │ ├── ChangeLog │ ├── Manifest │ ├── apron-0.9.10.ebuild │ └── metadata.xml ├── aribas │ ├── ChangeLog │ ├── Manifest │ ├── aribas-1.63.ebuild │ ├── files │ │ └── 64aribas-gentoo.el │ └── metadata.xml ├── axiom │ ├── ChangeLog │ ├── Manifest │ ├── axiom-201009.ebuild │ ├── files │ │ ├── noweb-2.9-insecure-tmp-file.Makefile.patch │ │ └── noweb-2.9-insecure-tmp-file.patch.input │ └── metadata.xml ├── burrtools │ ├── ChangeLog │ ├── Manifest │ ├── burrtools-0.5.2-r1.ebuild │ └── metadata.xml ├── cadabra │ ├── ChangeLog │ ├── Manifest │ ├── cadabra-1.31.ebuild │ ├── files │ │ ├── cadabra-1.21-no-stripping.patch │ │ └── cadabra-1.25-xcadabra-flags.patch │ └── metadata.xml ├── cdfplayer │ ├── ChangeLog │ ├── Manifest │ ├── cdfplayer-9.0.1.ebuild │ ├── files │ │ └── cdfplayer-9.0.1-installer.patch │ └── metadata.xml ├── cipi │ ├── ChangeLog │ ├── cipi-1.0.ebuild │ └── metadata.xml ├── dolfin │ ├── ChangeLog │ ├── Manifest │ ├── dolfin-0.9.9.ebuild │ ├── files │ │ └── dolfin-0.9.9-find-armadillo.patch │ └── metadata.xml ├── dsfmt │ ├── ChangeLog │ ├── Manifest │ ├── dsfmt-2.2.ebuild │ └── metadata.xml ├── flocq │ ├── ChangeLog │ ├── Manifest │ ├── flocq-2.1.0.ebuild │ └── metadata.xml ├── frama-c │ ├── ChangeLog │ ├── Manifest │ ├── frama-c-20120901.ebuild │ └── metadata.xml ├── freefem++ │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── freefem++-acoptim.patch │ │ ├── freefem++-no-doc-autobuild.patch │ │ └── freefem++-path.patch │ ├── freefem++-3.8.ebuild │ └── metadata.xml ├── gambit │ ├── ChangeLog │ ├── Manifest │ ├── gambit-0.2010.09.01.ebuild │ └── metadata.xml ├── gap-guava │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── gap-guava-3.10-fix-missing-header.patch │ ├── gap-guava-3.10-r1.ebuild │ └── metadata.xml ├── gap │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── 64gap-gentoo.el │ ├── gap-4.4.12.ebuild │ └── metadata.xml ├── gappa │ ├── ChangeLog │ ├── Manifest │ ├── gappa-1.0.0.ebuild │ └── metadata.xml ├── gappalib-coq │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── gappalib-coq-coq84.patch │ ├── gappalib-coq-0.18.0.ebuild │ └── metadata.xml ├── giac │ ├── ChangeLog │ ├── Manifest │ ├── giac-1.0.0.ebuild │ └── metadata.xml ├── htk │ ├── Manifest │ ├── files │ │ └── include_make_destdir.patch │ ├── htk-3.4.1.ebuild │ └── metadata.xml ├── kash-bin │ ├── ChangeLog │ ├── Manifest │ ├── kash-bin-3.ebuild │ └── metadata.xml ├── kayali │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── kayali-0.2-calcwindow.patch │ ├── kayali-0.3.2.ebuild │ └── metadata.xml ├── lattE-macchiato │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── buildpackages.patch │ ├── lattE-macchiato-0.9.3.ebuild │ └── metadata.xml ├── libsfmt │ ├── ChangeLog │ ├── Manifest │ ├── libsfmt-1.3.0.ebuild │ └── metadata.xml ├── lie │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── lie-2.2.2-make.patch │ │ └── parrallelmake-lie-2.2.2.patch │ ├── lie-2.2.2.ebuild │ └── metadata.xml ├── ltl2ba │ ├── ChangeLog │ ├── Manifest │ ├── ltl2ba-1.1.ebuild │ └── metadata.xml ├── mdp │ ├── ChangeLog │ ├── Manifest │ ├── mdp-3.2.ebuild │ ├── mdp-9999.ebuild │ └── metadata.xml ├── netgen │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── netgen.desktop │ │ └── netgen.png │ ├── metadata.xml │ └── netgen-4.9.13.ebuild ├── open-axiom │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── open-axiom-1.3.0.ebuild ├── pest │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── pest-12.2.ebuild ├── petsc │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── petsc-3.3-configure-pic.patch │ │ ├── petsc-3.3-disable-rpath.patch │ │ └── petsc-3.3-fix-complex-threads.patch │ ├── metadata.xml │ └── petsc-3.3_p5.ebuild ├── pff │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── pff-8.4.ebuild ├── polymake │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── 2.10-soname.patch │ │ └── polymake-2.11-drop-jreality.patch │ ├── metadata.xml │ └── polymake-2.11-r1.ebuild ├── pulp │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── pulp-1.5.3.ebuild ├── scilab │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── scilab-5.3.3-as-needed.patch │ │ ├── scilab-5.3.3-blas-libs.patch │ │ ├── scilab-5.3.3-disable-build-help.patch │ │ ├── scilab-5.3.3-fix-random-runtime-failures.patch │ │ ├── scilab-5.3.3-fortran-link.patch │ │ ├── scilab-5.3.3-gui-no-xcos.patch │ │ ├── scilab-5.3.3-hdf18.patch │ │ ├── scilab-5.3.3-java-heap.patch │ │ ├── scilab-5.3.3-javadoc-utf8.patch │ │ ├── scilab-5.3.3-jgrapx-min.patch │ │ ├── scilab-5.3.3-jvm-detection.patch │ │ ├── scilab-5.3.3-matio15.patch │ │ ├── scilab-5.3.3-no-lhpi.patch │ │ ├── scilab-5.3.3-no-xcos-deps.patch │ │ ├── scilab-5.4.1-fix-random-runtime-failure.patch │ │ ├── scilab-5.4.1-followlinks.patch │ │ ├── scilab-5.4.1-gluegen.patch │ │ ├── scilab-5.4.1-java-heap.patch │ │ ├── scilab.bash_completion │ │ └── scilab.xml │ ├── metadata.xml │ ├── scilab-5.3.3-r1.ebuild │ └── scilab-5.4.1.ebuild ├── surfer │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── surfer-0.0.197.ebuild ├── ufc │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── ufc-1.4.2.ebuild ├── why │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── why-2.30.patch │ ├── metadata.xml │ └── why-2.30.ebuild └── yorick │ ├── ChangeLog │ ├── Manifest │ ├── files │ └── yorick-2.1.06.patch │ ├── metadata.xml │ └── yorick-2.1.06.ebuild ├── sci-misc ├── finomaton │ ├── ChangeLog │ ├── Manifest │ ├── finomaton-1.0.ebuild │ └── metadata.xml ├── fitscut │ ├── ChangeLog │ ├── Manifest │ ├── fitscut-1.4.4.ebuild │ └── metadata.xml ├── foma │ ├── ChangeLog │ ├── Manifest │ ├── foma-0.9.14_alpha.ebuild │ ├── foma-0.9.16_alpha.ebuild │ └── metadata.xml ├── hfst │ ├── ChangeLog │ ├── Manifest │ ├── hfst-2.2.ebuild │ ├── hfst-3.0.2.ebuild │ ├── hfst-3.3.12.ebuild │ └── metadata.xml ├── jwnl │ ├── ChangeLog │ ├── Manifest │ ├── jwnl-1.3_rc3.ebuild │ └── metadata.xml ├── kotus-sanalista │ ├── ChangeLog │ ├── Manifest │ ├── kotus-sanalista-1-r1.ebuild │ └── metadata.xml ├── nltk │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── nltk-2.0.1_rc1.ebuild ├── omorfi │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── omorfi-0.1_alpha.ebuild ├── openfst │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── openfst-20080422_beta-gcc-4.3.patch │ ├── metadata.xml │ ├── openfst-1.2.7.ebuild │ └── openfst-1.3.2.ebuild ├── opennlp-maxent │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── opennlp-maxent-2.4.0.ebuild ├── opennlp-tools │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── opennlp-tools-1.3.0.ebuild ├── praat │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ ├── praat-5.1.00.ebuild │ └── praat-5.1.15.ebuild ├── pywordnet │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── pywordnet-2.0.1.ebuild ├── salome-component │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── salome-component-5.1.3-mpi.patch │ ├── metadata.xml │ ├── salome-component-5.1.3.ebuild │ └── salome-component-5.1.4.ebuild ├── salome-geom │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── salome-geom-5.1.3-qt4-path.patch │ ├── metadata.xml │ ├── salome-geom-5.1.3.ebuild │ └── salome-geom-5.1.4.ebuild ├── salome-gui │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── salome-gui-5.1.3-qt4-path.patch │ │ └── salome-gui-5.1.4-qt4-path.patch │ ├── metadata.xml │ ├── salome-gui-5.1.3.ebuild │ └── salome-gui-5.1.4.ebuild ├── salome-kernel │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── salome-kernel-5.1.3-lib_location.patch │ │ ├── salome-kernel-5.1.3-openmpi.patch │ │ ├── salome-kernel-5.1.3-python-2.6.patch │ │ ├── salome-kernel-5.1.4-lib_location.patch │ │ ├── salome-kernel-5.1.4-openmpi.patch │ │ ├── salome-kernel-5.1.4-python-2.6.patch │ │ └── salome-kernel.png │ ├── metadata.xml │ ├── salome-kernel-5.1.3.ebuild │ └── salome-kernel-5.1.4.ebuild ├── salome-med │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── salome-med-5.1.3-check_metis.patch │ │ ├── salome-med-5.1.3-check_scotch.patch │ │ ├── salome-med-5.1.3-gcc.patch │ │ ├── salome-med-5.1.3-med_int.patch │ │ ├── salome-med-5.1.3-mpi.patch │ │ ├── salome-med-5.1.3-qt4-path.patch │ │ ├── salome-med-5.1.3-scotch.patch │ │ ├── salome-med-5.1.4-check_metis.patch │ │ ├── salome-med-5.1.4-check_scotch.patch │ │ ├── salome-med-5.1.4-gcc.patch │ │ ├── salome-med-5.1.4-med_int.patch │ │ └── salome-med-5.1.4-scotch.patch │ ├── metadata.xml │ ├── salome-med-5.1.3.ebuild │ └── salome-med-5.1.4.ebuild ├── salome-meta │ ├── ChangeLog │ ├── metadata.xml │ ├── salome-meta-5.1.3.ebuild │ └── salome-meta-5.1.4.ebuild ├── salome-pycalculator │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ ├── salome-pycalculator-5.1.3.ebuild │ └── salome-pycalculator-5.1.4.ebuild ├── salome-smesh │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ ├── salome-smesh-5.1.3.ebuild │ └── salome-smesh-5.1.4.ebuild ├── salome-visu │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ ├── salome-visu-5.1.3.ebuild │ └── salome-visu-5.1.4.ebuild ├── salome-yacs │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── salome-yacs-5.1.3-ac_python_devel.patch │ │ ├── salome-yacs-5.1.3-lib_location.patch │ │ ├── salome-yacs-5.1.3-libdir.patch │ │ └── salome-yacs-5.1.4-ac_python_devel.patch │ ├── metadata.xml │ ├── salome-yacs-5.1.3.ebuild │ └── salome-yacs-5.1.4.ebuild ├── sfst │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── 50sfst-gentoo.el │ │ ├── SFST-1.3-gcc43.patch │ │ └── ftdetect-sfst.vim │ ├── metadata.xml │ ├── sfst-1.4.2.ebuild │ └── sfst-1.4.6g.ebuild ├── stanford-parser │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── stanford-parser-1.6.ebuild └── stanford-tagger │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── stanford-tagger-20060521.ebuild ├── sci-physics ├── LoopTools │ ├── ChangeLog │ ├── LoopTools-2.8.ebuild │ ├── Manifest │ ├── files │ │ └── LoopTools-2.8-makefile.patch │ └── metadata.xml ├── abinit │ ├── ChangeLog │ ├── Manifest │ ├── abinit-7.2.2.ebuild │ ├── files │ │ ├── 6.12.1-autoconf.patch │ │ ├── 6.12.1-xmalloc.patch │ │ ├── 6.12.3-gui-makefiles.tbz │ │ ├── 6.2.2-change-default-directories.patch │ │ └── 7.0.4-test_dirs.patch │ └── metadata.xml ├── atompaw │ ├── ChangeLog │ ├── Manifest │ ├── atompaw-3.0.1.9-r1.ebuild │ ├── files │ │ └── 3.0.1-longplot.patch │ └── metadata.xml ├── atompaw2abinit │ ├── ChangeLog │ ├── Manifest │ ├── atompaw2abinit-3.3.0-r1.ebuild │ └── metadata.xml ├── bigdft │ ├── ChangeLog │ ├── Manifest │ ├── bigdft-1.7_pre24.ebuild │ └── files │ │ └── bigdft-1.7-dev.24-nolib_mods.patch ├── elk │ ├── ChangeLog │ ├── Manifest │ ├── elk-1.4.22.ebuild │ ├── elk-2.1.25.ebuild │ └── metadata.xml ├── espresso++ │ ├── ChangeLog │ ├── espresso++-9999.ebuild │ └── metadata.xml ├── espresso │ ├── ChangeLog │ ├── espresso-9999.ebuild │ └── metadata.xml ├── geant-vmc │ ├── ChangeLog │ ├── Manifest │ ├── geant-vmc-3.1.15a.ebuild │ ├── geant-vmc-4.2.14a.ebuild │ └── metadata.xml ├── geant │ ├── ChangeLog │ ├── Manifest │ ├── geant-3.21.14-r4.ebuild │ └── metadata.xml ├── herwig++ │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── herwig++-2.6.3-looptools.patch │ ├── herwig++-2.6.3.ebuild │ └── metadata.xml ├── lammps │ ├── ChangeLog │ ├── Manifest │ ├── lammps-20130701.ebuild │ ├── lammps-20130708.ebuild │ ├── lammps-20130711.ebuild │ ├── lammps-20130816.ebuild │ └── metadata.xml ├── openmx │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── 3.7-fortran_objects.patch │ ├── metadata.xml │ ├── openmx-3.6.ebuild │ └── openmx-3.7.4.ebuild ├── qcl │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── qcl-0.6.3-gcc43.patch │ │ └── qcl-0.6.3-makefile.patch │ ├── metadata.xml │ └── qcl-0.6.3-r1.ebuild ├── root │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── proofd.confd │ │ ├── proofd.initd │ │ ├── root-5.28.00b-glibc212.patch │ │ ├── root-5.28.00b-unuran.patch │ │ ├── root-5.32.00-afs.patch │ │ ├── root-5.32.00-cfitsio.patch │ │ ├── root-5.32.00-chklib64.patch │ │ ├── root-5.32.00-dotfont.patch │ │ ├── root-5.32.00-htmldoc.patch │ │ ├── root-5.32.00-nobyte-compile.patch │ │ ├── root-5.32.00-prop-flags.patch │ │ ├── root-5.34.05-nobyte-compile.patch │ │ ├── root-9999-cling.patch │ │ ├── root-9999-dotfont.patch │ │ ├── rootd.confd │ │ └── rootd.initd │ ├── metadata.xml │ ├── root-5.34.09.ebuild │ └── root-9999.ebuild ├── thepeg │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── thepeg-1.8.3-java.patch │ ├── metadata.xml │ └── thepeg-1.8.3.ebuild └── vgm │ ├── ChangeLog │ ├── metadata.xml │ └── vgm-3.06.ebuild ├── sci-visualization ├── ferret-bin │ ├── ChangeLog │ ├── Manifest │ ├── ferret-bin-6.6.4.ebuild │ ├── files │ │ └── 99ferret │ └── metadata.xml ├── gnuplot │ ├── ChangeLog │ ├── gnuplot-4.6.9999.ebuild │ ├── gnuplot-4.7.9999.ebuild │ └── metadata.xml ├── labplot │ ├── files │ │ └── labplot-9999-liborigin2.patch │ ├── labplot-9999.ebuild │ └── metadata.xml ├── nodemon │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── nodemon-0.3.5.ebuild ├── v_sim │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── v_sim-3.6.0.ebuild ├── vtkPOFFReader │ ├── ChangeLog │ ├── metadata.xml │ └── vtkPOFFReader-300.ebuild └── yt │ ├── metadata.xml │ └── yt-9999.ebuild ├── scripts ├── generate_boinc-src_tarball.sh ├── make_path64_snapshot.sh └── portdupe ├── skel.ChangeLog ├── skel.ebuild ├── skel.metadata.xml ├── sys-apps └── likwid │ ├── Manifest │ ├── files │ ├── likwid.patch │ ├── use_access_daemon.patch │ └── use_uncore.patch │ ├── likwid-3.0.ebuild │ └── metadata.xml ├── sys-cluster ├── blcr │ ├── ChangeLog │ ├── Manifest │ ├── blcr-0.8.2.ebuild │ ├── blcr-0.8.4.ebuild │ └── metadata.xml ├── charm │ ├── ChangeLog │ ├── Manifest │ ├── charm-6.5.1.ebuild │ ├── files │ │ ├── charm-6.5.0-charmc-gentoo.patch │ │ └── charm-6.5.1-cleanup-config.patch │ └── metadata.xml ├── charmdebug │ ├── ChangeLog │ ├── Manifest │ ├── charmdebug-6.2.0-r1.ebuild │ └── metadata.xml ├── empi │ ├── ChangeLog │ ├── empi-0.10.ebuild │ ├── files │ │ ├── ChangeLog-0.10 │ │ ├── README.txt │ │ ├── empi-0.10 │ │ ├── eselect.mpi-0.10 │ │ ├── mpi.csh │ │ └── mpi.sh │ └── metadata.xml ├── ganglia_jobmonarch │ ├── Manifest │ ├── files │ │ ├── job_monarch_link.sh │ │ ├── jobarchived.initd │ │ └── jobmond.initd │ ├── ganglia_jobmonarch-0.3.1.ebuild │ └── metadata.xml ├── hpl │ ├── ChangeLog │ ├── Manifest │ ├── hpl-2.0-r1.ebuild │ ├── hpl-2.1.ebuild │ └── metadata.xml ├── hpx │ ├── Manifest │ ├── files │ │ └── hpx-0.9.5-install-path.patch │ ├── hpx-0.9.5.ebuild │ ├── hpx-0.9.6.ebuild │ └── metadata.xml ├── htcondor │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── 0001-Apply-the-user-s-condor_config-last-rather-than-firs.patch │ │ ├── condor.confd │ │ ├── condor.initd │ │ ├── condor_config.generic.patch │ │ ├── condor_config.local │ │ ├── condor_shadow_dlopen-8.0.0.patch │ │ ├── fix_sandbox_violations-8.0.0.patch │ │ └── packaging_directories-8.0.0.patch │ ├── htcondor-8.0.0.ebuild │ └── metadata.xml ├── lustre │ ├── ChangeLog │ ├── files │ │ ├── 0001-LU-2982-build-make-AC-check-for-linux-arch-sandbox-f.patch │ │ ├── 0002-LU-2686-kernel-Kernel-update-for-3.7.2-201.fc18.patch │ │ ├── 0003-LU-3079-kernel-3.9-hlist_for_each_entry-uses-3-args.patch │ │ └── 0004-LU-3079-kernel-f_vfsmnt-replaced-by-f_path.mnt.patch │ ├── lustre-9999.ebuild │ └── metadata.xml ├── modules │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── createmodule.py │ │ ├── createmodule.sh │ │ ├── modules-3.2.10-avail.patch │ │ ├── modules-3.2.10-bindir.patch │ │ ├── modules-3.2.10-clear.patch │ │ ├── modules-3.2.10-errorline.patch │ │ ├── modules-3.2.10-versioning.patch │ │ ├── modules-3.2.9c-errorline.patch │ │ └── modules.sh.in │ ├── metadata.xml │ ├── modules-3.2.10-r1.ebuild │ ├── modules-3.2.10.ebuild │ ├── modules-3.2.9c-r1.ebuild │ └── modules-3.2.9c.ebuild ├── mpich │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── eselect.mpi.mpich │ ├── metadata.xml │ └── mpich-3.0.4.ebuild ├── mpich2 │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── 0001-MPD_CONF_FILE-should-be-readable.patch │ │ ├── 0002-mpd_conf_file-search-order.patch │ │ ├── 0003-Fix-pkgconfig-for-mpich2-ch3-v1.2.1.patch │ │ ├── 0003-Fix-pkgconfig-for-mpich2-ch3.patch │ │ ├── eselect.mpi.mpich2 │ │ ├── fix-pkg-config-files.patch │ │ ├── mpd.conf │ │ ├── mpich2-1.0.8-gforker-install-alt-fix.patch │ │ ├── mpich2-1.0.8-mpdconf-env.patch │ │ ├── mpich2-1.0.8-pkgconfig.patch │ │ ├── mpich2-1.2.1-fix-missing-libs.patch │ │ ├── mpich2-1.3-libtvmpich2.so-respect-user-LDFLAGS.patch │ │ └── mpich2-hvector.patch │ ├── metadata.xml │ ├── mpich2-1.2.1_p1-r2.ebuild │ ├── mpich2-1.4.1_p1.ebuild │ └── mpich2-1.5.ebuild ├── mvapich2 │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── eselect.mpi.mvapich2 │ ├── metadata.xml │ └── mvapich2-1.6-r1.ebuild ├── nullmpi │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── nullmpi-0.7-libtool.patch │ ├── metadata.xml │ ├── nullmpi-0.7.ebuild │ └── nullmpi-9999.ebuild ├── openmpi │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ ├── eselect.mpi.openmpi │ │ ├── hooks-disable-malloc-override-inside-of-Gentoo-sandb.patch │ │ └── openmpi-r24328.patch │ ├── metadata.xml │ └── openmpi-1.6.5.ebuild ├── ovis │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── ovis-directories.patch │ ├── metadata.xml │ └── ovis-3.0.1.ebuild ├── projections │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── projections-6.2.1.ebuild └── pyslice │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── pyslice-1.6.4-r1.ebuild ├── sys-devel └── gdebugger │ ├── ChangeLog │ ├── Manifest │ ├── gdebugger-6.2.438.ebuild │ └── metadata.xml ├── sys-infiniband └── librxe │ ├── ChangeLog │ ├── Manifest │ ├── librxe-1.0.0.ebuild │ └── metadata.xml ├── virtual ├── blacs │ ├── ChangeLog │ ├── blacs-1.1.ebuild │ └── metadata.xml ├── blas │ ├── ChangeLog │ ├── blas-2.1.ebuild │ └── metadata.xml ├── cblas │ ├── ChangeLog │ ├── cblas-2.0.ebuild │ └── metadata.xml ├── geant │ ├── ChangeLog │ ├── geant-3.ebuild │ └── metadata.xml ├── lapack │ ├── ChangeLog │ ├── lapack-3.4.ebuild │ └── metadata.xml ├── lapacke │ ├── ChangeLog │ ├── lapacke-1.0.ebuild │ └── metadata.xml ├── mpi │ ├── ChangeLog │ ├── metadata.xml │ └── mpi-2.0-r3.ebuild └── scalapack │ ├── ChangeLog │ ├── metadata.xml │ └── scalapack-2.0.ebuild ├── www-apps └── py-swish-e │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── py-swish-e-0.5.ebuild ├── x11-libs ├── agg │ ├── ChangeLog │ ├── Manifest │ ├── agg-2.5-r3.ebuild │ ├── files │ │ └── 2.5 │ │ │ ├── 0001-Fix-non-terminating-loop-conditions-when-len-1.patch │ │ │ ├── 0002-Cure-recursion-by-aborting-if-the-co-ordinates-are-t.patch │ │ │ ├── 0003-Get-coordinates-from-previous-vertex-if-last-command.patch │ │ │ ├── 0004-Make-rasterizer_outline_aa-ignore-close_polygon-when.patch │ │ │ ├── 0005-Remove-VC-6-workaround.patch │ │ │ ├── 0006-Implement-grain-merge-blending-mode-GIMP.patch │ │ │ ├── 0007-Implement-grain-extract-blending-mode-GIMP.patch │ │ │ ├── 0008-Declare-multiplication-and-division-operators-as-con.patch │ │ │ ├── 0009-Add-a-static-identity-transformation.patch │ │ │ ├── 0010-Add-renderer_scanline_aa_alpha.patch │ │ │ ├── 0011-Avoid-division-by-zero-in-color-burn-mode.patch │ │ │ ├── 0012-Avoid-pixel-artifacts-when-compositing.patch │ │ │ ├── 0013-Modify-agg-conv-classes-to-allow-access-to-the-origi.patch │ │ │ ├── 0014-Avoid-potential-zero-division-resulting-in-nan-in-ag.patch │ │ │ ├── 0015-Ensure-first-value-in-the-gamma-table-is-always-zero.patch │ │ │ ├── agg-2.4-depends.patch │ │ │ ├── agg-2.5-autotools.patch │ │ │ ├── agg-2.5-pkgconfig.patch │ │ │ ├── agg-2.5-sdl-automagic.patch │ │ │ └── agg-2.5-sdl-m4.patch │ └── metadata.xml ├── tr │ ├── ChangeLog │ ├── Manifest │ ├── files │ │ └── 1.3-Makefile.patch │ ├── metadata.xml │ └── tr-1.3.ebuild ├── xview-bin │ ├── ChangeLog │ ├── Manifest │ ├── metadata.xml │ └── xview-bin-3.2_p1428.ebuild └── xview │ ├── ChangeLog │ ├── Manifest │ ├── files │ ├── CAN-2005-0076.patch │ ├── lseek.diff │ ├── lseek2.diff │ └── xview-3.2-impl-dec.patch │ ├── metadata.xml │ ├── xview-3.2-r6.ebuild │ ├── xview-3.2-r7.ebuild │ └── xview-3.2-r8.ebuild └── x11-misc └── envytools ├── ChangeLog ├── envytools-9999.ebuild ├── files └── envytools-bison.patch └── metadata.xml /.gitignore: -------------------------------------------------------------------------------- 1 | .DS_Store 2 | app-misc/dummy 3 | -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- 1 | Gentoo Science Overlay 2 | ====================== 3 | 4 | An overlay for Gentoo, geared towards scientific packages. 