├── .gitignore ├── LICENSE ├── README.md ├── datasets ├── __init__.py ├── annotation_preparation │ ├── coco_data_generate_for_train_data.ipynb │ └── coco_data_generate_for_valid_data.ipynb ├── coco.py ├── coco_eval.py ├── micrograph.py └── transforms.py ├── denoise_micrographs.py ├── engine.py ├── environment.yml ├── models ├── __init__.py ├── backbone.py ├── detr.py ├── matcher.py ├── position_encoding.py ├── segmentation.py └── transformer.py ├── predict.py ├── train.py ├── util ├── box_ops.py └── misc.py └── visuals ├── CryoTransformer_Performance_Comparison.mp4 ├── CryoTransformer_detailed_pipeline.jpg └── CryorTransformer_pipeline.jpg /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jianlin-cheng/CryoTransformer/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- 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