├── .gitattributes ├── .gitmodules ├── .ipynb_checkpoints └── README-checkpoint.md ├── LICENSE ├── README.md └── notebooks ├── .ipynb_checkpoints ├── 1_create_graph_dataset-checkpoint.ipynb ├── 2_cv_splits-checkpoint.ipynb ├── 3_fit_gnn_model-checkpoint.ipynb ├── 4_extract_gcn_features-checkpoint.ipynb ├── 5_optional_uncertainty_refinement-checkpoint.ipynb ├── 6_extract_mapper_interactions-checkpoint.ipynb ├── 7_associations_clinical_endpoints-checkpoint.ipynb └── 8_visualize-checkpoint.ipynb ├── 1_create_graph_dataset.ipynb ├── 2_cv_splits.ipynb ├── 3_fit_gnn_model.ipynb ├── 4_extract_gcn_features.ipynb ├── 5_optional_uncertainty_refinement.ipynb ├── 6_extract_mapper_interactions.ipynb ├── 7_associations_clinical_endpoints.ipynb └── 8_visualize.ipynb /.gitattributes: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jlevy44/WSI-GTFE/HEAD/.gitattributes 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