5 | 6 | Please fork! We will merge! 7 | 8 | Ask for help in #gentoo-science in irc freenode. 9 | 10 | Report issues on the github site: 11 | 12 | https://github.com/gentoo-science/sci/issues 13 | -------------------------------------------------------------------------------- /app-admin/eselect/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | bicatali@gentoo.org 6 | 7 | 8 | -------------------------------------------------------------------------------- /app-doc/blacs-docs/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for app-doc/blacs-docs 2 | # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | *blacs-docs-1.1 (13 Dec 2010) 6 | 7 | 13 Dec 2010; Sébastien Fabbro +blacs-docs-1.1.ebuild, 8 | +metadata.xml: 9 | Initial import 10 | 11 | -------------------------------------------------------------------------------- /app-doc/blacs-docs/Manifest: -------------------------------------------------------------------------------- 1 | DIST blacs-docs-1.1.tar.bz2 150345 SHA256 6739d4b789d341ef1116a53e4f2750e8a8b3077dfd79b9d8e7b3c92d66001381 2 | -------------------------------------------------------------------------------- /app-doc/blas-docs/Manifest: -------------------------------------------------------------------------------- 1 | DIST blas-report.pdf 2412966 SHA256 7874962ae4dc753fcdd483ff0c69931227846632251f79a68f4f879348f321a6 2 | DIST blasqr.pdf 97443 SHA256 5ec151929a3cc2cf4589d414f82b7138169bbe2c72fa9b898dfd911f2c555bfd 3 | DIST lapack-man-3.3.tar.gz 1066170 SHA256 63055ba24cfc0fdef8bce53978c73f216fb505aa2144391382f85d3245fd085a 4 | -------------------------------------------------------------------------------- /app-forensics/vine/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | ottxor@gentoo.org 6 | Christoph Junghans 7 | 8 | 9 | -------------------------------------------------------------------------------- /app-text/dgs/Manifest: -------------------------------------------------------------------------------- 1 | DIST dgs-0.5.10.tar.gz 3572504 SHA256 b01f21609241414fe92d8838e63150bfd7359d74ce05dfa38d2798e9d0f8a0ff 2 | -------------------------------------------------------------------------------- /app-text/dgs/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /app-text/jabref/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | nicolasbock@gmail.com 7 | 8 | 9 | -------------------------------------------------------------------------------- /app-vim/freefem++-syntax/Manifest: -------------------------------------------------------------------------------- 1 | DIST freefem++-syntax-20081108.tar.gz 1108 SHA256 1bad9e9150ca754695669dbc892c14a678062353a59ce648cc9a35650f014eff 2 | -------------------------------------------------------------------------------- /app-vim/vim-gromacs/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | VIM syntax plugin which provides syntax highlighting for the gromacs files. 7 | 8 | 9 | -------------------------------------------------------------------------------- /dev-cpp/eigen/eigen-3.1.4.ebuild: -------------------------------------------------------------------------------- 1 | eigen-9999.ebuild -------------------------------------------------------------------------------- /dev-cpp/eigen/eigen-3.2.0.ebuild: -------------------------------------------------------------------------------- 1 | eigen-9999.ebuild -------------------------------------------------------------------------------- /dev-cpp/growler-arch/Manifest: -------------------------------------------------------------------------------- 1 | DIST growler-arch-0.3.7.1.tar.gz 500709 SHA256 36b53a1ac6eb4602c4a20b430c9f81db3e6ed442d7df1ea35f636367eb29f634 2 | DIST growler-arch-0.3.7.tar.gz 504380 SHA256 2b6804b32b32c7cd73b68fcd399139faf58522e68ed11cf91340f4a4152537e4 3 | -------------------------------------------------------------------------------- /dev-cpp/growler-core/Manifest: -------------------------------------------------------------------------------- 1 | DIST growler-core-0.3.7.tar.gz 271855 SHA256 f71b42d657276590538f9f737bb97b4a0a625987e37d3d2584d4d137fefbcae9 2 | -------------------------------------------------------------------------------- /dev-cpp/growler-math/Manifest: -------------------------------------------------------------------------------- 1 | DIST growler-math-0.3.4.1.tar.gz 178883 SHA256 ba578c958fab839a668ac8c00c27b5724ef5e0fd4e0e65bb45ef74d7603c4163 2 | -------------------------------------------------------------------------------- /dev-cpp/growler-thread/Manifest: -------------------------------------------------------------------------------- 1 | DIST growler-thread-0.3.4.tar.gz 183150 SHA256 9749203246608dca2172d80a11a54ff80846f909b54e9f0fdea960413fdd11ca 2 | -------------------------------------------------------------------------------- /dev-java/flexdock/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | Java docking framework for use in cross-platform Swing applications. 7 | 8 | 9 | -------------------------------------------------------------------------------- /dev-java/jcip-annotations/Manifest: -------------------------------------------------------------------------------- 1 | DIST jcip-annotations-src.jar 4998 SHA256 221f5cbe0b00a4c5f3c8870639de3573223fb9aa2636c631f901302fd4339efc 2 | -------------------------------------------------------------------------------- /dev-java/jhealpix/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for dev-java/jhealpix 2 | # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | *jhealpix-3.11 (16 Jun 2013) 6 | 7 | 16 Jun 2013; Sébastien Fabbro +jhealpix-3.11.ebuild, 8 | +metadata.xml: 9 | dev-java/jhealpix: Initial import 10 | -------------------------------------------------------------------------------- /dev-java/jlatexmath-fop/files/version.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | -------------------------------------------------------------------------------- /dev-java/joda-convert/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /dev-java/joda-time/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for dev-java/joda-time 2 | # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | *joda-time-2.1 (14 May 2012) 6 | 7 | 14 May 2012; Sébastien Fabbro +joda-time-2.1.ebuild, 8 | +metadata.xml: 9 | dev-java/joda-time: import from wtk overlay 10 | 11 | -------------------------------------------------------------------------------- /dev-java/joda-time/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /dev-java/jrosetta/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /dev-java/scirenderer/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | A rendering library for scilab based on JoGL 7 | 8 | 9 | -------------------------------------------------------------------------------- /dev-java/vecmath/Manifest: -------------------------------------------------------------------------------- 1 | DIST vecmath-1.5.1.tar.bz2 84987 SHA256 a279917d9431f920b0061906adca97ff0d0fbbe73699e5abb437fad3402d159d 2 | DIST vecmath-test-1.5.1.tar.bz2 8460 SHA256 f34c862d7f4e5164a43c5287afb5afa21aa40cc701ef6b302ead47c082ec29f4 3 | -------------------------------------------------------------------------------- /dev-java/vecmath/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | 3D vector math package, javax.vecmath 7 | 8 | 9 | -------------------------------------------------------------------------------- /dev-lang/berkeley_upc_translator/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | piatlicki@gmail.com 7 | 8 | 9 | -------------------------------------------------------------------------------- /dev-lang/ispc/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | ottxor@gentoo.org 6 | Christoph Junghans 7 | 8 | 9 | -------------------------------------------------------------------------------- /dev-lang/julia/files/63julia-gentoo.el: -------------------------------------------------------------------------------- 1 | (add-to-list 'load-path "@SITELISP@") 2 | (add-to-list 'auto-mode-alist '("\\.jl$" . julia-mode)) 3 | -------------------------------------------------------------------------------- /dev-lang/vtune/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | nbigaouette@gmail.com 6 | Nicolas Bigaouette 7 | 8 | 9 | -------------------------------------------------------------------------------- /dev-libs/fortrancl/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for dev-libs/fortrancl 2 | # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | 03 Mar 2013; Justin Lecher fortrancl-0.1_alpha3.ebuild, 6 | metadata.xml: 7 | Clean whitespace errors 8 | 9 | -------------------------------------------------------------------------------- /dev-libs/libcuda/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | alexxy@gentoo.org 6 | Alexey Shvetsov 7 | 8 | 9 | -------------------------------------------------------------------------------- /dev-libs/libgdev/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | alexxy@gentoo.org 6 | Alexey Shvetsov 7 | 8 | 9 | -------------------------------------------------------------------------------- /dev-libs/libpfm/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | alexxy@gentoo.org 7 | Alexey Shvetsov 8 | 9 | 10 | -------------------------------------------------------------------------------- /dev-libs/libunzip/Manifest: -------------------------------------------------------------------------------- 1 | DIST unzip552.tar.gz 1140291 SHA256 145d95e2ef1ef9add2e3c97d1340907e33ab8749eb1235372e7f0b7af600a8e9 2 | -------------------------------------------------------------------------------- /dev-libs/libunzip/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | -------------------------------------------------------------------------------- /dev-libs/papi/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for dev-libs/papi 2 | # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | *papi-5.1.0.2 (28 Feb 2013) 6 | 7 | 28 Feb 2013; Alexey Shvetsov +metadata.xml, 8 | +papi-5.1.0.2.ebuild: 9 | Initial import 10 | -------------------------------------------------------------------------------- /dev-libs/papi/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | alexxy@gentoo.org 7 | Alexey Shvetsov 8 | 9 | 10 | -------------------------------------------------------------------------------- /dev-libs/simclist/Manifest: -------------------------------------------------------------------------------- 1 | DIST simclist-1.6.tar.bz2 44280 SHA256 63b47211215466ddfba1643582cb3aaa7b5e9ca1cc5f247290e3199c4e29f147 2 | -------------------------------------------------------------------------------- /dev-ml/gsl-ocaml/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for dev-ml/gsl-ocaml 2 | # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | *gsl-ocaml-1.10.2 (11 Aug 2012) 6 | 7 | 11 Aug 2012; Guillaume Horel 8 | +gsl-ocaml-1.10.2.ebuild, +metadata.xml: 9 | new package from #390583 10 | 11 | -------------------------------------------------------------------------------- /dev-ml/gsl-ocaml/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | GSL interface for OCaml 7 | 8 | 9 | -------------------------------------------------------------------------------- /dev-ml/lacaml/files/API.odocl: -------------------------------------------------------------------------------- 1 | lib/Lacaml 2 | -------------------------------------------------------------------------------- /dev-ml/lacaml/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | BLAS/LAPACK-interface for OCaml 7 | 8 | 9 | -------------------------------------------------------------------------------- /dev-ml/mlgmpidl/Manifest: -------------------------------------------------------------------------------- 1 | DIST mlgmpidl-1.1.tgz 194002 SHA256 8990a56f4c1ff701bb922bacf7f23b40539d123216ac5f9fe0f35967735d6fc9 2 | -------------------------------------------------------------------------------- /dev-perl/BTLib/Manifest: -------------------------------------------------------------------------------- 1 | DIST BTLib-0.19.tar.gz 36283 SHA256 0acd6446031222b8fd5bd11eb3ec6c3164bc50491feef765c052689d9c3ee302 2 | -------------------------------------------------------------------------------- /dev-perl/BTLib/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | -------------------------------------------------------------------------------- /dev-perl/Bio-BigFile/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /dev-perl/Bio-DB-Das-Chado/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /dev-perl/DBIx-DBStag/Manifest: -------------------------------------------------------------------------------- 1 | DIST DBIx-DBStag-0.12.tar.gz 142945 SHA256 c2f07f42ffbbfb4256c1b66b4936bf9869acb7f4b058351290bbee4d719b1e67 2 | -------------------------------------------------------------------------------- /dev-perl/DBIx-DBStag/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /dev-perl/Lab-Instrument/Manifest: -------------------------------------------------------------------------------- 1 | DIST Lab-Instrument-2.01.tar.gz 46901 SHA256 1d772058fa45e5c6a3c63be598957aa9de46b1e0ae3d54564e5e2602f15b5379 2 | -------------------------------------------------------------------------------- /dev-perl/Lab-Instrument/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | mail@akhuettel.de 6 | 7 | 8 | -------------------------------------------------------------------------------- /dev-perl/Lab-Tools/Manifest: -------------------------------------------------------------------------------- 1 | DIST Lab-Tools-1.4.tar.gz 23609 SHA256 eeff55177c951dc9805fcdef467bd5c35ed6b56ea1fae3e9493aee5c4ae7b290 2 | -------------------------------------------------------------------------------- /dev-perl/Lab-Tools/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | -------------------------------------------------------------------------------- /dev-perl/Lab-VISA/Manifest: -------------------------------------------------------------------------------- 1 | DIST Lab-VISA-2.06.tar.gz 121217 SHA256 b945dbe147681a7afce1d277a27d7954135d818321b55f1217631df37c43bc2d 2 | -------------------------------------------------------------------------------- /dev-perl/Lab-VISA/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | mail@akhuettel.de 6 | 7 | 8 | -------------------------------------------------------------------------------- /dev-perl/Log-Cabin/Manifest: -------------------------------------------------------------------------------- 1 | DIST Log-Cabin-0.06.tar.gz 4425 SHA256 220494ed5e237e7263c665c5a4d809ddcd018a2f9e165cc871ef82e796096eb3 2 | -------------------------------------------------------------------------------- /dev-perl/Log-Cabin/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /dev-perl/Text-ParseWords/Manifest: -------------------------------------------------------------------------------- 1 | DIST Text-ParseWords-3.27.zip 9740 SHA256 4d4bceae6a957941c758ebd5a47b680f0f8964934b766d13ba2adc3e62b6676d 2 | -------------------------------------------------------------------------------- /dev-perl/Text-ParseWords/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /dev-perl/Time-Progress/Manifest: -------------------------------------------------------------------------------- 1 | DIST Time-Progress-1.7.tar.gz 4366 SHA256 7f823cfa9e294d3c45117ad2a82ef4830deb5689be6fe84fbd72cd37103b7a43 2 | -------------------------------------------------------------------------------- /dev-perl/Time-Progress/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /dev-perl/go-db-perl/Manifest: -------------------------------------------------------------------------------- 1 | DIST go-db-perl-0.04.tar.gz 512925 SHA256 8eb73d591ad767e7cf26def40cffd84833875f1ad51e456960b9ed73dc23641b 2 | -------------------------------------------------------------------------------- /dev-perl/go-db-perl/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | -------------------------------------------------------------------------------- /dev-perl/go-perl/Manifest: -------------------------------------------------------------------------------- 1 | DIST go-perl-0.13.tar.gz 806739 SHA256 392835fe0dd201a11b4f257bc10b8774cadc30dd93ef972fb65382b2a3557541 2 | -------------------------------------------------------------------------------- /dev-perl/go-perl/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /dev-perl/opal-client/Manifest: -------------------------------------------------------------------------------- 1 | DIST opal-perl-1.9.2.tar.gz 90429 SHA256 8ca385b66326f0dea53bd60d5169e862008b347fb2081098345004fe1d05fd75 2 | -------------------------------------------------------------------------------- /dev-perl/opal-client/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /dev-python/Forthon/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for dev-python/Forthon 2 | # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | 03 Mar 2013; Justin Lecher Forthon-0.8.11.ebuild, 6 | metadata.xml: 7 | Correct license name 8 | 9 | -------------------------------------------------------------------------------- /dev-python/Forthon/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | xarthisius@gentoo.org 6 | Kacper Kowalik 7 | 8 | 9 | -------------------------------------------------------------------------------- /dev-python/GOGrapher/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /dev-python/RecSQL/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | alexxy@gentoo.org 7 | Alexey Shvetsov 8 | 9 | 10 | -------------------------------------------------------------------------------- /dev-python/astropy/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for dev-python/astropy 2 | # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | 13 Jun 2013; Justin Lecher astropy-9999.ebuild, 6 | metadata.xml: 7 | Bump to EAPI=5 and distutils-r1.eclass 8 | 9 | -------------------------------------------------------------------------------- /dev-python/astropy/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-astronomy 5 | 6 | xarthisius@gentoo.org 7 | Kacper Kowalik 8 | 9 | 10 | -------------------------------------------------------------------------------- /dev-python/dimensionful/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | xarthisius@gentoo.org 6 | Kacper Kowalik 7 | 8 | 9 | -------------------------------------------------------------------------------- /dev-python/go-parser/Manifest: -------------------------------------------------------------------------------- 1 | DIST go-parser-r7.tgz 13561 SHA256 3f6d1e1311bbc99636c543d1845dcc2943d120c8c9eb61cc7fc3e7ee0eeedbf4 2 | -------------------------------------------------------------------------------- /dev-python/go-parser/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /dev-python/healpy/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for dev-python/healpy 2 | # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | *healpy-1.6.2 (17 Jun 2013) 6 | 7 | 17 Jun 2013; Sébastien Fabbro +healpy-1.6.2.ebuild, 8 | +metadata.xml: 9 | dev-python/healpy: Initial import 10 | -------------------------------------------------------------------------------- /dev-python/inference/Manifest: -------------------------------------------------------------------------------- 1 | DIST inference-0.4.tar.gz 132739 SHA256 78e14c4848bb7ab8bf139957de9c6579c8213bb9d449ec2bf61b168023adcfaf 2 | -------------------------------------------------------------------------------- /dev-python/omniorbpy/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /dev-python/opal-client/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | -------------------------------------------------------------------------------- /dev-python/pyhdf/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for dev-python/pyhdf 2 | # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | 14 Jun 2013; Justin Lecher pyhdf-0.8.3.ebuild, 6 | metadata.xml: 7 | Bump to EAPI=5 and distutils-r1.eclass 8 | 9 | -------------------------------------------------------------------------------- /dev-python/pythoncgns/Manifest: -------------------------------------------------------------------------------- 1 | DIST