├── .Rbuildignore ├── .gitignore ├── DESCRIPTION ├── Introduction to the 'V.PhyloMaker2' package ├── NAMESPACE ├── R ├── ancestor.R ├── at.node.R ├── bind.relative.R ├── build.nodes.1.R ├── build.nodes.2.R ├── cluster.R ├── ext.node.R ├── int.node.R └── phylo.maker.R ├── README.md ├── V.PhyloMaker2.Rproj ├── data ├── GBOTB.extended.LCVP.rda ├── GBOTB.extended.TPL.rda ├── GBOTB.extended.WP.rda ├── nodes.info.1.LCVP.rda ├── nodes.info.1.TPL.rda ├── nodes.info.1.WP.rda ├── nodes.info.2.LCVP.rda ├── nodes.info.2.TPL.rda ├── nodes.info.2.WP.rda ├── tips.info.LCVP.rda ├── tips.info.TPL.rda └── tips.info.WP.rda └── man ├── GBOTB.extended.LCVP.Rd ├── GBOTB.extended.TPL.Rd ├── GBOTB.extended.WP.Rd ├── at.node.Rd ├── bind.relative.Rd ├── build.nodes.1.Rd ├── build.nodes.2.Rd ├── ext.node.Rd ├── int.node.Rd ├── nodes.info.1.LCVP.Rd ├── nodes.info.1.TPL.Rd ├── nodes.info.1.WP.Rd ├── nodes.info.2.LCVP.Rd ├── nodes.info.2.TPL.Rd ├── nodes.info.2.WP.Rd ├── phylo.maker.Rd ├── tips.info.LCVP.Rd ├── 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