├── .gitignore ├── LICENSE ├── README.md ├── data ├── README.md ├── SPIN2 │ ├── analyze_perplexity_SPIN.py │ └── define_splits_SPIN2.py ├── build_chain_dataset.py ├── mmtf_util.py ├── ollikainen │ └── split_dataset_by_ollikainen.py └── scheme.png ├── experiments ├── rocklin │ └── mutations │ │ └── collect_mutation_results.py ├── run_redesign.sh ├── run_test.sh ├── run_training.sh ├── seq_only_test.py ├── seq_only_train.py ├── test_redesign.py ├── test_rocklin_mutations.py ├── test_s2s.py ├── train_s2s.py └── utils.py └── struct2seq ├── __init__.py ├── data.py ├── noam_opt.py ├── protein_features.py ├── self_attention.py ├── seq_model.py └── struct2seq.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jingraham/neurips19-graph-protein-design/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: 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