CGNS-2009.10.30.tar.gz 24185 SHA256 915c57cfbcaceecf8c352de03e96945388c1bd1e10c4b011ea5ac5231814011a 2 | -------------------------------------------------------------------------------- /dev-python/pythoncgns/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /dev-python/pythonocc/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /dev-python/ufl/Manifest: -------------------------------------------------------------------------------- 1 | DIST ufl-0.5.4.tar.gz 204883 SHA256 fc032d7a011406764ca3c466d194cfcf7ba165292e1a9da471cde7519ce1a960 2 | -------------------------------------------------------------------------------- /dev-tcltk/img_rotate/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /dev-tcltk/togl/Manifest: -------------------------------------------------------------------------------- 1 | DIST Togl-1.7.tar.gz 205532 SHA256 56b7580e3001cc4d334ff31bf6b9d730d05abb2faba7a3dbbc1c959ff7f7bcaf 2 | -------------------------------------------------------------------------------- /dev-tcltk/togl/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /dev-util/f90cache/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | ottxor@gentoo.org 6 | Christoph Junghans 7 | 8 | 9 | -------------------------------------------------------------------------------- /dev-util/ndiff/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | AstroFloyd@gmail.com 7 | AstroFloyd 8 | 9 | 10 | -------------------------------------------------------------------------------- /dev-util/smartgit/Manifest: -------------------------------------------------------------------------------- 1 | DIST smartgit-generic-1_0_2.tar.gz 5641079 SHA256 ec2fad2c9dc798cb29d5070e10bb4e369c6ff2f8a54ef1f181cc9258eaac0d6a 2 | -------------------------------------------------------------------------------- /dev-util/smartgit/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | SmartSVN is a powerful GUI SVN client written in Java 5 | 6 | -------------------------------------------------------------------------------- /licenses/CeCILL-1.1: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jhcloos/sci/1a21cdf6cdb90c46faf9beefcbe2809710b056af/licenses/CeCILL-1.1 -------------------------------------------------------------------------------- /licenses/CeCILL-2.0: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jhcloos/sci/1a21cdf6cdb90c46faf9beefcbe2809710b056af/licenses/CeCILL-2.0 -------------------------------------------------------------------------------- /media-gfx/PhiloGL/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | xarthisius@gentoo.org 6 | Kacper Kowalik 7 | 8 | 9 | -------------------------------------------------------------------------------- /media-libs/OpenMOIV/Manifest: -------------------------------------------------------------------------------- 1 | DIST OpenMOIV.src.1.0.3a.tar.bz2 327168 SHA256 91c6b24aceb72d5884b0291ae28fca358a78e1590ccd0554ef7e7f8a3ef6dbe8 2 | -------------------------------------------------------------------------------- /media-libs/OpenMOIV/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /media-libs/avbin-bin/Manifest: -------------------------------------------------------------------------------- 1 | DIST avbin-linux-x86-32-7.tar.gz 1499992 SHA256 218b1f40d54762cd7ad4382faf0c5242a8c18def076b67bd308f62ac34560b2f 2 | DIST avbin-linux-x86-64-7.tar.gz 1509724 SHA256 d60dd48be45024360cf6fc1fa16110e14057ab5f971d35384a79f49ac156d3f2 3 | -------------------------------------------------------------------------------- /media-libs/libgfx/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for media-gfx/libgfx 2 | # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | *libgfx-1.1.0 (17 May 2009) 6 | 7 | 17 May 2009; Justin Lecher (jlec) 8 | +files/1.1.0-gcc4.3.patch, +libgfx-1.1.0.ebuild, +metadata.xml: 9 | Initial setup 10 | 11 | -------------------------------------------------------------------------------- /media-libs/libgfx/Manifest: -------------------------------------------------------------------------------- 1 | DIST libgfx-1.1.0.tar.gz 145470 SHA256 2bd53940c068c40125a8cfebcbd519c10c8630f8bdf4ebe9f57d328c74ad0284 2 | -------------------------------------------------------------------------------- /media-libs/libgfx/files/1.1.0-gcc4.3.patch: -------------------------------------------------------------------------------- 1 | --- src/raster.cxx 2004-09-27 06:45:31.000000000 +0200 2 | +++ src/raster.cxx.new 2009-05-17 23:48:58.417607175 +0200 3 | @@ -9,7 +9,7 @@ 4 | #include 5 | #include 6 | 7 | -#include 8 | +#include 9 | #include 10 | 11 | namespace gfx 12 | -------------------------------------------------------------------------------- /media-libs/libgfx/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /metadata/.gitignore: -------------------------------------------------------------------------------- 1 | /cache 2 | /md5-cache 3 | -------------------------------------------------------------------------------- /net-firewall/gcb/Manifest: -------------------------------------------------------------------------------- 1 | DIST gcb-1.5.6.tar.gz 1326341 SHA256 315ac4f325060d7df7ae03361d959151619cb308841207322cc2bd91193054bb 2 | -------------------------------------------------------------------------------- /net-ftp/bbftp-client/Manifest: -------------------------------------------------------------------------------- 1 | DIST bbftp-client-3.2.0.tar.gz 233948 SHA256 b533de28f517671adad177532b6f4ae66c30e4ce3d2f558d1d7e6b172d96bcb6 2 | -------------------------------------------------------------------------------- /net-ftp/bbftp-server/Manifest: -------------------------------------------------------------------------------- 1 | DIST bbftp-server-3.2.0.tar.gz 222600 SHA256 04fbe472dc4c39f5b3e82520c08a084e8c4fd5301242c6bbb934d6984013b8ff 2 | -------------------------------------------------------------------------------- /net-misc/bbscp/Manifest: -------------------------------------------------------------------------------- 1 | DIST bbscp-1.0.4.tar.gz 17411 SHA256 c3abb35f905d90b4db75be11cbbcd4fa9b89d674bc1430d5fbe8e71557ca9642 2 | -------------------------------------------------------------------------------- /net-misc/bbscp/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | bbSCP is a wrapper that provides an SCP-like interface to bbFTP. 7 | 8 | 9 | -------------------------------------------------------------------------------- /perl-core/encoding-warnings/Manifest: -------------------------------------------------------------------------------- 1 | DIST encoding-warnings-0.11.tar.gz 16110 SHA256 67faf727b59ab1132d2b147bc1f927dc752897ce1f57b303efc46c3a969bf25e 2 | -------------------------------------------------------------------------------- /perl-core/encoding-warnings/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | mail@akhuettel.de 6 | 7 | 8 | -------------------------------------------------------------------------------- /profiles/profiles.desc: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /profiles/repo_name: -------------------------------------------------------------------------------- 1 | science 2 | -------------------------------------------------------------------------------- /profiles/updates/1Q-2011: -------------------------------------------------------------------------------- 1 | move www-apps/SwishE www-apps/py-swish-e 2 | move sys-cluster/os-mpi sys-cluster/native-mpi 3 | move sci-misc/freecad media-gfx/freecad 4 | move app-doc/votca-manual app-doc/votca-csg-manual 5 | move sci-chemistry/inchi sci-libs/inchi 6 | move sci-chemistry/stdinchi sci-libs/inchi 7 | -------------------------------------------------------------------------------- /profiles/updates/1Q-2012: -------------------------------------------------------------------------------- 1 | move sci-misc/simpy dev-python/simpy 2 | -------------------------------------------------------------------------------- /profiles/updates/2Q-2011: -------------------------------------------------------------------------------- 1 | move sys-infiniband/openib-diags sys-infiniband/infiniband-diags 2 | move sys-infiniband/openib-osm sys-infiniband/opensm 3 | move sys-infiniband/openib-perf sys-infiniband/perftest 4 | move sys-infiniband/openib-srptools sys-infiniband/srptools 5 | move sys-infiniband/openib-mvapich2 sys-cluster/mvapich2 6 | -------------------------------------------------------------------------------- /sci-astronomy/chealpix/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-astronomy/chealpix 2 | # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | *chealpix-3.11 (16 Jun 2013) 6 | 7 | 16 Jun 2013; Sébastien Fabbro +chealpix-3.11.ebuild, 8 | +metadata.xml: 9 | sci-astronomy/chealpix: Initial import 10 | -------------------------------------------------------------------------------- /sci-biology/BG7/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-biology/BG7 2 | # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | *BG7-9999 (29 Aug 2013) 6 | 7 | 29 Aug 2013; Martin Mokrejs +BG7-9999.ebuild: 8 | Initial, not yet working ebuild. 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/Gambit/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-biology/Gambit 2 | # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | 03 Mar 2013; Justin Lecher Gambit-0.4.145.ebuild, 6 | metadata.xml: 7 | Update to new qt deps names 8 | 9 | -------------------------------------------------------------------------------- /sci-biology/Gambit/Manifest: -------------------------------------------------------------------------------- 1 | DIST GambitDocumentation_v0.4.145.pdf 1061985 SHA256 f0d28fedab07007244a2a6f6292b7c445843a336878583ae177c22528ede30c9 2 | DIST Gambit_v0.4.145_src.tar.gz 246624 SHA256 1c1ed7fdb3b9a5007f2daeef2b96033d7145a767dd526339dbb928dd27626268 3 | -------------------------------------------------------------------------------- /sci-biology/Gambit/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/OBO-Edit/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/ONTO-PERL/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-biology/ONTO-PERL 2 | # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | 25 Jun 2011; Justin Lecher ONTO-PERL-1.31.ebuild: 6 | Cleaned ebuild, 'http://search.cpan.org/CPAN' found in thirdpartymirrors 7 | 8 | -------------------------------------------------------------------------------- /sci-biology/ONTO-PERL/Manifest: -------------------------------------------------------------------------------- 1 | DIST ONTO-PERL-1.31.tar.gz 721117 SHA256 89a85cbe2f7ced1a394d863d9b6fbc54fae2cc8a3c2531fcaaebaf50489866b8 2 | -------------------------------------------------------------------------------- /sci-biology/ONTO-PERL/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | -------------------------------------------------------------------------------- /sci-biology/YASRA/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/align_to_scf/Manifest: -------------------------------------------------------------------------------- 1 | DIST align_to_scf-1.06.tgz 25463 SHA256 792d5023d02570cfb8510adb102ddacc3795ef5689e91c96e9e56b304ec70ddb 2 | -------------------------------------------------------------------------------- /sci-biology/align_to_scf/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/amos-short/Manifest: -------------------------------------------------------------------------------- 1 | DIST AMOS-short.tgz 44462022 SHA256 8ff3317dfd2b86aa7ed658408687b7a259b1517b8c43678b9379ad4ccb5ffdf8 2 | -------------------------------------------------------------------------------- /sci-biology/amos-short/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/apollo/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-biology/apollo 2 | # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | 07 Feb 2012; Martin Mokrejs apollo-9999.ebuild: 6 | initial ebuild 7 | 8 | -------------------------------------------------------------------------------- /sci-biology/apollo/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/argo-bin/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-biology/argo-bin 2 | # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | 25 Jun 2011; Justin Lecher argo-bin-1.0.31.ebuild: 6 | Cleaned ebuild 7 | 8 | -------------------------------------------------------------------------------- /sci-biology/argo-bin/Manifest: -------------------------------------------------------------------------------- 1 | DIST argo.jar 26624770 SHA256 33ece2dba7ee5cc36f5aab99b3e7df2d641b261d86aacac00745e9d4a2e914cf 2 | -------------------------------------------------------------------------------- /sci-biology/argo-bin/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/argo/Manifest: -------------------------------------------------------------------------------- 1 | DIST workspace-2008-03-11.tgz 109194467 SHA256 0ee6acb0ebdc17cfbedfedb8559ba950ddd4c5c4ef5f7875fa93f3fad885b99e 2 | -------------------------------------------------------------------------------- /sci-biology/argo/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/artemis-bin/Manifest: -------------------------------------------------------------------------------- 1 | DIST artemis_compiled_v13.2.12.tar.gz 8935513 SHA256 71e8304947ecda531a7e2a8b2cce84a75c5ada19be43c854eb524012c872a094 2 | -------------------------------------------------------------------------------- /sci-biology/artemis-bin/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/artemis/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/autoeditor/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-biology/autoeditor 2 | # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | 24 Jun 2011; Justin Lecher autoeditor-1.20.ebuild: 6 | Shorten Summary 7 | 8 | -------------------------------------------------------------------------------- /sci-biology/autoeditor/Manifest: -------------------------------------------------------------------------------- 1 | DIST autoEditor-1.20-sample.tar.gz 71953287 SHA256 f25beb3668ab2b3f2018e5e3b9615995ba5a16b5ce002ff50806287f28f5ef25 2 | DIST autoEditor-1.20.tar.gz 2438903 SHA256 c0c399eda52a10deb0e0362b4caf909014768a4d08e90c900392cdf712cefd66 3 | -------------------------------------------------------------------------------- /sci-biology/bambus/Manifest: -------------------------------------------------------------------------------- 1 | DIST bambus-2.33.tar.gz 504535 SHA256 bc8e3c712719bccb00357001713e56f58aac57ae452fd73148eeccff291eefdc 2 | -------------------------------------------------------------------------------- /sci-biology/blasr/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | weaver@gentoo.org 6 | Andrey Kislyuk 7 | 8 | sci-biology 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/brat/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-biology/brat 2 | # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | 09 May 2010; Andrey Kislyuk ChangeLog: 6 | New package, ebuild written by me 7 | 8 | -------------------------------------------------------------------------------- /sci-biology/brat/Manifest: -------------------------------------------------------------------------------- 1 | DIST brat-1.1.13.tar.gz 2416868 SHA256 c36dba367a35767d2088d08b4b01f28090ac4990be4094e83a8ea84733e44df6 2 | -------------------------------------------------------------------------------- /sci-biology/brat/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | weaver@gentoo.org 6 | Andrey Kislyuk 7 | 8 | sci-biology 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/caftools/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-biology/caftools 2 | # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | 16 Jun 2013; Justin Lecher -caftools-2.0.ebuild, 6 | caftools-2.0.2.ebuild, metadata.xml: 7 | Drop old; Bump to EAPI=5 and fix license 8 | 9 | -------------------------------------------------------------------------------- /sci-biology/cap3-bin/Manifest: -------------------------------------------------------------------------------- 1 | DIST cap3.linux.i686_xeon64.tar 430080 SHA256 fd7112a89dd349e0d11820d4bfab34c3556eb570828f71a8db18b68bd6aa1c2c 2 | DIST cap3.linux.tar 409600 SHA256 49916f0ac2dc7b6f28fd88e79f98eb097e059839bd9311593ef3fc6f77bc4648 3 | -------------------------------------------------------------------------------- /sci-biology/cdbfasta/Manifest: -------------------------------------------------------------------------------- 1 | DIST cdbfasta.tar.gz 59735 SHA256 68767e8b2fb9de5a6d68ee16df73293f65e02f05cf2f747a9dd6b8854766722c 2 | -------------------------------------------------------------------------------- /sci-biology/cdbfasta/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/clover/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | maintainer-wanted@gentoo.org 7 | 8 | 9 | -------------------------------------------------------------------------------- /sci-biology/clview/Manifest: -------------------------------------------------------------------------------- 1 | DIST clview_linux_i386.tar.gz 1050318 SHA256 0ee2f0688afcf649b448662e792e5d44378e9d84d2141ecd3ad8c8d5c6a400e4 2 | DIST clview_src.tar.gz 62178 SHA256 52936fddb0284b1cf2515b4e57e01ee9ec2a58dab329e49204d70528c75d5bf2 3 | -------------------------------------------------------------------------------- /sci-biology/clview/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/codonw/Manifest: -------------------------------------------------------------------------------- 1 | DIST CodonWSourceCode_1_4_4.tar.gz 161908 SHA256 951e2a686f7849e0fa225b83b09842d4cf822ecafd67bff0438fc815512183b8 2 | -------------------------------------------------------------------------------- /sci-biology/codonw/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | weaver@gentoo.org 6 | Andrey Kislyuk 7 | 8 | sci-biology 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/consed-bin/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-biology/consed-bin 2 | # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | 03 Mar 2013; Justin Lecher consed-bin-20.ebuild, 6 | metadata.xml: 7 | Correct motif dep naming 8 | 9 | -------------------------------------------------------------------------------- /sci-biology/consed-bin/Manifest: -------------------------------------------------------------------------------- 1 | DIST consed-bin-20-linux.tar.gz 31407408 SHA256 ebde602163743d018ac8bf49f04ff0afbd0cccb3b7ef065a154943a68e95ad27 2 | DIST consed-bin-20-sources.tar.gz 31407408 SHA256 ebde602163743d018ac8bf49f04ff0afbd0cccb3b7ef065a154943a68e95ad27 3 | -------------------------------------------------------------------------------- /sci-biology/consed-bin/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | weaver@gentoo.org 6 | Andrey Kislyuk 7 | 8 | sci-biology 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/consed/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-biology/consed 2 | # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | 31 Oct 2012; Martin Mokrejs 6 | consed-20-r1.ebuild: 7 | renamed dependency from openmotif to motif consed-20-r1.ebuild 8 | 9 | -------------------------------------------------------------------------------- /sci-biology/consed/files/nLine.h.patch: -------------------------------------------------------------------------------- 1 | --- nLine.h.ori 2011-04-28 02:12:58.000000000 +0200 2 | +++ nLine.h 2011-04-28 02:13:43.000000000 +0200 3 | @@ -44,11 +44,11 @@ 4 | 5 | #ifdef DEFINE_nLine 6 | 7 | -int nLine; 8 | +long nLine; 9 | 10 | #else 11 | 12 | -extern int nLine; 13 | +extern long nLine; 14 | 15 | #endif 16 | 17 | 18 | -------------------------------------------------------------------------------- /sci-biology/consed/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | weaver@gentoo.org 6 | Andrey Kislyuk 7 | 8 | sci-biology 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/cutadapt/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/dawg/Manifest: -------------------------------------------------------------------------------- 1 | DIST dawg-1.1.1-release.tar.gz 213877 SHA256 dd621d7913fc1511b52ed2bdc5856e1e591464ddf8ee5c2e7eaa45ac81705286 2 | -------------------------------------------------------------------------------- /sci-biology/dawg/files/dawg-1.1.1-gcc43.patch: -------------------------------------------------------------------------------- 