├── .gitignore ├── .travis.yml ├── LICENSE ├── MANIFEST.in ├── README.md ├── _config.yml ├── bin └── tidepy ├── ci ├── install_conda.sh └── setup_conda_env.sh ├── setup.py ├── sync_pypi └── tidepy ├── __init__.py ├── data ├── Gene_Ref.pkl └── model.pkl ├── model.py ├── pred.py └── utils.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jingxinfu/TIDEpy/HEAD/.gitignore -------------------------------------------------------------------------------- /.travis.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jingxinfu/TIDEpy/HEAD/.travis.yml -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jingxinfu/TIDEpy/HEAD/LICENSE -------------------------------------------------------------------------------- /MANIFEST.in: -------------------------------------------------------------------------------- 1 | include TIDE/data/* 2 | -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jingxinfu/TIDEpy/HEAD/README.md -------------------------------------------------------------------------------- /_config.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jingxinfu/TIDEpy/HEAD/_config.yml -------------------------------------------------------------------------------- /bin/tidepy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jingxinfu/TIDEpy/HEAD/bin/tidepy -------------------------------------------------------------------------------- /ci/install_conda.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jingxinfu/TIDEpy/HEAD/ci/install_conda.sh -------------------------------------------------------------------------------- /ci/setup_conda_env.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jingxinfu/TIDEpy/HEAD/ci/setup_conda_env.sh -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jingxinfu/TIDEpy/HEAD/setup.py -------------------------------------------------------------------------------- /sync_pypi: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jingxinfu/TIDEpy/HEAD/sync_pypi -------------------------------------------------------------------------------- /tidepy/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jingxinfu/TIDEpy/HEAD/tidepy/__init__.py -------------------------------------------------------------------------------- /tidepy/data/Gene_Ref.pkl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jingxinfu/TIDEpy/HEAD/tidepy/data/Gene_Ref.pkl -------------------------------------------------------------------------------- /tidepy/data/model.pkl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jingxinfu/TIDEpy/HEAD/tidepy/data/model.pkl -------------------------------------------------------------------------------- /tidepy/model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jingxinfu/TIDEpy/HEAD/tidepy/model.py -------------------------------------------------------------------------------- /tidepy/pred.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jingxinfu/TIDEpy/HEAD/tidepy/pred.py -------------------------------------------------------------------------------- /tidepy/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jingxinfu/TIDEpy/HEAD/tidepy/utils.py --------------------------------------------------------------------------------