├── DESCRIPTION ├── NAMESPACE ├── NEWS ├── R ├── ARA.R ├── GIoperator.R ├── GRoperator.R ├── addArrowMark.R ├── addGuideLine.R ├── addInteractionAnnotation.R ├── allclasses.R ├── browseTracks.R ├── cooler.R ├── coverageGR.R ├── dandelion.plot.R ├── geneModelFromTxdb.R ├── geneTrack.R ├── getCurTrackViewport.R ├── getGeneIDsFromTxDb.R ├── getHeight.R ├── getLabelsMaxHeight.R ├── getLocation.R ├── gi2track.R ├── grid.dandelion.R ├── grid.lollipop.R ├── ideogramPlot.R ├── importBam.R ├── importData.R ├── importGInteractions.R ├── importScSeqScore.R ├── importScore.R ├── listChromosomes.R ├── listNormalizations.R ├── listResolutions.R ├── loadIdeogram.R ├── lollipop.plot.R ├── optimizeStyle.R ├── parse2GRanges.R ├── parseWIG.R ├── plotGRanges.R ├── plotGeneModel.R ├── plotGeneTrack.R ├── plotIdeo.R ├── plotInteractionDataTrack.R ├── plotLollipopData.R ├── plotLollipops.R ├── plotOneIdeo.R ├── plotScSeqTrack.R ├── plotTrack.R ├── privateUtil.R ├── reduce_GInteractions.R ├── trackViewerPackage.R ├── viewGene.R └── viewTracks.R ├── README.md ├── inst ├── CITATION ├── extdata │ ├── cpsf160.repA_+.wig │ ├── cpsf160.repA_-.wig │ ├── cpsf160.repB_+.wig │ ├── cpsf160.repB_-.wig │ ├── ctcf.sample.rds │ ├── fox2.bed │ ├── gi.rds │ ├── ideo.hg38.rds │ ├── map-pin-red.xml │ ├── methy.bed │ ├── nij.chr6.51120000.53200000.gi.rds │ ├── test.cool │ ├── test.mcool │ ├── testBp.hic │ ├── testFrag.hic │ └── test_chr22.hic ├── htmlwidgets │ ├── browseTracks.js │ ├── browseTracks.yaml │ └── lib │ │ ├── d3 │ │ └── d3.v4.min.js │ │ └── saveSvgAsPng │ │ └── saveSvgAsPng.js └── unitTests │ ├── test_coolerFile.R │ └── test_coverage.R ├── man ├── ARA.Rd ├── GIoperator.Rd ├── GRoperator.Rd ├── addArrowMark.Rd ├── addGuideLine.Rd ├── addInteractionAnnotation.Rd ├── browseTracks-shiny.Rd ├── browseTracks.Rd ├── coverageGR.Rd ├── dandelion.plot.Rd ├── geneModelFromTxdb.Rd ├── geneTrack.Rd ├── getCurTrackViewport.Rd ├── getGeneIDsFromTxDb.Rd ├── getLocation.Rd ├── gi2track.Rd ├── gieStain.Rd ├── gridPlot.Rd ├── ideogramPlot.Rd ├── importBam.Rd ├── importData.Rd ├── importGInteractions.Rd ├── importScSeqScore.Rd ├── importScore.Rd ├── listChromosomes.Rd ├── listNormalizations.Rd ├── listResolutions.Rd ├── loadIdeogram.Rd ├── lolliplot.Rd ├── optimizeStyle.Rd ├── parse2GRanges.Rd ├── parseWIG.Rd ├── plotGRanges.Rd ├── plotIdeo.Rd ├── plotOneIdeo.Rd ├── pos-class.Rd ├── reduce-GInteractions-method.Rd ├── trackList-class.Rd ├── trackStyle-class.Rd ├── trackViewer-package.Rd ├── trackViewerStyle-class.Rd ├── viewGene.Rd ├── viewTracks.Rd ├── xscale-class.Rd └── yaxisStyle-class.Rd ├── tests └── runTests.R └── vignettes ├── changeTracksStyles.Rmd ├── dandelionPlot.Rmd ├── lollipopPlot.Rmd ├── plotInteractionData.Rmd └── trackViewer.Rmd /DESCRIPTION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jianhong/trackViewer/HEAD/DESCRIPTION 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