1 | --- src/dawg.h.orig 2008-06-24 10:30:30.000000000 -0400 2 | +++ src/dawg.h 2008-06-24 10:30:41.000000000 -0400 3 | @@ -77,7 +77,7 @@ 4 | 5 | 6 | #include 7 | -#include 8 | +#include 9 | #include 10 | #include 11 | #include 12 | -------------------------------------------------------------------------------- /sci-biology/dawg/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | -------------------------------------------------------------------------------- /sci-biology/embassy-cbstools/Manifest: -------------------------------------------------------------------------------- 1 | DIST embassy-cbstools-1.0.0-r3.tar.gz 418819 SHA256 7d0a0d6bc767063fd3ce7331e56642a84463afd48912748aaa556b29d3e80fd5 2 | -------------------------------------------------------------------------------- /sci-biology/embassy-cbstools/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | -------------------------------------------------------------------------------- /sci-biology/embassy-domainatrix/Manifest: -------------------------------------------------------------------------------- 1 | DIST embassy-domainatrix-0.1.0-r6.tar.gz 448550 SHA256 69f1e09da06d2501b0340e7d047b4c2e425259973c0bd474be4ca8aa8ab6b13c 2 | -------------------------------------------------------------------------------- /sci-biology/embassy-domainatrix/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | -------------------------------------------------------------------------------- /sci-biology/embassy-domalign/Manifest: -------------------------------------------------------------------------------- 1 | DIST embassy-domalign-0.1.0-r5.tar.gz 472143 SHA256 77f05f71e188307dbb2e4af0b2d32a6707cdc6678ee9e94f402b6a7277cca34f 2 | -------------------------------------------------------------------------------- /sci-biology/embassy-domalign/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | -------------------------------------------------------------------------------- /sci-biology/embassy-domsearch/Manifest: -------------------------------------------------------------------------------- 1 | DIST embassy-domsearch-0.1.0-r5.tar.gz 487462 SHA256 feca6144b758fed54ae61b6a7f36522e6e04e23eab875b953757a43af67e6e99 2 | -------------------------------------------------------------------------------- /sci-biology/embassy-domsearch/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | -------------------------------------------------------------------------------- /sci-biology/embassy-emnu/Manifest: -------------------------------------------------------------------------------- 1 | DIST embassy-emnu-1.05-r7.tar.gz 398394 SHA256 a8ec44ea1d708a9c728775a5c1a3849e4e78ae6c2825e76c76098b7b48e5c596 2 | -------------------------------------------------------------------------------- /sci-biology/embassy-emnu/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | -------------------------------------------------------------------------------- /sci-biology/embassy-esim4/Manifest: -------------------------------------------------------------------------------- 1 | DIST embassy-esim4-1.0.0-r7.tar.gz 437980 SHA256 f48486152d020ba2fdb1c6d2fa3787d326ddb503a8df9ffaa505579b994112b2 2 | -------------------------------------------------------------------------------- /sci-biology/embassy-esim4/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | -------------------------------------------------------------------------------- /sci-biology/embassy-hmmer/Manifest: -------------------------------------------------------------------------------- 1 | DIST embassy-hmmer-2.3.2-r4.tar.gz 583748 SHA256 3c13568d916e4cb2e1fa4f77c8f7df0140c2785c0a3482b73cde4c83c80bfbf8 2 | -------------------------------------------------------------------------------- /sci-biology/embassy-hmmer/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | -------------------------------------------------------------------------------- /sci-biology/embassy-iprscan/Manifest: -------------------------------------------------------------------------------- 1 | DIST embassy-iprscan-4.3.1-r2.tar.gz 370376 SHA256 e4f2bc429a13a62da004fc202a585525e0e9610f670ac206f6ebc1a27bc3516c 2 | -------------------------------------------------------------------------------- /sci-biology/embassy-iprscan/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | -------------------------------------------------------------------------------- /sci-biology/embassy-memenew/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | -------------------------------------------------------------------------------- /sci-biology/embassy-mira/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | -------------------------------------------------------------------------------- /sci-biology/embassy-mse/Manifest: -------------------------------------------------------------------------------- 1 | DIST embassy-mse-3.0.0.tar.gz 435315 SHA256 f3bb205b197d4cc4ad7d6ee8e3696eb59d84a8b60a8369d4a645871d0c9619c3 2 | -------------------------------------------------------------------------------- /sci-biology/embassy-mse/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | -------------------------------------------------------------------------------- /sci-biology/embassy-phylipnew/Manifest: -------------------------------------------------------------------------------- 1 | DIST embassy-phylipnew-3.69.tar.gz 1667760 SHA256 2e74ce4f70ad5421ea81e84c199a08bfb4a236e2cf2769be4f309c4badd1302b 2 | -------------------------------------------------------------------------------- /sci-biology/embassy-phylipnew/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | -------------------------------------------------------------------------------- /sci-biology/embassy-signature/Manifest: -------------------------------------------------------------------------------- 1 | DIST embassy-signature-0.1.0-r5.tar.gz 594872 SHA256 0be483439379ef985dcf9a63a3989ef372fc10d7695bf32106f246881c567e0c 2 | -------------------------------------------------------------------------------- /sci-biology/embassy-signature/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | -------------------------------------------------------------------------------- /sci-biology/embassy-structure/Manifest: -------------------------------------------------------------------------------- 1 | DIST embassy-structure-0.1.0-r5.tar.gz 561513 SHA256 3f6007a87c788acebca7642ed513f017e676d6de13febec8e139dfbaa5b88722 2 | -------------------------------------------------------------------------------- /sci-biology/embassy-structure/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | -------------------------------------------------------------------------------- /sci-biology/embassy-topo/Manifest: -------------------------------------------------------------------------------- 1 | DIST embassy-topo-2.0.0.tar.gz 386287 SHA256 023e1f1e92e0372c4029c9e19043af0416d0e294440bb368d30126c5ed330691 2 | -------------------------------------------------------------------------------- /sci-biology/embassy-topo/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | -------------------------------------------------------------------------------- /sci-biology/embassy-vienna/Manifest: -------------------------------------------------------------------------------- 1 | DIST embassy-vienna-1.7.2-r2.tar.gz 852330 SHA256 568f5217068906c4030ae52d8fd4bf27e4c82efe8b93a65ccd134e828de28f5f 2 | -------------------------------------------------------------------------------- /sci-biology/embassy-vienna/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | -------------------------------------------------------------------------------- /sci-biology/embassy/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | -------------------------------------------------------------------------------- /sci-biology/erpin/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | weaver@gentoo.org 6 | Andrey Kislyuk 7 | 8 | sci-biology 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/est2uni/files/99est2uni: -------------------------------------------------------------------------------- 1 | EST2UNI_PERL=/opt/est2uni 2 | PERL5LIB=$PERL5LIB:/opt/est2uni 3 | PATH=$PATH:/opt/est2uni 4 | -------------------------------------------------------------------------------- /sci-biology/est2uni/files/est2uni: -------------------------------------------------------------------------------- 1 | EST2UNI_PERL=/opt/est2uni 2 | PERL5LIB=$PERL5LIB:/opt/est2uni 3 | PATH=$PATH:/opt/est2uni 4 | -------------------------------------------------------------------------------- /sci-biology/est2uni/files/mysql_fixes.sql: -------------------------------------------------------------------------------- 1 | alter table db change kind kind enum('dna','pep') default null; 2 | alter table db change blast_program blast_program enum('blastn', 'blastp', 'blastx', 'tblastn', 'tblastx') default null; 3 | alter table db change rec_sim_type rec_sim_type enum('orthologue', 'synonymous') default null; 4 | -------------------------------------------------------------------------------- /sci-biology/est2uni/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/fastdnaml/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-biology/fastdnaml 2 | # Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | 07 Jul 2008; weaver +metadata.xml, 6 | +fastdnaml-1.2.2.ebuild: 7 | New ebuild, bug 114089 8 | 9 | -------------------------------------------------------------------------------- /sci-biology/fastdnaml/Manifest: -------------------------------------------------------------------------------- 1 | DIST fastdnaml_1.2.2-8.diff.gz 6508 SHA256 11b4b4ab18378d4a58fa7c290cf8121a49392768765fee70983b1d45ee70e294 2 | DIST fastdnaml_1.2.2.orig.tar.gz 70005 SHA256 34690ec9a8e2fe1d86bea4a7cb10f7bc47e5e4c30719e1c9451210df4f160180 3 | -------------------------------------------------------------------------------- /sci-biology/fastdnaml/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | weaver@gentoo.org 6 | Andrey Kislyuk 7 | 8 | sci-biology 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/gap2caf/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-biology/gap2caf 2 | # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | 16 Jun 2013; Justin Lecher gap2caf-2.1.0.ebuild, 6 | metadata.xml: 7 | Bump to EAPI=5 and fix license; make it build with eautoreconf 8 | 9 | -------------------------------------------------------------------------------- /sci-biology/gap2caf/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/gbench/Manifest: -------------------------------------------------------------------------------- 1 | DIST gbench-src-2.3.2.tgz 23329652 SHA256 ea45974d4b843a0033c587b575cb22388de96d2e300e1bedc8e16a11d9e154be 2 | -------------------------------------------------------------------------------- /sci-biology/gbench/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | -------------------------------------------------------------------------------- /sci-biology/gbrowse/files/gbrowse-slave.default: -------------------------------------------------------------------------------- 1 | #!/bin/sh 2 | 3 | export PERL5LIB=$PERL5LIB 4 | 5 | DAEMON=$INSTALLSCRIPT/gbrowse_slave 6 | USER=$WWWUSER 7 | PRELOAD=$CONF/slave_preload.conf 8 | RUNDIR=/var/run/gbrowse 9 | LOGDIR=/var/log/gbrowse 10 | PORT="8101 8102 8103" 11 | VERBOSITY=3 12 | NICE=0 13 | -------------------------------------------------------------------------------- /sci-biology/genepop/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-biology/genepop 2 | # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | 26 Sep 2009; Andrey Kislyuk ChangeLog: 6 | New package, ebuild written by me 7 | 8 | -------------------------------------------------------------------------------- /sci-biology/genepop/Manifest: -------------------------------------------------------------------------------- 1 | DIST genepop-4.0.10.zip 843785 SHA256 22c8134b6be30e9b6983e289ad97bc9e096cc5fed363d9650d9623e21d34a3d2 2 | -------------------------------------------------------------------------------- /sci-biology/genepop/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | weaver@gentoo.org 6 | Andrey Kislyuk 7 | 8 | sci-biology 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/generecon/Manifest: -------------------------------------------------------------------------------- 1 | DIST generecon-1.2.1.tar.gz 239507 SHA256 2a6230891ca4d42408a98afdd820da56c26c225625fed03d5a9b4c0b6c1cbb48 2 | -------------------------------------------------------------------------------- /sci-biology/generecon/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | lucas.chiesa@gmail.com 7 | Lucas Chiesa 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/genseed/Manifest: -------------------------------------------------------------------------------- 1 | DIST genseed-1.0.22.tar.gz 13923 SHA256 586da822bfabe27c183bc0f83c8b4c6b0a29accae68d0ccc101c2d33638ced5d 2 | -------------------------------------------------------------------------------- /sci-biology/genseed/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/grappa/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-biology/grappa 2 | # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | 14 Jul 2009; Andrey Kislyuk ChangeLog: 6 | New package, ebuild written by Pablo Nehab-Hess 7 | and me 8 | 9 | -------------------------------------------------------------------------------- /sci-biology/grappa/Manifest: -------------------------------------------------------------------------------- 1 | DIST GRAPPA20.tar.gz 172261 SHA256 19b3c5ab21c845eaf4fcf56fcf09a15db84597d8438155bb463d8f3e1bb51103 2 | -------------------------------------------------------------------------------- /sci-biology/grappa/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | weaver@gentoo.org 6 | Andrey Kislyuk 7 | 8 | sci-biology 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/hydra-sv/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-biology/hydra-sv 2 | # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | 03 Mar 2013; Justin Lecher hydra-sv-0.5.3.ebuild, 6 | +metadata.xml: 7 | Add metadata.xml; move to EAPI=5; cleaned ebuild syntax 8 | 9 | -------------------------------------------------------------------------------- /sci-biology/hydra-sv/Manifest: -------------------------------------------------------------------------------- 1 | DIST Hydra.v0.5.3.tar.gz 228772 SHA256 0d03168f1ab6cec69108730c5747d310ff54023294bba67de77a9d3eebdcfacd 2 | -------------------------------------------------------------------------------- /sci-biology/hydra-sv/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /sci-biology/igv/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-biology/igv 2 | # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | 08 Jan 2012; Andrey Kislyuk ChangeLog: 6 | New package, ebuild written by me 7 | 8 | -------------------------------------------------------------------------------- /sci-biology/igv/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | weaver@gentoo.org 6 | Andrey Kislyuk 7 | 8 | sci-biology 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/jalview/Manifest: -------------------------------------------------------------------------------- 1 | DIST jalview_2_6_1.tar.gz 16315652 SHA256 65f211e5aff682b8bc3f36c0b24051c38fd1f66fe4e45bb94d20ee84320c8250 2 | -------------------------------------------------------------------------------- /sci-biology/jalview/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | weaver@gentoo.org 6 | Andrey Kislyuk 7 | 8 | sci-biology 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/lastz/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/libgtextutils/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/lucy/Manifest: -------------------------------------------------------------------------------- 1 | DIST lucy1.20.tar.gz 1457619 SHA256 e06313f6d60b1b1429aad6c86c02df22edc6337613fafa5db0a09a09c7a35af3 2 | -------------------------------------------------------------------------------- /sci-biology/lucy/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/manatee-igs/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/manatee-jcvi/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/mavid/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-biology/mavid 2 | # Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | 08 Jul 2008; weaver +metadata.xml, 6 | +mavid-2.0.4.ebuild: 7 | New ebuild, bug 207250 8 | 9 | -------------------------------------------------------------------------------- /sci-biology/mavid/Manifest: -------------------------------------------------------------------------------- 1 | DIST mavid-package-2.0.4.tar.gz 85863 SHA256 9cfb216635ba463e8cb6de4e5e661c9e9c6d408af50a449af018ebfd11cf896a 2 | -------------------------------------------------------------------------------- /sci-biology/mavid/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | weaver@gentoo.org 6 | Andrey Kislyuk 7 | 8 | sci-biology 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/merlin/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-biology/merlin 2 | # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | 21 Apr 2009; Andrey Kislyuk ChangeLog: 6 | New package, bug 121921, thanks to Neil 7 | 8 | -------------------------------------------------------------------------------- /sci-biology/merlin/Manifest: -------------------------------------------------------------------------------- 1 | DIST merlin-1.1.2.tar.gz 609007 SHA256 aa3c087b1c717209389705bf2ace4c24884575014a561dff250c0be93fe1e411 2 | -------------------------------------------------------------------------------- /sci-biology/merlin/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | weaver@gentoo.org 6 | Andrey Kislyuk 7 | 8 | sci-biology 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/mira/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/miranda/Manifest: -------------------------------------------------------------------------------- 1 | DIST miRanda-aug2010.tar.gz 198538 SHA256 a671da562cf4636ef5085b27349df2df2f335774663fd423deb08f31212ec778 2 | -------------------------------------------------------------------------------- /sci-biology/miranda/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | weaver@gentoo.org 6 | Andrey Kislyuk 7 | 8 | sci-biology 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/mosaik/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | weaver@gentoo.org 6 | Andrey Kislyuk 7 | 8 | sci-biology 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/mrbayes/Manifest: -------------------------------------------------------------------------------- 1 | DIST mrbayes-3.1.2.tar.gz 545968 SHA256 c60253de1980c9f0a0eb684fffe7ba428fda7c39a3edcb6acf384b5e1443f2f4 2 | -------------------------------------------------------------------------------- /sci-biology/mreps/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-biology/mreps 2 | # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | 04 Feb 2009; weaver ChangeLog: 6 | New package sci-biology/mreps, bug 257676 7 | 8 | -------------------------------------------------------------------------------- /sci-biology/mreps/Manifest: -------------------------------------------------------------------------------- 1 | DIST mreps-2.5.tar.gz 28017 SHA256 fa39c37787311903ce93e1ab519dc00ca0b104285beae400aa5f72e148d17a58 2 | -------------------------------------------------------------------------------- /sci-biology/mreps/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | weaver@gentoo.org 6 | Andrey Kislyuk 7 | 8 | sci-biology 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/mrfast/Manifest: -------------------------------------------------------------------------------- 1 | DIST mrfast-2.1.0.3.tar.gz 42853 SHA256 2e96e908819ef4b982dd749444fe7b7a5198a0d8df1e4edb475394091c398f4a 2 | -------------------------------------------------------------------------------- /sci-biology/mrfast/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | weaver@gentoo.org 6 | Andrey Kislyuk 7 | 8 | sci-biology 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/mrsfast/Manifest: -------------------------------------------------------------------------------- 1 | DIST mrsfast-2.3.0.2.zip 37190 SHA256 2b08cb0c923d479f87c8224351c8e478645a06032f6e9f886fa713b2aa780441 2 | -------------------------------------------------------------------------------- /sci-biology/mrsfast/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | weaver@gentoo.org 6 | Andrey Kislyuk 7 | 8 | sci-biology 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/ncbi-tools++/files/disable-testsuite-compilation.txt: -------------------------------------------------------------------------------- 1 | .