├── .cargo └── config.toml ├── .gitignore ├── Cargo.toml ├── LICENSE ├── README.md ├── RELEASES.md ├── src ├── algorithms.rs ├── algorithms │ └── tests.rs ├── bin │ ├── benchmark.rs │ ├── gbunzip.rs │ └── gbz-extract.rs ├── bwt.rs ├── bwt │ └── tests.rs ├── gbwt.rs ├── gbwt │ └── tests.rs ├── gbz.rs ├── gbz │ └── tests.rs ├── graph.rs ├── graph │ └── tests.rs ├── headers.rs ├── internal.rs ├── lib.rs ├── support.rs └── support │ └── tests.rs └── test-data ├── example.gbwt ├── example.gbz ├── example.gfa ├── example.gg ├── example.meta ├── translation.gbwt ├── translation.gbz ├── translation.gfa ├── translation.gg ├── with-empty.gbwt └── with-empty.txt /.cargo/config.toml: -------------------------------------------------------------------------------- 1 | [build] 2 | rustflags = "-C target-cpu=native" 3 | -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 1 | /target 2 | Cargo.lock 3 | .vscode 4 | -------------------------------------------------------------------------------- /Cargo.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jltsiren/gbwt-rs/HEAD/Cargo.toml -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jltsiren/gbwt-rs/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jltsiren/gbwt-rs/HEAD/README.md -------------------------------------------------------------------------------- /RELEASES.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jltsiren/gbwt-rs/HEAD/RELEASES.md -------------------------------------------------------------------------------- /src/algorithms.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jltsiren/gbwt-rs/HEAD/src/algorithms.rs -------------------------------------------------------------------------------- /src/algorithms/tests.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jltsiren/gbwt-rs/HEAD/src/algorithms/tests.rs -------------------------------------------------------------------------------- /src/bin/benchmark.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jltsiren/gbwt-rs/HEAD/src/bin/benchmark.rs -------------------------------------------------------------------------------- /src/bin/gbunzip.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jltsiren/gbwt-rs/HEAD/src/bin/gbunzip.rs -------------------------------------------------------------------------------- /src/bin/gbz-extract.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jltsiren/gbwt-rs/HEAD/src/bin/gbz-extract.rs -------------------------------------------------------------------------------- /src/bwt.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jltsiren/gbwt-rs/HEAD/src/bwt.rs -------------------------------------------------------------------------------- /src/bwt/tests.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jltsiren/gbwt-rs/HEAD/src/bwt/tests.rs -------------------------------------------------------------------------------- /src/gbwt.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jltsiren/gbwt-rs/HEAD/src/gbwt.rs -------------------------------------------------------------------------------- /src/gbwt/tests.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jltsiren/gbwt-rs/HEAD/src/gbwt/tests.rs -------------------------------------------------------------------------------- /src/gbz.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jltsiren/gbwt-rs/HEAD/src/gbz.rs -------------------------------------------------------------------------------- /src/gbz/tests.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jltsiren/gbwt-rs/HEAD/src/gbz/tests.rs -------------------------------------------------------------------------------- /src/graph.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jltsiren/gbwt-rs/HEAD/src/graph.rs -------------------------------------------------------------------------------- /src/graph/tests.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jltsiren/gbwt-rs/HEAD/src/graph/tests.rs -------------------------------------------------------------------------------- /src/headers.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jltsiren/gbwt-rs/HEAD/src/headers.rs -------------------------------------------------------------------------------- /src/internal.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jltsiren/gbwt-rs/HEAD/src/internal.rs -------------------------------------------------------------------------------- /src/lib.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jltsiren/gbwt-rs/HEAD/src/lib.rs -------------------------------------------------------------------------------- /src/support.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jltsiren/gbwt-rs/HEAD/src/support.rs -------------------------------------------------------------------------------- /src/support/tests.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jltsiren/gbwt-rs/HEAD/src/support/tests.rs -------------------------------------------------------------------------------- /test-data/example.gbwt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jltsiren/gbwt-rs/HEAD/test-data/example.gbwt -------------------------------------------------------------------------------- /test-data/example.gbz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jltsiren/gbwt-rs/HEAD/test-data/example.gbz -------------------------------------------------------------------------------- /test-data/example.gfa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jltsiren/gbwt-rs/HEAD/test-data/example.gfa -------------------------------------------------------------------------------- /test-data/example.gg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jltsiren/gbwt-rs/HEAD/test-data/example.gg -------------------------------------------------------------------------------- /test-data/example.meta: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jltsiren/gbwt-rs/HEAD/test-data/example.meta -------------------------------------------------------------------------------- /test-data/translation.gbwt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jltsiren/gbwt-rs/HEAD/test-data/translation.gbwt -------------------------------------------------------------------------------- /test-data/translation.gbz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jltsiren/gbwt-rs/HEAD/test-data/translation.gbz -------------------------------------------------------------------------------- /test-data/translation.gfa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jltsiren/gbwt-rs/HEAD/test-data/translation.gfa -------------------------------------------------------------------------------- /test-data/translation.gg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jltsiren/gbwt-rs/HEAD/test-data/translation.gg -------------------------------------------------------------------------------- /test-data/with-empty.gbwt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jltsiren/gbwt-rs/HEAD/test-data/with-empty.gbwt -------------------------------------------------------------------------------- /test-data/with-empty.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jltsiren/gbwt-rs/HEAD/test-data/with-empty.txt --------------------------------------------------------------------------------