* 2 | -.*/test 3 | -.*/unit_test 4 | -------------------------------------------------------------------------------- /sci-biology/nrcl/Manifest: -------------------------------------------------------------------------------- 1 | DIST gclib.tar.gz 82727 SHA256 0c7f21fc92b033cd442b672e9014e3ffb9f2de97769ca525715692ed9359439b 2 | DIST nrcl-110625.tar.gz 14782 SHA256 8795728d60416d1329a352479335b084d3627af8e6ba5e4ba043041970886f46 3 | -------------------------------------------------------------------------------- /sci-biology/nrcl/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/perlprimer/Manifest: -------------------------------------------------------------------------------- 1 | DIST perlprimer-1.1.17.tar.bz2 355360 SHA256 7325af199744bdbffd499186548f66b82a96898277d88d2fd2df1852bfa19f3c 2 | -------------------------------------------------------------------------------- /sci-biology/perlprimer/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | -------------------------------------------------------------------------------- /sci-biology/proda/Manifest: -------------------------------------------------------------------------------- 1 | DIST proda_1_0.tar.gz 38868 SHA256 439a93bf35e1a29ac1d5dde51e61f2cb174618596afaaaaa27d33a8ea1868a08 2 | -------------------------------------------------------------------------------- /sci-biology/proda/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | -------------------------------------------------------------------------------- /sci-biology/psx/Manifest: -------------------------------------------------------------------------------- 1 | DIST psx.tar.gz 7797 SHA256 6759f1001be93fcfca9cebd0c764088c4942f2d7feee100d10cf2fbb39e4cd5a 2 | -------------------------------------------------------------------------------- /sci-biology/psx/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/psychopy/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-biology/psychopy 2 | # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | 10 Jun 2013; Justin Lecher psychopy-1.75.01.ebuild, 6 | psychopy-9999.ebuild, metadata.xml: 7 | Add missing python use dep, move to virtual/python-imaging 8 | 9 | -------------------------------------------------------------------------------- /sci-biology/psychopy/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | h.chr@mail.ru 6 | TheChymera 7 | 8 | 9 | -------------------------------------------------------------------------------- /sci-biology/pybrain/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /sci-biology/quicktree/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | weaver@gentoo.org 6 | Andrey Kislyuk 7 | 8 | sci-biology 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/rnaplex/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-biology/rnaplex 2 | # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | 29 Apr 2009; Andrey Kislyuk ChangeLog: 6 | New package, ebuild written by me 7 | 8 | -------------------------------------------------------------------------------- /sci-biology/rnaplex/Manifest: -------------------------------------------------------------------------------- 1 | DIST RNAplex-0.2.tar.gz 581128 SHA256 7907873009c8fc03b1918400bb82122774bc5df2602adc1426c5686a0b3f37de 2 | -------------------------------------------------------------------------------- /sci-biology/rnaplex/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | weaver@gentoo.org 6 | Andrey Kislyuk 7 | 8 | sci-biology 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/roche454ace2caf/Manifest: -------------------------------------------------------------------------------- 1 | DIST roche454ace2gap-2010-12-08.tgz 261317 SHA256 aee60307eb8f9369ed0b17599c946e1b465c71ad122563b216af453e4f30ea93 2 | -------------------------------------------------------------------------------- /sci-biology/roche454ace2caf/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/sclust/Manifest: -------------------------------------------------------------------------------- 1 | DIST cdbfasta.tar.gz 59735 SHA256 68767e8b2fb9de5a6d68ee16df73293f65e02f05cf2f747a9dd6b8854766722c 2 | DIST sclust.tar.gz 13467 SHA256 2ec82d2f8751188a7b774e2335839ba931dcecec82d68f7d755ba1c871ab4f9c 3 | -------------------------------------------------------------------------------- /sci-biology/sclust/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/seqclean/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/sequin/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | -------------------------------------------------------------------------------- /sci-biology/sff_dump/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-biology/sff_dump 2 | # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | 24 Jun 2011; Justin Lecher sff_dump-1.04.ebuild: 6 | Some ebuild cleaning 7 | 8 | -------------------------------------------------------------------------------- /sci-biology/sff_dump/Manifest: -------------------------------------------------------------------------------- 1 | DIST sff_dump-1.04.tgz 55640 SHA256 94bfeb55bc146f2e0183a0b85622e3fa19772d4d2fb324332d72f4cc5a4104ba 2 | -------------------------------------------------------------------------------- /sci-biology/sff_dump/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/signalp/Manifest: -------------------------------------------------------------------------------- 1 | DIST signalp-3.0.Linux.tar.Z 1216617 SHA256 260c2e5bd945b386e833a7b7326cff6d7332302868e99c0aeae306212047c0c2 2 | -------------------------------------------------------------------------------- /sci-biology/signalp/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | weaver@gentoo.org 6 | Andrey Kislyuk 7 | 8 | sci-biology 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/smalt-bin/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/sra_sdk/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/ssaha2-bin/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/staden/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/swissknife/Manifest: -------------------------------------------------------------------------------- 1 | DIST Swissknife_1.67.tar.gz 700161 SHA256 ca1f99be948648e69ea27d51b75a9ca545136f53981cfe2aa6ebe99bf9a74281 2 | -------------------------------------------------------------------------------- /sci-biology/swissknife/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | -------------------------------------------------------------------------------- /sci-biology/symap/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-biology/symap 2 | # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | *symap-4.0 (29 Aug 2013) 6 | 7 | 29 Aug 2013; Martin Mokrejs +symap-4.0.ebuild: 8 | Not yet working. 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/tablet-bin/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/tclust/Manifest: -------------------------------------------------------------------------------- 1 | DIST gclib-110625.tar.gz 82727 SHA256 0c7f21fc92b033cd442b672e9014e3ffb9f2de97769ca525715692ed9359439b 2 | DIST tclust-110625.tar.gz 9521 SHA256 d222a7109ec135d5e80767046c47aa6d4201ae779e5d516771b377dbbd261798 3 | -------------------------------------------------------------------------------- /sci-biology/tclust/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/tgicl/Manifest: -------------------------------------------------------------------------------- 1 | DIST TGICL-2.1.tar.gz 2925009 SHA256 02682846db9c28a78f5bcfc4ea715dd9e4de8c68b02474d8088831355a3ec989 2 | -------------------------------------------------------------------------------- /sci-biology/tgicl/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/tigr-assembler/Manifest: -------------------------------------------------------------------------------- 1 | DIST TIGR_Assembler_v2.tar.gz 3252950 SHA256 b5b660db388788173f7bd9778fe9b1e904bed7f6a464ab6cc92cd4608e70fd42 2 | -------------------------------------------------------------------------------- /sci-biology/tigr-foundation-libs/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-biology/tigr-foundation-libs 2 | # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | 24 Jun 2011; Justin Lecher 6 | tigr-foundation-libs-2.0-r1.ebuild: 7 | Some ebuild cleaning 8 | 9 | -------------------------------------------------------------------------------- /sci-biology/tigr-foundation-libs/Manifest: -------------------------------------------------------------------------------- 1 | DIST autoEditor-1.20.tar.gz 2438903 SHA256 c0c399eda52a10deb0e0362b4caf909014768a4d08e90c900392cdf712cefd66 2 | -------------------------------------------------------------------------------- /sci-biology/tigr-foundation-libs/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/tmhmm/Manifest: -------------------------------------------------------------------------------- 1 | DIST tmhmm-2.0c.Linux.tar.gz 191561 SHA256 761a87ca82c174e0e6660c5065f257ef0b201fab98f934e1342291e4e673ca40 2 | -------------------------------------------------------------------------------- /sci-biology/tmhmm/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | weaver@gentoo.org 6 | Andrey Kislyuk 7 | 8 | sci-biology 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/twinscan/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | weaver@gentoo.org 6 | Andrey Kislyuk 7 | 8 | sci-biology 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/wcd/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-biology/zmsort/Manifest: -------------------------------------------------------------------------------- 1 | DIST gclib-110625.tar.gz 82727 SHA256 0c7f21fc92b033cd442b672e9014e3ffb9f2de97769ca525715692ed9359439b 2 | DIST zmsort-110625.tar.gz 6192 SHA256 8267592ec5ddb070a5feb07fcf475ce13ec28cdda33d685a218098bd6bc2962f 3 | -------------------------------------------------------------------------------- /sci-biology/zmsort/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-biology 5 | 6 | mmokrejs@fold.natur.cuni.cz 7 | Martin Mokrejs 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-chemistry/GromacsWrapper/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | alexxy@gentoo.org 7 | Alexey Shvetsov 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-chemistry/almost/Manifest: -------------------------------------------------------------------------------- 1 | DIST almost-1.0.3-090822.tar.gz 10973194 SHA256 1e6351cc9de342c2d1ce64b4c44b66b482f7c2267dc0eca39ca2452e7b33422a 2 | -------------------------------------------------------------------------------- /sci-chemistry/almost/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | jlec@gentoo.org 7 | Justin Lecher 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-chemistry/ambertools/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | alexxy@gentoo.org 7 | Alexey Shvetsov 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-chemistry/bist/Manifest: -------------------------------------------------------------------------------- 1 | DIST bist-0.5.1.tar.gz 766731 SHA256 78809230e2bcfffefaf8f95d85740d94cf2d10b4dd0d746f28cf1e82e4fc6cd5 2 | -------------------------------------------------------------------------------- /sci-chemistry/burrow-owl/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/camshift/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/chemBuild/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/chimera-bin/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/chooch/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/cnsface/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/concoord/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | jlec@gentoo.org 7 | 8 | 9 | -------------------------------------------------------------------------------- /sci-chemistry/coot/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | jlec@gentoo.org 7 | Justin Lecher 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-chemistry/cs-rosetta/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/curvefit/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/direx/Manifest: -------------------------------------------------------------------------------- 1 | DIST direx-0.2-rev92-linux.tgz 1096211 SHA256 567741da0d94db38ca0576b73498c3e5667e8d5bb8b7241d9dc5664eca91a23b 2 | -------------------------------------------------------------------------------- /sci-chemistry/direx/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/dl_poly/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | ottxor@gentoo.org 7 | Christoph Junghans 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-chemistry/drawxtl/Manifest: -------------------------------------------------------------------------------- 1 | DIST DRAWxtl44.tar.gz 4214313 SHA256 6fc92098290bcf319f8b3002d017d83d052e276693d012d84c75e3c0ff319c92 2 | DIST DRAWxtl54.tar.gz 4284006 SHA256 6bf11e7a0aff0a32daef54b9d90f6ffe88ba3b1a61ff2f9f8aa1dfc85b2660d6 3 | -------------------------------------------------------------------------------- /sci-chemistry/dssp2pdb/Manifest: -------------------------------------------------------------------------------- 1 | DIST dssp2pdb-0.03.tar 10240 SHA256 4ec79fdd7223a6125d5ab221438ca9d9747e293c37bcfc5b67981e678280ec61 2 | -------------------------------------------------------------------------------- /sci-chemistry/dssp2pdb/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/hydronmr/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/jana2000/Manifest: -------------------------------------------------------------------------------- 1 | DIST jana2000.tar.gz 3261905 SHA256 4b1369889882d4a9b3331c870a37d76ec9aeee94a9959581b08dbb1f8f4bf71a 2 | -------------------------------------------------------------------------------- /sci-chemistry/jana2000/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/jligand/Manifest: -------------------------------------------------------------------------------- 1 | DIST JLigand.1.0.19.tar.gz 64648 SHA256 4ca4df90d43843b246d6979c960cb40a58a1e7aaab7469de5078fd4aba91ea51 2 | -------------------------------------------------------------------------------- /sci-chemistry/jligand/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/ligplot+/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-chemistry/ligplot+ 2 | # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | *ligplot+-1.4 (30 Aug 2012) 6 | 7 | 30 Aug 2012; Justin Lecher +ligplot+-1.4.ebuild, 8 | +metadata.xml: 9 | New addition 10 | 11 | -------------------------------------------------------------------------------- /sci-chemistry/ligplot+/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/mage/Manifest: -------------------------------------------------------------------------------- 1 | DIST mage.6.44.060606.src.tgz 726357 SHA256 c812202138cfee6b6434c51206286d460e83a12828e694013ecb16f2d5e839b3 2 | -------------------------------------------------------------------------------- /sci-chemistry/mage/files/digest-mage-6.44.060606: -------------------------------------------------------------------------------- 1 | MD5 aa49ae2cd466d718891391f593202f97 mage.6.44.060606.src.tgz 726357 2 | RMD160 08305d65dd61ed573c67e58975a611439235e9f5 mage.6.44.060606.src.tgz 726357 3 | SHA256 c812202138cfee6b6434c51206286d460e83a12828e694013ecb16f2d5e839b3 mage.6.44.060606.src.tgz 726357 4 | -------------------------------------------------------------------------------- /sci-chemistry/mage/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/mddnmr/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/mgltools-autodocktools/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/mgltools-bhtree/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/mgltools-cadd/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/mgltools-cmolkit/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/mgltools-dejavu/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/mgltools-geomutils/files/1.5.4-impl-dec.patch: -------------------------------------------------------------------------------- 1 | diff --git a/src/efit/efit.c b/src/efit/efit.c 2 | index cfdf7b4..ef71e37 100644 3 | --- a/src/efit/efit.c 4 | +++ b/src/efit/efit.c 5 | @@ -6,6 +6,7 @@ 6 | 7 | #include 8 | #include 9 | +#include 10 | 11 | #define EFIT_MAIN 1 12 | 13 | -------------------------------------------------------------------------------- /sci-chemistry/mgltools-geomutils/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/mgltools-gle/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/mgltools-mglutil/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/mgltools-molkit/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/mgltools-networkeditor/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/mgltools-opengltk/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/mgltools-pmv/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/mgltools-pyautodock/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/mgltools-pybabel/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/mgltools-pyglf/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/mgltools-qslimlib/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/mgltools-scenario2/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/mgltools-sff/files/1.5.4-impl-dec.patch: -------------------------------------------------------------------------------- 1 | diff --git a/src/bhtree.c b/src/bhtree.c 2 | index 1db701a..cb16afb 100644 3 | --- a/src/bhtree.c 4 | +++ b/src/bhtree.c 5 | @@ -38,6 +38,7 @@ 6 | */ 7 | #include 8 | #include 9 | +#include 10 | #include "bhtree.h" 11 | 12 | /* Barnes - Hut Trees ? */ 13 | -------------------------------------------------------------------------------- /sci-chemistry/mgltools-sff/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/mgltools-support/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/mgltools-symserv/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/mgltools-utpackages/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/mgltools-viewer-framework/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/mgltools-vision/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/mgltools-visionlib/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/mgltools-volume/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/mgltools-webservices/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/mgltools/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/mics/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-chemistry/mics 2 | # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | *mics-1.00.2011.327.12.00 (18 Jun 2013) 6 | 7 | 18 Jun 2013; Justin Lecher 8 | +mics-1.00.2011.327.12.00.ebuild, +metadata.xml: 9 | New package 10 | 11 | -------------------------------------------------------------------------------- /sci-chemistry/mics/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/modelfree/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | jlec@gentoo.org 7 | 8 | 9 | -------------------------------------------------------------------------------- /sci-chemistry/modeller/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/mtz2hkl/Manifest: -------------------------------------------------------------------------------- 1 | DIST mtz2hkl_v0.3.tar.gz 11284 SHA256 10109ef7659acea7ab2b75b18dae00f7bb29907b579523d8735c0621b4924cce 2 | -------------------------------------------------------------------------------- /sci-chemistry/mtz2hkl/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/mtz2sca/Manifest: -------------------------------------------------------------------------------- 1 | DIST mtz2sca_v0.3.tar.gz 17190 SHA256 05a2bd7b34f9edba10ded3e7627cf1a7ea312b80f746186b579ebcfefeb18ac1 2 | -------------------------------------------------------------------------------- /sci-chemistry/mtz2sca/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/nMOLDYN/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | alexxy@gentoo.org 7 | Alexey Shvetsov 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-chemistry/nmrpipe/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | jlec@gentoo.org 7 | Justin Lecher 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-chemistry/nmrview/files/nmrview.sh: -------------------------------------------------------------------------------- 1 | #!/bin/bash 2 | 3 | export NMRVIEW5HOME="/opt/nmrview" 4 | export TK_LIBRARY="/opt/nmrview/tk8.4" 5 | export TCL_LIBRARY="/opt/nmrview/tcl8.4" 6 | /opt/nmrview/nmrview5_2_2_01_linux 7 | -------------------------------------------------------------------------------- /sci-chemistry/nmrview/files/nmrview.sh-r1: -------------------------------------------------------------------------------- 1 | #!/bin/bash 2 | 3 | export NMRVIEW5HOME="/opt/nmrview" 4 | export TK_LIBRARY="/opt/nmrview/tk8.4" 5 | export TCL_LIBRARY="/opt/nmrview/tcl8.4" 6 | /opt/nmrview/nmrview5_2_2_01_linux $@ 7 | -------------------------------------------------------------------------------- /sci-chemistry/nmrview/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | jlec@gentoo.org 7 | Justin Lecher 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-chemistry/panav/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-chemistry/panav 2 | # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | *panav-0.20130730 (30 Jul 2013) 6 | 7 | 30 Jul 2013; Justin Lecher +panav-0.20130730.ebuild, 8 | +metadata.xml: 9 | New addition written by me 10 | 11 | -------------------------------------------------------------------------------- /sci-chemistry/phenix-bin/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/polygon/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/pymol-apbs-plugin/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/pymol-plugins-psico/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | jlec@gentoo.org 7 | 8 | 9 | -------------------------------------------------------------------------------- /sci-chemistry/pyquante/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/rosetta-tools/Manifest: -------------------------------------------------------------------------------- 1 | DIST BioTools-3.0.tgz 41121 SHA256 363689571fd131ba0e9b4fdbe239868c3a78b7104270f5b2d0285b0f96af4f9c 2 | -------------------------------------------------------------------------------- /sci-chemistry/rosetta-tools/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/shiftx/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/simpson/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/smmp/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/specView/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/ssp/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | jlec@gentoo.org 7 | 8 | 9 | -------------------------------------------------------------------------------- /sci-chemistry/talosn/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/trajng/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | alexxy@gentoo.org 7 | Alexey Shvetsov 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-chemistry/ucsf-tools/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/unio/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/usf-tools/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-chemistry/votca-csgapps/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | ottxor@gentoo.org 7 | Christoph Junghans 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-chemistry/xdrfile/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | alexxy@gentoo.org 7 | Alexey Shvetsov 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-electronics/player/Manifest: -------------------------------------------------------------------------------- 1 | DIST player-2.0.4.tar.bz2 1707996 SHA256 615225f22e0585df2a5fdf9adaddbe6e2a9ca25f1015607f51a47023fcc2cdf9 2 | -------------------------------------------------------------------------------- /sci-electronics/stage/Manifest: -------------------------------------------------------------------------------- 1 | DIST stage-2.0.3.tar.bz2 451664 SHA256 7a9619f5ef633d18a11900da1e59e807547180fce4420bb9e9b4c681ddbe6c83 2 | -------------------------------------------------------------------------------- /sci-electronics/stage/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-electronics 5 | 6 | -------------------------------------------------------------------------------- /sci-electronics/tnt/Manifest: -------------------------------------------------------------------------------- 1 | DIST tnt-1.2.2.tar.gz 2020099 SHA256 cbb418d0de4f244d8174e8826e4d8272bce753f50431c9d87af08928f5817445 2 | -------------------------------------------------------------------------------- /sci-electronics/tnt/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-electronics 5 | 6 | -------------------------------------------------------------------------------- /sci-geosciences/cdat-lite/Manifest: -------------------------------------------------------------------------------- 1 | DIST cdat_lite-5.2.tar.gz 3454154 SHA256 72e851d61d9f8be5d744b346ccbb16a757809f723e332ed09703bfaeb8c84bd7 2 | DIST cdat_lite-6.0rc2.tar.gz 3563402 SHA256 6cbfdf9b47fdbc189ca7d2819dafb6cf958116e0f6077b325c375a0ddfab2a95 3 | -------------------------------------------------------------------------------- /sci-geosciences/congen/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-geosciences/congen 2 | # Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | 23 Aug 2008; Tim Cera +congen-1.6.ebuild, 6 | +metadata.xml: 7 | Initial ebuild. 8 | 9 | -------------------------------------------------------------------------------- /sci-geosciences/congen/Manifest: -------------------------------------------------------------------------------- 1 | DIST congen-1.6.tar.bz2 243967 SHA256 162f7563fdf13a307745eaa4261df5bd46f74bbc29cfdadefbe8af1f6bb641b3 2 | -------------------------------------------------------------------------------- /sci-geosciences/congen/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-geosciences 5 | 6 | -------------------------------------------------------------------------------- /sci-geosciences/harmonics-dwf-free-noncomm/Manifest: -------------------------------------------------------------------------------- 1 | DIST harmonics-dwf-20110410-nonfree.tar.bz2 308042 SHA256 31b58f73cf5e15496e4279e5a8ba480c2cc1190bc29524a21a634efde9839952 2 | -------------------------------------------------------------------------------- /sci-geosciences/qgis/Manifest: -------------------------------------------------------------------------------- 1 | DIST qgis_sample_data.tar.gz 13601736 SHA256 a31c54056776e8476e1f959870830f850423645cfb80d88811f3b365c29f2b4a 2 | -------------------------------------------------------------------------------- /sci-geosciences/seawater/Manifest: -------------------------------------------------------------------------------- 1 | DIST seawater-2.0.1.tar.gz 2680741 SHA256 e343ef9dba9cc5806b4040af5a63132e2d04bab6406216d5041f81f76d4b25cf 2 | -------------------------------------------------------------------------------- /sci-geosciences/swmm/Manifest: -------------------------------------------------------------------------------- 1 | DIST swmm50022_engine.zip 338011 SHA256 4dba36cbe5e39524c06b826e265ae8fdd2afb82b1c63bb5d9fd72214ed2d7409 2 | -------------------------------------------------------------------------------- /sci-geosciences/tappy/Manifest: -------------------------------------------------------------------------------- 1 | DIST tappy-0.9.0.tar.gz 1250867 SHA256 273dce2595a0c2161752d9cb26e4e2569d6f42028cdf0b418c90775ff2443bf0 2 | -------------------------------------------------------------------------------- /sci-geosciences/tcd-utils/Manifest: -------------------------------------------------------------------------------- 1 | DIST tcd-utils-20061127.tar.bz2 111453 SHA256 3ebe4a4c7c5d59523fb3e9f8b392b8b68400a9d6ab4bb3d0ba8981a3fa1fb867 2 | DIST tcd-utils-20080820.tar.bz2 111300 SHA256 61912e793ab58cd396c77721743f648f40b3806a05dbb1229b015fada0643260 3 | -------------------------------------------------------------------------------- /sci-libs/Cgraph/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /sci-libs/bigdft-abi/files/bigdft-abi-1.0.4-tests.tar.bz2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jhcloos/sci/1a21cdf6cdb90c46faf9beefcbe2809710b056af/sci-libs/bigdft-abi/files/bigdft-abi-1.0.4-tests.tar.bz2 -------------------------------------------------------------------------------- /sci-libs/bigdft/files/bigdft-1.7-dev.12-tests.tar.bz2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jhcloos/sci/1a21cdf6cdb90c46faf9beefcbe2809710b056af/sci-libs/bigdft/files/bigdft-1.7-dev.12-tests.tar.bz2 -------------------------------------------------------------------------------- /sci-libs/blas-reference/blas-reference-20120925.ebuild: -------------------------------------------------------------------------------- 1 | blas-reference-99999999.ebuild -------------------------------------------------------------------------------- /sci-libs/blastdb/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-libs/blastdb 2 | # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | 13 Jun 2013; Justin Lecher blastdb-9999.ebuild, 6 | metadata.xml: 7 | Add missing build dep; fix license 8 | 9 | -------------------------------------------------------------------------------- /sci-libs/blastdb/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /sci-libs/bliss/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | ottxor@gentoo.org 7 | Christoph Junghans 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-libs/calculix-ccx/Manifest: -------------------------------------------------------------------------------- 1 | DIST ccx_2.2.ps.tar.bz2 1828966 SHA256 13b3341bf059732059396061ce006a28c1296f085adba6624972e4899eca25fa 2 | DIST ccx_2.2.src.tar.bz2 719861 SHA256 88672b95b8241041cc12e90f8d7e3ad9cb05b11dbb07ae4f0230355f31dece0e 3 | DIST ccx_2.2.test.tar.bz2 8101987 SHA256 1a95a08e6abbccdb72964d01466151513651a8bd66f7f1c29db7d3ace3827696 4 | -------------------------------------------------------------------------------- /sci-libs/calculix-ccx/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | Add sparse eigen value support via sci-libs/arpack 7 | 8 | 9 | -------------------------------------------------------------------------------- /sci-libs/calculix-cgx/Manifest: -------------------------------------------------------------------------------- 1 | DIST cgx_2.2.all.tar.bz2 1357357 SHA256 216a1102ac3d7765d10f1f4c78db11e974e50615d6cf08b4019000b6119a019a 2 | DIST cgx_2.2.ps.bz2 356718 SHA256 29ca4ac8bf613782eacc268084a0b2db5c6b4fdf14e345280d55a20d8754213b 3 | -------------------------------------------------------------------------------- /sci-libs/calculix-cgx/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /sci-libs/ccif/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | jlec@gentoo.org 7 | 8 | 9 | -------------------------------------------------------------------------------- /sci-libs/cgnsfoam/Manifest: -------------------------------------------------------------------------------- 1 | DIST cgnsfoam_1732.orig.tar.gz 48420 SHA256 46a105bef7c068642f7eda66605b48f8d593b87f05369f3e397634a3c493fbae 2 | -------------------------------------------------------------------------------- /sci-libs/cgnsfoam/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /sci-libs/cgnslib/Manifest: -------------------------------------------------------------------------------- 1 | DIST cgnslib_2.5-4.tar.gz 398419 SHA256 0485b32649f1e15de2e85a17f0cb2b5fe4d2522415eafe1f6c8cfa4820719964 2 | -------------------------------------------------------------------------------- /sci-libs/cgnslib/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /sci-libs/cgnstools/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /sci-libs/chemkit/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-libs/chemkit 2 | # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | *chemkit-0.1 (22 Jul 2013) 6 | 7 | 22 Jul 2013; Justin Lecher +chemkit-0.1.ebuild, 8 | +metadata.xml: 9 | New addition written by me 10 | 11 | -------------------------------------------------------------------------------- /sci-libs/cnsface-scripts/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-libs/cnsface-scripts 2 | # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | *cnsface-scripts-0.1 (01 Dec 2010) 6 | 7 | 01 Dec 2010; Justin Lecher +cnsface-scripts-0.1.ebuild, 8 | +metadata.xml: 9 | New addition 10 | 11 | -------------------------------------------------------------------------------- /sci-libs/cnsface-scripts/Manifest: -------------------------------------------------------------------------------- 1 | DIST cnsface-scripts-0.1-mercury.tar.gz 154932 SHA256 93dd6fa62a37b513c37d2bcf6d6246565bc75297c9ac8807a9d77020e2283413 2 | -------------------------------------------------------------------------------- /sci-libs/cnsface-scripts/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /sci-libs/coinor-dip/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-libs/coinor-dip 2 | # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | *coinor-dip-0.83.2 (20 Jul 2012) 6 | 7 | 20 Jul 2012; Sébastien Fabbro +coinor-dip-0.83.2.ebuild, 8 | +metadata.xml: 9 | sci-libs/coinor-dip: Initial import 10 | -------------------------------------------------------------------------------- /sci-libs/coinor-os/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-libs/coinor-os 2 | # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | *coinor-os-2.6.0 (19 Jul 2012) 6 | 7 | 19 Jul 2012; Sébastien Fabbro +coinor-os-2.6.0.ebuild, 8 | +metadata.xml: 9 | sci-libs/coinor-os: Initial import 10 | -------------------------------------------------------------------------------- /sci-libs/cs-rosetta-db/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /sci-libs/dcmtk/Manifest: -------------------------------------------------------------------------------- 1 | DIST dcmtk-3.5.4.tar.gz 3756374 SHA256 7b8575ba609516d76b681c0de8c1328cf23e57deb2c7085a6aa37d4292354d76 2 | DIST dcmtk-3.5.5_20101008.tar.gz 4662578 SHA256 f8eb25c76e078a387f86cd09ee27687f9860a1e9072b321ac8e070ccb85b1d90 3 | DIST dcmtk_3.5.4-3.diff.gz 140253 SHA256 8dd3ca447de4b0f1d553f672f36d5d88af86763604e2fc830667ce6fdd12677a 4 | -------------------------------------------------------------------------------- /sci-libs/dealii/dealii-8.0.0.ebuild: -------------------------------------------------------------------------------- 1 | dealii-9999.ebuild -------------------------------------------------------------------------------- /sci-libs/driftwood/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-libs/driftwood 2 | # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | *driftwood-0.87 (30 Aug 2009) 6 | 7 | 30 Aug 2009; Justin Lecher (jlec) 8 | +driftwood-0.87.ebuild, +metadata.xml: 9 | Written by me 10 | 11 | -------------------------------------------------------------------------------- /sci-libs/driftwood/Manifest: -------------------------------------------------------------------------------- 1 | DIST driftwood-0.87-src.tar.bz2 859378 SHA256 46a9da0c01e98bd29760ad4cd0a625842bb2c1ee609ad2d156915fe38e5cd62f 2 | -------------------------------------------------------------------------------- /sci-libs/driftwood/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-libs/etsf_io/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /sci-libs/factory/Manifest: -------------------------------------------------------------------------------- 1 | DIST factory-3-1-1.tar.gz 540431 SHA256 1f86833248ef2bb5fd7820201d08df864bda2d8be58bc69255ecdca6fdf12c1b 2 | -------------------------------------------------------------------------------- /sci-libs/fgsl/Manifest: -------------------------------------------------------------------------------- 1 | DIST fgsl-0.9.3.tar.gz 293761 SHA256 ba6c7d95ea73ea81435b6960fa9dc1e6e11d2da7fa145117111352d873c71ce9 2 | DIST fgsl-0.9.4.tar.gz 999825 SHA256 f589283f5b9df5df9ef39b108114df2ed740109fabb8956fe98eaaac20924ba7 3 | -------------------------------------------------------------------------------- /sci-libs/framewave/Manifest: -------------------------------------------------------------------------------- 1 | DIST FRAMEWAVE_1.3.1_SRC.tar.gz 5405064 SHA256 92f2f1df3be12526089db7fe35ca8ed97a1cb4feb198162f30620b72e5f44425 2 | -------------------------------------------------------------------------------- /sci-libs/geom/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-libs/geom 2 | # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | *geom-5.1.2.7 (09 Mar 2011) 6 | 7 | 09 Mar 2011; Oliver Borm (boroli) +geom-5.1.2.7.ebuild, 8 | +metadata.xml: 9 | sci-libs/geom: New ebuild from bug 358061 10 | 11 | -------------------------------------------------------------------------------- /sci-libs/geom/Manifest: -------------------------------------------------------------------------------- 1 | DIST geom-5.1.2.7.tar.gz 612914 SHA256 c0685d82535db3899d9321d72237b5d1be2dbafd1c85f990f767d5cd88571055 2 | -------------------------------------------------------------------------------- /sci-libs/geom/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | 7 | 8 | -------------------------------------------------------------------------------- /sci-libs/ghmm/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-libs/ghmm 2 | # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | 25 Jun 2011; Justin Lecher metadata.xml: 6 | Fixed herd entry in metadata.xml 7 | 8 | -------------------------------------------------------------------------------- /sci-libs/ghmm/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | weaver@gentoo.org 6 | Andrey Kislyuk 7 | 8 | sci 9 | 10 | -------------------------------------------------------------------------------- /sci-libs/givaro/Manifest: -------------------------------------------------------------------------------- 1 | DIST givaro-3.2.13.tar.gz 601026 SHA256 cef5972a79038c7fdbbcc80c90917ed0b339614723e9cd12436b55358ef34eb0 2 | DIST givaro-3.3.tar.gz 643288 SHA256 90677ee9af4a33f827dfce48359c2c419302dfb46227fb8cc16de23f18ac757e 3 | -------------------------------------------------------------------------------- /sci-libs/gmsh/files/gmsh-2.5.0-libpng-1.5.patch: -------------------------------------------------------------------------------- 1 | --- a/Graphics/gl2png.cpp 2 | +++ b/Graphics/gl2png.cpp 3 | @@ -16,6 +16,7 @@ 4 | #else 5 | 6 | #include 7 | +#include 8 | 9 | #ifndef png_jmpbuf 10 | # define png_jmpbuf(png_ptr) ((png_ptr)->jmpbuf) 11 | 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-------------------------------------------------------------------------------- 1 | DIST libcgnsoo-3.0_1728.orig.tar.gz 363425 SHA256 88cb09e2280a19b39ff44a4a5ffb0f1082158e46b4247e12c245a7ca570b37d3 2 | -------------------------------------------------------------------------------- /sci-libs/libcgnsoo/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /sci-libs/libfac/Manifest: -------------------------------------------------------------------------------- 1 | DIST libfac-3-1-0.tar.gz 91544 SHA256 fc3dda08f7ec039635f8d7f1629546f4ac7620a69cf9332ca39e29dd822aee7d 2 | DIST libfac-3-1-1.tar.gz 90104 SHA256 4c463af2d22375aa62be4fb1f9a32cada6723ca5e3ddbd8a4f5cab72b675e33a 3 | -------------------------------------------------------------------------------- /sci-libs/libspatialindex/Manifest: 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SHA256 8463aaae43ec5caef6087a819d78cc7e0dc6a24ac049849142c0290b238ab68d 3 | -------------------------------------------------------------------------------- /sci-libs/matio/Manifest: -------------------------------------------------------------------------------- 1 | DIST matio-1.3.4.tar.gz 450343 SHA256 7261880b18a661e5d206b4e479d4334b47549f093130df42f7204fd05dfe0bc5 2 | -------------------------------------------------------------------------------- /sci-libs/med/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /sci-libs/mesquite/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-libs/mesquite 2 | # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | *mesquite-2.1.2 (29 Nov 2010) 6 | 7 | 29 Nov 2010; Oliver Borm (boroli) 8 | +mesquite-2.1.2.ebuild: 9 | sci-libs/mesquite: Initial file upload 10 | 11 | -------------------------------------------------------------------------------- /sci-libs/mesquite/Manifest: -------------------------------------------------------------------------------- 1 | DIST mesquite-2.1.2.tar.gz 7209426 SHA256 a1410104737c27e6f59b131b5c93a462016c5f2e51cf4381dd940638fe1a968f 2 | -------------------------------------------------------------------------------- /sci-libs/mesquite/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /sci-libs/modglue/Manifest: -------------------------------------------------------------------------------- 1 | DIST modglue-1.16.tar.gz 89987 SHA256 1da62910d7171cb5547c0757c366e5338f889c0155c33375e891df75e2ee429e 2 | -------------------------------------------------------------------------------- /sci-libs/msms/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | -------------------------------------------------------------------------------- /sci-libs/ni-visa/Manifest: -------------------------------------------------------------------------------- 1 | DIST NI-VISA-0.0.1.iso 1 SHA256 01ba4719c80b6fe911b091a7c05124b64eeece964e09c058ef8f9805daca546b 2 | -------------------------------------------------------------------------------- /sci-libs/ni-visa/files/70nivisa: -------------------------------------------------------------------------------- 1 | SEARCH_DIRS_MASK="/usr/local/lib/LabVIEW-8.0 /usr/local/lib/LabVIEW-8.2" 2 | -------------------------------------------------------------------------------- /sci-libs/ni-visa/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | mail@akhuettel.de 6 | 7 | 8 | -------------------------------------------------------------------------------- /sci-libs/oasa/Manifest: -------------------------------------------------------------------------------- 1 | DIST oasa-0.13.1.tar.gz 165293 SHA256 196689513514fb45a062882454c85722ff2edab54901458c2ddfc962580c3431 2 | -------------------------------------------------------------------------------- /sci-libs/omalloc/Manifest: -------------------------------------------------------------------------------- 1 | DIST Singular-3-1-1-2.tar.gz 19397418 SHA256 4e5929b324f952c69de1dedddbeca1c51a3733a0f63e026d3e7b61a7e469d5a7 2 | -------------------------------------------------------------------------------- /sci-libs/pg2plplot/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-libs/pg2plplot 2 | # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | *pg2plplot-0.2.0 (13 Jan 2013) 6 | 7 | 13 Jan 2013; AstroFloyd +pg2plplot-0.2.0.ebuild, 8 | +metadata.xml: 9 | Created initial ebuild for PG2PLplot-0.2.0 10 | 11 | -------------------------------------------------------------------------------- /sci-libs/pg2plplot/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | AstroFloyd@gmail.com 7 | AstroFloyd 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-libs/scikits_image/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-libs/scikits_image 2 | # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | 19 Aug 2013; Sébastien Fabbro scikits_image-9999.ebuild: 6 | sci-libs/scikits_image: Revert to esetup.py instead of for testing, remove 7 | scikits depedency 8 | -------------------------------------------------------------------------------- /sci-libs/starparse/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /sci-libs/symmetrica/Manifest: -------------------------------------------------------------------------------- 1 | DIST SYM2_0.tar.gz 720154 SHA256 bf52788dedc14c482e89f5e7efe8c60864a633314ddd446dd4602d5fdaca0ee2 2 | -------------------------------------------------------------------------------- /sci-libs/tmglib/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | This is a library to generate matrices to test LAPACK 7 | implementations. 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-libs/votca-tools/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-chemistry 5 | 6 | ottxor@gentoo.org 7 | Christoph Junghans 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-libs/wannier90/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /sci-libs/zarja/Manifest: -------------------------------------------------------------------------------- 1 | DIST zarja-1.1.1.tar.gz 1368076 SHA256 279198e15dca274ba4cdef2cb2e997e74e32bf5a92cc9b6d0d08f264131b8f38 2 | -------------------------------------------------------------------------------- /sci-mathematics/Oid/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-mathematics/Oid 2 | # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | *Oid-4.0 (02 Sep 2010) 6 | 7 | 02 Sep 2010; Thomas Kahle +Oid-4.0.ebuild, +metadata.xml: 8 | Initial Import, ebuild due to Johannes Rauh 9 | 10 | -------------------------------------------------------------------------------- /sci-mathematics/Oid/Manifest: -------------------------------------------------------------------------------- 1 | DIST Oid4-0.tar.gz 244760 SHA256 225c2089bfb99e386af8344c5a3fd606c19fce9a8132df5a65c6b3de956e00bf 2 | DIST OidUserManual4-0.pdf 191264 SHA256 87f96d61c42b0f430da1295b159ac0079aa05fea45fca44bdf9a3efb504239b0 3 | -------------------------------------------------------------------------------- /sci-mathematics/acl2/Manifest: -------------------------------------------------------------------------------- 1 | DIST acl2.tar.gz 11699557 SHA256 0f727b44257640346dc6eecc046f339b171676e79c31883535281e61bbfca077 2 | -------------------------------------------------------------------------------- /sci-mathematics/apron/Manifest: -------------------------------------------------------------------------------- 1 | DIST apron-0.9.10.tgz 1694989 SHA256 b108de2f4a8c4ecac1ff76a6d282946fd3bf1466a126cf5344723955f305ec8e 2 | -------------------------------------------------------------------------------- /sci-mathematics/aribas/Manifest: -------------------------------------------------------------------------------- 1 | DIST aribas-1.63.tar.gz 291939 SHA256 60d5367057780ded5bab012a5d55f192c3f98f315e1c8475092791ce216c9543 2 | -------------------------------------------------------------------------------- /sci-mathematics/aribas/files/64aribas-gentoo.el: -------------------------------------------------------------------------------- 1 | ;; aribas mode 2 | (add-to-list 'load-path "@SITELISP@") 3 | (autoload 'run-aribas "aribas" "Run ARIBAS." t) 4 | -------------------------------------------------------------------------------- /sci-mathematics/axiom/Manifest: -------------------------------------------------------------------------------- 1 | DIST axiom-sept2010-src.tgz 119714986 SHA256 b750350f065ad5db3edda228908728b83bf5fec100052a83eeebc628bc3ef4bf 2 | -------------------------------------------------------------------------------- /sci-mathematics/axiom/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-mathematics 5 | 6 | -------------------------------------------------------------------------------- /sci-mathematics/burrtools/Manifest: -------------------------------------------------------------------------------- 1 | DIST burrtools-0.5.2-A4.pdf 1268505 SHA256 7ef48e7fcbd8e426e8fab1205def32e108c822b31949440d9bf04e3587e0164e 2 | DIST burrtools-0.5.2.tar.gz 1920561 SHA256 400d549ebcb9d190c19d72582268a45cb7c54d2247f3531d212ddb1d7a83c8c7 3 | -------------------------------------------------------------------------------- /sci-mathematics/dolfin/Manifest: -------------------------------------------------------------------------------- 1 | DIST dolfin-0.9.9.tar.gz 10229504 SHA256 41c1760dbe40fc2b6cd623a181c4e168881598defe0874ac7686a413ea7b73f4 2 | -------------------------------------------------------------------------------- /sci-mathematics/freefem++/Manifest: -------------------------------------------------------------------------------- 1 | DIST freefem++-3.8.tar.gz 21848854 SHA256 4ea6d754eb3914f20b1fe7620d562e95461b7206f289108e2fc803baecf70e6c 2 | -------------------------------------------------------------------------------- /sci-mathematics/gambit/Manifest: -------------------------------------------------------------------------------- 1 | DIST gambit-0.2010.09.01.tar.gz 1400267 SHA256 a224851e56302d345a3c6e9dfa5366d2edcd24b694ef532f0ad253bc9e5290e2 2 | -------------------------------------------------------------------------------- /sci-mathematics/gap-guava/Manifest: -------------------------------------------------------------------------------- 1 | DIST guava3.10.tar.bz2 2384499 SHA256 1ce828d6697acaf0b7dde56e20037b992ae750c08cb3b9f3b8c0c26c9e914f51 2 | -------------------------------------------------------------------------------- /sci-mathematics/gap-guava/files/gap-guava-3.10-fix-missing-header.patch: -------------------------------------------------------------------------------- 1 | --- src/leonconv.c.orig 2008-08-19 10:50:52.000000000 +0000 2 | +++ src/leonconv.c 2010-06-26 07:52:35.166539820 +0000 3 | @@ -1,3 +1,4 @@ 4 | +#include 5 | #include 6 | #if !defined(__APPLE__) 7 | #include 8 | -------------------------------------------------------------------------------- /sci-mathematics/gap-guava/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-mathematics 5 | 6 | -------------------------------------------------------------------------------- /sci-mathematics/gap/Manifest: -------------------------------------------------------------------------------- 1 | DIST gap4r4p12.tar.bz2 47715810 SHA256 5ff56c5eb89b1fd0da9f216dbe1dce8fe44674858b6ad06cb277d36b7960be4d 2 | DIST xtom1r1p4.tar.bz2 11480845 SHA256 5591dfa222d2fb6c4596c3e5c5347db339e08f209798e4a332a0d902035d4f66 3 | -------------------------------------------------------------------------------- /sci-mathematics/htk/Manifest: -------------------------------------------------------------------------------- 1 | DIST HDecode-3.4.1.tar.gz 101930 SHA256 9517b25a91200e3e84ebed0d615f73715196dbfaf32ef854c2e964442175bee5 2 | DIST HTK-3.4.1.tar.gz 2101024 SHA256 42297b036ce3a47adeab26aaa42f51ac4b370ead7f53bab75fd27a52d38ae5ac 3 | -------------------------------------------------------------------------------- /sci-mathematics/kash-bin/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-mathematics/kash-bin 2 | # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | *kash-bin-3 (02 Feb 2012) 6 | 7 | 02 Feb 2012; Thomas Kahle +kash-bin-3.ebuild, 8 | +metadata.xml: 9 | Initial ebuild 10 | 11 | -------------------------------------------------------------------------------- /sci-mathematics/kayali/Manifest: -------------------------------------------------------------------------------- 1 | DIST kayali-0.3.2.tar.gz 568917 SHA256 797a64086bc8d6a9d8e0a8a36c6ab8391d2e3908a2667899ebb11ffd2cb7b134 2 | -------------------------------------------------------------------------------- /sci-mathematics/lattE-macchiato/Manifest: -------------------------------------------------------------------------------- 1 | DIST latte-for-tea-too-1.2-mk-0.9.3.tar.gz 12782533 SHA256 3096587528f6012ee4545d51610a989f03447dc103734352cacd37182a499f48 2 | -------------------------------------------------------------------------------- /sci-mathematics/libsfmt/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-mathematics/libsfmt 2 | # Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | 19 Jun 2008; Sébastien Fabbro 6 | +libsfmt-1.3.0.ebuild: 7 | Initial import, ebuild by Perttu Luukko, bug #227851 8 | 9 | -------------------------------------------------------------------------------- /sci-mathematics/libsfmt/Manifest: -------------------------------------------------------------------------------- 1 | DIST libsfmt-1.3.0.tar.bz2 369333 SHA256 7e0b336b7096736fd7fbdcf08f2202bfb04bba271a482e5739dc41a26990fd9a 2 | -------------------------------------------------------------------------------- /sci-mathematics/libsfmt/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-mathematics 5 | 6 | -------------------------------------------------------------------------------- /sci-mathematics/lie/Manifest: -------------------------------------------------------------------------------- 1 | DIST conLiE.tar.gz 361170 SHA256 6eac244471abb730811a05c8cb0b36eb7f8285cd18a03b956dadcf80ef1f0961 2 | -------------------------------------------------------------------------------- /sci-mathematics/ltl2ba/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-mathematics/ltl2ba 2 | # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | 04 Jul 2010; Andreas K. Huettel (dilfridge) 6 | ltl2ba-1.1.ebuild, +metadata.xml: 7 | Silence repoman 8 | 9 | -------------------------------------------------------------------------------- /sci-mathematics/ltl2ba/Manifest: -------------------------------------------------------------------------------- 1 | DIST ltl2ba-1.1.tar.gz 29629 SHA256 a66bf05bc3fd030f19fd0114623d263870d864793b1b0a2ccf6ab6a40e7be09b 2 | -------------------------------------------------------------------------------- /sci-mathematics/ltl2ba/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /sci-mathematics/netgen/Manifest: -------------------------------------------------------------------------------- 1 | DIST netgen-4.9.13.tar.gz 1829916 SHA256 a5f188bb0fafc0536389314efb8fe6d294b93512b54f2b67c9a3e5431c3b0412 2 | -------------------------------------------------------------------------------- /sci-mathematics/netgen/files/netgen.desktop: -------------------------------------------------------------------------------- 1 | [Desktop Entry] 2 | Encoding=UTF-8 3 | Name=Netgen 4 | Comment=3D modeling, Mesh generation. 5 | Exec=/usr/bin/netgen 6 | Icon=netgen 7 | Terminal=0 8 | Type=Application 9 | Categories=Graphics;Application; 10 | -------------------------------------------------------------------------------- /sci-mathematics/netgen/files/netgen.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jhcloos/sci/1a21cdf6cdb90c46faf9beefcbe2809710b056af/sci-mathematics/netgen/files/netgen.png -------------------------------------------------------------------------------- /sci-mathematics/netgen/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-mathematics 5 | 6 | Enable OpenCASCADE support 7 | 8 | 9 | -------------------------------------------------------------------------------- /sci-mathematics/open-axiom/Manifest: -------------------------------------------------------------------------------- 1 | DIST open-axiom-1.3.0.tar.bz2 11821857 SHA256 5c35d0c8b6da17ff2254d833c5f6694d3f5d49064e312e61719cdeb386f888c4 2 | -------------------------------------------------------------------------------- /sci-mathematics/pest/Manifest: -------------------------------------------------------------------------------- 1 | DIST addendum.pdf 2443201 SHA256 6ed2e518262875560584d6083fe0b51cacd653693b5c9af14c844215c1f43950 2 | DIST pest-12.2.tar.zip 1296848 SHA256 426eb71912b7e9e5f3f6ca23ae8d4969dd8fd7adb20ef3465446da0b1e50b597 3 | DIST pestman.pdf 2471434 SHA256 790779982ed00cca2a014b0983f71008ba2635f6bf21f7eda67aa0d05d417e83 4 | -------------------------------------------------------------------------------- /sci-mathematics/polymake/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sci-mathematics/polymake 2 | # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | 03 Mar 2013; Justin Lecher polymake-2.11-r1.ebuild, 6 | metadata.xml: 7 | Add missing multilib.eclass 8 | 9 | -------------------------------------------------------------------------------- /sci-mathematics/pulp/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /sci-mathematics/scilab/files/scilab-5.3.3-jgrapx-min.patch: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jhcloos/sci/1a21cdf6cdb90c46faf9beefcbe2809710b056af/sci-mathematics/scilab/files/scilab-5.3.3-jgrapx-min.patch -------------------------------------------------------------------------------- /sci-mathematics/surfer/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-mathematics 5 | 6 | -------------------------------------------------------------------------------- /sci-mathematics/ufc/Manifest: -------------------------------------------------------------------------------- 1 | DIST ufc-1.4.2.tar.gz 560547 SHA256 7f67e67c1e51753cbc0755db4122e2ece585af53a7869ddb670ee6aae7f2ff91 2 | -------------------------------------------------------------------------------- /sci-mathematics/why/Manifest: -------------------------------------------------------------------------------- 1 | DIST why-2.30.tar.gz 3530934 SHA256 88e78f6ec684e5a2a89d4525159b6a622936614a3bd0fc1ad358e8b387a50d64 2 | -------------------------------------------------------------------------------- /sci-mathematics/yorick/Manifest: -------------------------------------------------------------------------------- 1 | DIST yorick-2.1.06.tgz 2275314 SHA256 8387d01201641fc1350d8be10e73cabb984c7909a8a9c20fea993bcf0e5be749 2 | -------------------------------------------------------------------------------- /sci-misc/finomaton/Manifest: -------------------------------------------------------------------------------- 1 | DIST finomaton-1.0.tar.gz 69681 SHA256 a4aed3796e4803f569a7e638faa5a143811af88b4e7ab4ac92d26b90d357d390 2 | -------------------------------------------------------------------------------- /sci-misc/finomaton/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | flammie@gentoo.org 6 | 7 | 8 | -------------------------------------------------------------------------------- /sci-misc/fitscut/Manifest: -------------------------------------------------------------------------------- 1 | DIST fitscut-1.4.4.tar.gz 163663 SHA256 1df936af9cd36bf1cd1e3a095ecc8bec68a6974525e0f4fd0e9cccb9633728bb 2 | -------------------------------------------------------------------------------- /sci-misc/foma/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | flammie@gentoo.org 6 | 7 | 8 | -------------------------------------------------------------------------------- /sci-misc/jwnl/Manifest: -------------------------------------------------------------------------------- 1 | DIST jwnl13rc3.zip 640112 SHA256 6c0cbfa0dfc19e5d773255c684398cf38970312ae955a99a128c826830a785ad 2 | DIST jwnl13rc3_src.zip 109993 SHA256 d00d1102ab6c9731c48570583d6f7d21faba50a670e1d44d17fb994fd2a9e912 3 | -------------------------------------------------------------------------------- /sci-misc/kotus-sanalista/Manifest: -------------------------------------------------------------------------------- 1 | DIST kotus-sanalista-v1-r1.tar.bz2 461303 SHA256 bb03e3e858c6777867cf2379d4215dc221d22711ec54b54b21b9e9bb84d48d4a 2 | -------------------------------------------------------------------------------- /sci-misc/nltk/Manifest: -------------------------------------------------------------------------------- 1 | DIST nltk-2.0.1rc1.zip 1095096 SHA256 ab26d1a93b783c26bd234ecaeef250b8a5f35b601810d0b78e24c52e749627e7 2 | -------------------------------------------------------------------------------- /sci-misc/omorfi/Manifest: -------------------------------------------------------------------------------- 1 | DIST omorfi-0.1-alpha.tar.bz2 110111 SHA256 6f4149f980fcb5075f8fb40bee107b7b5359070fa0694c73e2f7a96951966c5e 2 | -------------------------------------------------------------------------------- /sci-misc/openfst/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | flammie@gentoo.org 6 | 7 | 8 | -------------------------------------------------------------------------------- /sci-misc/opennlp-maxent/Manifest: -------------------------------------------------------------------------------- 1 | DIST maxent-2.4.0.tgz 1242290 SHA256 9956e9bd0ed0fe4a82dd26190876c23897fab25c8035c7e0b23f7239acff4db1 2 | -------------------------------------------------------------------------------- /sci-misc/praat/Manifest: -------------------------------------------------------------------------------- 1 | DIST praat5100_sources.tar.gz 5389639 SHA256 0483badf3a0fd78134595cc868c14c77402bc432b184406557399467a50ba543 2 | DIST praat5115_sources.tar.gz 5643423 SHA256 680491b18e6f1c083bc74f7544dfa95d9c86d81af2f298331683074cc8cd1d65 3 | -------------------------------------------------------------------------------- /sci-misc/pywordnet/Manifest: -------------------------------------------------------------------------------- 1 | DIST pywordnet-2.0.1.tar.gz 38052 SHA256 02fa970e65f4807810d1f81dbec0bd3fbc63cdd68c716e4ddea938c9323893a2 2 | -------------------------------------------------------------------------------- /sci-misc/salome-component/Manifest: -------------------------------------------------------------------------------- 1 | DIST src5.1.3.tar.gz 106470135 SHA256 78ce2acc9cfa474e030723674f4420c420fd2de926b1939455c3716f1fd48a2b 2 | DIST src5.1.4.tar.gz 120063320 SHA256 dd59384ad4fbbbe49c72e946eed9e0f6144a01c799efab62033113a3db46eeae 3 | -------------------------------------------------------------------------------- /sci-misc/salome-component/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /sci-misc/salome-geom/Manifest: -------------------------------------------------------------------------------- 1 | DIST src5.1.3.tar.gz 106470135 SHA256 78ce2acc9cfa474e030723674f4420c420fd2de926b1939455c3716f1fd48a2b 2 | DIST src5.1.4.tar.gz 120063320 SHA256 dd59384ad4fbbbe49c72e946eed9e0f6144a01c799efab62033113a3db46eeae 3 | -------------------------------------------------------------------------------- /sci-misc/salome-geom/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /sci-misc/salome-gui/Manifest: -------------------------------------------------------------------------------- 1 | DIST src5.1.3.tar.gz 106470135 SHA256 78ce2acc9cfa474e030723674f4420c420fd2de926b1939455c3716f1fd48a2b 2 | DIST src5.1.4.tar.gz 120063320 SHA256 dd59384ad4fbbbe49c72e946eed9e0f6144a01c799efab62033113a3db46eeae 3 | -------------------------------------------------------------------------------- /sci-misc/salome-gui/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /sci-misc/salome-kernel/Manifest: -------------------------------------------------------------------------------- 1 | DIST src5.1.3.tar.gz 106470135 SHA256 78ce2acc9cfa474e030723674f4420c420fd2de926b1939455c3716f1fd48a2b 2 | DIST src5.1.4.tar.gz 120063320 SHA256 dd59384ad4fbbbe49c72e946eed9e0f6144a01c799efab62033113a3db46eeae 3 | -------------------------------------------------------------------------------- /sci-misc/salome-kernel/files/salome-kernel.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jhcloos/sci/1a21cdf6cdb90c46faf9beefcbe2809710b056af/sci-misc/salome-kernel/files/salome-kernel.png -------------------------------------------------------------------------------- /sci-misc/salome-kernel/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | Enable support for dev-python/numpy 7 | 8 | 9 | -------------------------------------------------------------------------------- /sci-misc/salome-med/Manifest: -------------------------------------------------------------------------------- 1 | DIST src5.1.3.tar.gz 106470135 SHA256 78ce2acc9cfa474e030723674f4420c420fd2de926b1939455c3716f1fd48a2b 2 | DIST src5.1.4.tar.gz 120063320 SHA256 dd59384ad4fbbbe49c72e946eed9e0f6144a01c799efab62033113a3db46eeae 3 | -------------------------------------------------------------------------------- /sci-misc/salome-med/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | Add support for metis 7 | Add support for scotch 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-misc/salome-meta/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /sci-misc/salome-pycalculator/Manifest: -------------------------------------------------------------------------------- 1 | DIST src5.1.3.tar.gz 106470135 SHA256 78ce2acc9cfa474e030723674f4420c420fd2de926b1939455c3716f1fd48a2b 2 | DIST src5.1.4.tar.gz 120063320 SHA256 dd59384ad4fbbbe49c72e946eed9e0f6144a01c799efab62033113a3db46eeae 3 | -------------------------------------------------------------------------------- /sci-misc/salome-pycalculator/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /sci-misc/salome-smesh/Manifest: -------------------------------------------------------------------------------- 1 | DIST src5.1.3.tar.gz 106470135 SHA256 78ce2acc9cfa474e030723674f4420c420fd2de926b1939455c3716f1fd48a2b 2 | DIST src5.1.4.tar.gz 120063320 SHA256 dd59384ad4fbbbe49c72e946eed9e0f6144a01c799efab62033113a3db46eeae 3 | -------------------------------------------------------------------------------- /sci-misc/salome-smesh/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /sci-misc/salome-visu/Manifest: -------------------------------------------------------------------------------- 1 | DIST src5.1.3.tar.gz 106470135 SHA256 78ce2acc9cfa474e030723674f4420c420fd2de926b1939455c3716f1fd48a2b 2 | DIST src5.1.4.tar.gz 120063320 SHA256 dd59384ad4fbbbe49c72e946eed9e0f6144a01c799efab62033113a3db46eeae 3 | -------------------------------------------------------------------------------- /sci-misc/salome-visu/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /sci-misc/salome-yacs/Manifest: -------------------------------------------------------------------------------- 1 | DIST src5.1.3.tar.gz 106470135 SHA256 78ce2acc9cfa474e030723674f4420c420fd2de926b1939455c3716f1fd48a2b 2 | DIST src5.1.4.tar.gz 120063320 SHA256 dd59384ad4fbbbe49c72e946eed9e0f6144a01c799efab62033113a3db46eeae 3 | -------------------------------------------------------------------------------- /sci-misc/salome-yacs/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /sci-misc/sfst/files/50sfst-gentoo.el: -------------------------------------------------------------------------------- 1 | 2 | ;;; site-lisp configuration for sfst-syntax 3 | 4 | (add-to-list 'load-path "@SITELISP@") 5 | 6 | (autoload 'sfst-mode "ebuild-mode" 7 | "Major mode for SFST-PL files" t) 8 | 9 | (add-to-list 'auto-mode-alist '("\\.fst\\'" . sfst-mode)) 10 | -------------------------------------------------------------------------------- /sci-misc/sfst/files/ftdetect-sfst.vim: -------------------------------------------------------------------------------- 1 | " SFST ftdetect for vim sfst-syntax 2 | au BufRead,BufNewFile *.sfst set filetype=sfst 3 | -------------------------------------------------------------------------------- /sci-misc/stanford-parser/Manifest: -------------------------------------------------------------------------------- 1 | DIST stanford-parser-2007-08-19.tar.gz 60783166 SHA256 e84d5db529c25c4833e1c30abf8fd66e576b7afa92ecbb570a0c709a39364081 2 | -------------------------------------------------------------------------------- /sci-misc/stanford-tagger/Manifest: -------------------------------------------------------------------------------- 1 | DIST postagger-2006-05-21.tar.gz 10722420 SHA256 944fa0f68d3b2d994817d535fd363483b0e3a1fa98cac5adb0b528c383105e8a 2 | -------------------------------------------------------------------------------- /sci-physics/abinit/files/6.12.3-gui-makefiles.tbz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jhcloos/sci/1a21cdf6cdb90c46faf9beefcbe2809710b056af/sci-physics/abinit/files/6.12.3-gui-makefiles.tbz -------------------------------------------------------------------------------- /sci-physics/atompaw/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-physics 5 | 6 | Use libxc for something 7 | 8 | 9 | -------------------------------------------------------------------------------- /sci-physics/atompaw2abinit/Manifest: -------------------------------------------------------------------------------- 1 | DIST atompaw2abinit-3.3.0.tgz 53820 SHA256 001b7b7c71985a7824d670b2e59969d8abd941dc93f4456cd41edffa75d25e82 2 | -------------------------------------------------------------------------------- /sci-physics/atompaw2abinit/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-physics 5 | 6 | -------------------------------------------------------------------------------- /sci-physics/openmx/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-physics 5 | 6 | -------------------------------------------------------------------------------- /sci-physics/qcl/files/qcl-0.6.3-gcc43.patch: -------------------------------------------------------------------------------- 1 | --- options.cc.orig 2010-05-26 18:06:46.000000000 +0100 2 | +++ options.cc 2010-05-26 18:14:33.000000000 +0100 3 | @@ -15,6 +15,7 @@ 4 | 5 | #include 6 | #include 7 | +#include 8 | 9 | #include "options.h" 10 | #include "error.h" 11 | -------------------------------------------------------------------------------- /sci-physics/qcl/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-physics 5 | 6 | A.G.Grozin@inp.nsk.su 7 | Andrey Grozin 8 | 9 | 10 | -------------------------------------------------------------------------------- /sci-physics/root/files/rootd.confd: -------------------------------------------------------------------------------- 1 | # conf.d file for root daemon 2 | 3 | # User to run as (default is `rootd') 4 | ROOTD_USER="rootd" 5 | 6 | # Please refer to the rootd(1) man(1) page for more information on 7 | # command line parameters. 8 | ROOTD_OPTS="" 9 | -------------------------------------------------------------------------------- /sci-visualization/labplot/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /sci-visualization/nodemon/Manifest: -------------------------------------------------------------------------------- 1 | DIST nodemon-0.3.5.tar.gz 697412 SHA256 c8c9eea2860a0a15910b8aed4aa0a58c5175b8750d03bd51eb0beff16e070f1f 2 | -------------------------------------------------------------------------------- /sci-visualization/vtkPOFFReader/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | 7 | 8 | -------------------------------------------------------------------------------- /sys-cluster/blcr/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | cluster 5 | 6 | Berkeley Lab Checkpoint/Restart for Linux 7 | 8 | 9 | -------------------------------------------------------------------------------- /sys-cluster/charmdebug/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /sys-cluster/empi/files/mpi.csh: -------------------------------------------------------------------------------- 1 | if ( -d "${HOME}"/.env.d && -f "${HOME}"/.env.d/mpi.csh ) then 2 | source "${HOME}"/.env.d/mpi.csh 3 | endif 4 | -------------------------------------------------------------------------------- /sys-cluster/empi/files/mpi.sh: -------------------------------------------------------------------------------- 1 | if [ -d "${HOME}"/.env.d -a -f "${HOME}"/.env.d/mpi.sh ]; then 2 | source "${HOME}"/.env.d/mpi.sh 3 | fi 4 | -------------------------------------------------------------------------------- /sys-cluster/empi/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | cluster 5 | 6 | jsbronder@gentoo.org 7 | 8 | 9 | -------------------------------------------------------------------------------- /sys-cluster/ganglia_jobmonarch/Manifest: -------------------------------------------------------------------------------- 1 | DIST ganglia_jobmonarch-0.3.1.tar.bz2 113717 SHA256 606911b14c367dd44ce2e180d88876b5fe6db006d4cec9d9ab9556c597e909c3 2 | -------------------------------------------------------------------------------- /sys-cluster/ganglia_jobmonarch/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | cluster 5 | 6 | -------------------------------------------------------------------------------- /sys-cluster/htcondor/files/condor.confd: -------------------------------------------------------------------------------- 1 | CONDOR_CENTRAL_MANAGER="$(cat /etc/condor/central_manager)" 2 | CONDOR_OPTS="" 3 | -------------------------------------------------------------------------------- /sys-cluster/modules/files/modules.sh.in: -------------------------------------------------------------------------------- 1 | shell=$(basename $(ps -p $$ -ocomm=)) 2 | if [ -f @EPREFIX@/usr/share/Modules/init/${shell} ] 3 | then 4 | . @EPREFIX@/usr/share/Modules/init/${shell} 5 | else 6 | . @PREFIX@/usr/share/Modules/init/sh 7 | fi 8 | -------------------------------------------------------------------------------- /sys-cluster/mpich/files/eselect.mpi.mpich: -------------------------------------------------------------------------------- 1 | MPI_CC=@ROOT@usr/bin/mpicc 2 | MPI_CXX=@ROOT@usr/bin/mpicxx 3 | MPI_F77=@ROOT@usr/bin/mpif77 4 | MPI_FC=@ROOT@usr/bin/mpif90 5 | CLASS_BASE_MPI_IMP=@BASE_IMP@ 6 | PATH=@ROOT@usr/bin 7 | MANPATH=@ROOT@usr/share/man 8 | LD_LIBRARY_PATH=@ROOT@usr/@LIBDIR@ 9 | -------------------------------------------------------------------------------- /sys-cluster/mpich2/files/eselect.mpi.mpich2: -------------------------------------------------------------------------------- 1 | MPI_CC=@ROOT@usr/bin/mpicc 2 | MPI_CXX=@ROOT@usr/bin/mpicxx 3 | MPI_F77=@ROOT@usr/bin/mpif77 4 | MPI_FC=@ROOT@usr/bin/mpif90 5 | CLASS_BASE_MPI_IMP=@BASE_IMP@ 6 | PATH=@ROOT@usr/bin 7 | MANPATH=@ROOT@usr/share/man 8 | LD_LIBRARY_PATH=@ROOT@usr/@LIBDIR@ 9 | -------------------------------------------------------------------------------- /sys-cluster/mpich2/files/mpd.conf: -------------------------------------------------------------------------------- 1 | secretword=test69hike 2 | MPD_SECRETWORD=test69hike 3 | -------------------------------------------------------------------------------- /sys-cluster/mvapich2/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sys-cluster/mvapich2 2 | # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | 03 Mar 2013; Justin Lecher mvapich2-1.6-r1.ebuild: 6 | Add missing flag-o-matic.eclass 7 | 8 | -------------------------------------------------------------------------------- /sys-cluster/mvapich2/Manifest: -------------------------------------------------------------------------------- 1 | DIST mvapich2-1.6.tgz 23239787 SHA256 e657ba2eaf43119fec70859677a08bb8138a8bf18c1f375891fed0b7c77aa28d 2 | -------------------------------------------------------------------------------- /sys-cluster/mvapich2/files/eselect.mpi.mvapich2: -------------------------------------------------------------------------------- 1 | MPI_CC=@ROOT@/usr/bin/mpicc 2 | MPI_CXX=@ROOT@/usr/bin/mpic++ 3 | MPI_F77=@ROOT@/usr/bin/mpif77 4 | MPI_F90=@ROOT@/usr/bin/mpif90 5 | MPI_BUILT_WITH=@BUILT_WITH@ 6 | PATH=@ROOT@/usr/bin 7 | MANPATH=@ROOT@/usr/share/man 8 | LD_LIBRARY_PATH=@ROOT@/usr/@LIBDIR@ 9 | -------------------------------------------------------------------------------- /sys-cluster/nullmpi/Manifest: -------------------------------------------------------------------------------- 1 | DIST nullmpi-0.7.tar.gz 148188 SHA256 88d6d09db717e22627fa7f225225f807d9315e611b903d2076ab0c83e74c8c96 2 | -------------------------------------------------------------------------------- /sys-cluster/nullmpi/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | cluster 5 | 6 | ottxor@gentoo.org 7 | Christoph Junghans 8 | 9 | 10 | -------------------------------------------------------------------------------- /sys-cluster/openmpi/files/eselect.mpi.openmpi: -------------------------------------------------------------------------------- 1 | MPI_CC=@ROOT@usr/bin/mpicc 2 | MPI_CXX=@ROOT@usr/bin/mpic++ 3 | MPI_F77=@ROOT@usr/bin/mpif77 4 | MPI_FC=@ROOT@usr/bin/mpif90 5 | CLASS_BASE_MPI_IMP=@BASE_IMP@ 6 | PATH=@ROOT@usr/bin 7 | MANPATH=@ROOT@usr/share/man 8 | LD_LIBRARY_PATH=@ROOT@usr/@LIBDIR@ 9 | -------------------------------------------------------------------------------- /sys-cluster/projections/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | 7 | 8 | -------------------------------------------------------------------------------- /sys-cluster/pyslice/Manifest: -------------------------------------------------------------------------------- 1 | DIST pyslice-1.6.4.tar.gz 37272 SHA256 72c5e759e1f12de0dfe663a3404c4dcf67aca2af4b6eb60de75e50f3372bfac3 2 | -------------------------------------------------------------------------------- /sys-cluster/pyslice/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | cluster 5 | 6 | Templating system for parametric modeling. 7 | 8 | 9 | -------------------------------------------------------------------------------- /sys-devel/gdebugger/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for sys-devel/gdebugger 2 | # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | 07 Jun 2012; Justin Lecher Manifest: 6 | Fix Manifest 7 | 8 | -------------------------------------------------------------------------------- /sys-devel/gdebugger/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | nbigaouette@gmail.com 7 | Nicolas Bigaouette 8 | 9 | 10 | -------------------------------------------------------------------------------- /sys-infiniband/librxe/Manifest: -------------------------------------------------------------------------------- 1 | DIST librxe-1.0.0.tar.gz 311559 SHA256 f9a1af980d6a2c91b857f85db70a784734e6e48eda5389676e38951013086388 2 | -------------------------------------------------------------------------------- /sys-infiniband/librxe/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | cluster 5 | 6 | -------------------------------------------------------------------------------- /virtual/blacs/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for virtual/blacs 2 | # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | *blacs-1.1 (09 Dec 2010) 6 | 7 | 09 Dec 2010; Sébastien Fabbro +blacs-1.1.ebuild, 8 | +metadata.xml: 9 | Initial import 10 | 11 | -------------------------------------------------------------------------------- /virtual/blacs/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | Gentoo virtual package for the Basic Linear Algebra Communication Subprograms implementation. 7 | 8 | 9 | -------------------------------------------------------------------------------- /virtual/cblas/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | Gentoo virtual package for the Basic Linear Algebra Subprograms 7 | C implementation. 8 | 9 | 10 | -------------------------------------------------------------------------------- /virtual/geant/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for virtual/geant 2 | # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | *geant-3 (18 Jan 2013) 6 | 7 | 18 Jan 2013; Sébastien Fabbro +geant-3.ebuild, 8 | +metadata.xml: 9 | virtual/geant: Initial import 10 | -------------------------------------------------------------------------------- /virtual/geant/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci-physics 5 | 6 | Gentoo virtual package for GEANT-3 implementation 7 | 8 | 9 | -------------------------------------------------------------------------------- /virtual/lapacke/ChangeLog: -------------------------------------------------------------------------------- 1 | # ChangeLog for virtual/lapacke 2 | # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 3 | # $Header: $ 4 | 5 | *lapacke-1.0 (09 Dec 2010) 6 | 7 | 09 Dec 2010; Sébastien Fabbro +lapacke-1.0.ebuild, 8 | +metadata.xml: 9 | Initial import 10 | 11 | -------------------------------------------------------------------------------- /virtual/lapacke/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | Gentoo virtual package for the Linear Algebra PACKAge 7 | C implementation. 8 | 9 | 10 | -------------------------------------------------------------------------------- /virtual/mpi/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | cluster 5 | 6 | Enable romio, a high-performance portable MPI-IO 7 | 8 | 9 | -------------------------------------------------------------------------------- /www-apps/py-swish-e/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /x11-libs/tr/Manifest: -------------------------------------------------------------------------------- 1 | DIST tr-1.3.tar.gz 23598 SHA256 75d2d66935264fe92bf13ed9538d1f167fec165fe28d26163c767ae418d7ae75 2 | -------------------------------------------------------------------------------- /x11-libs/tr/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | -------------------------------------------------------------------------------- /x11-libs/xview-bin/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | jlec@gentoo.org 7 | Justin Lecher 8 | 9 | 10 | -------------------------------------------------------------------------------- /x11-libs/xview/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | jlec@gentoo.org 7 | Justin Lecher 8 | 9 | 10 | -------------------------------------------------------------------------------- /x11-misc/envytools/metadata.xml: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci 5 | 6 | alexxy@gentoo.org 7 | Alexey Shvetsov 8 | 9 | 10 | --------------------------------------------------------------------------------