├── .gitignore ├── LICENSE.txt ├── README.md ├── STARTapp.Rproj ├── _config.yml ├── data ├── .Rapp.history ├── .gitignore ├── exampleanalysisres_short.csv ├── examplecounts_short.csv ├── mousecounts_example.RData ├── mousecounts_example.csv ├── mousecounts_example_analysis_results.RData ├── mousecounts_example_analysis_results_old.RData ├── mousecounts_example_analyzed.RData ├── mousecounts_example_analyzed.csv ├── testdata_analyzed_onecomparison.csv ├── testdata_counts_onegroup.csv ├── testdata_counts_onerep.csv ├── testdata_counts_prot.csv ├── testdata_counts_prot_uploaded.RData └── testdata_noncounts.csv ├── fun-analysisres.R ├── fun-analyzecounts.R ├── fun-dotplot.R ├── fun-groupplots.R ├── fun-heatmap.R ├── fun-input-analyze-data.R ├── google-analytics.js ├── helpers.R ├── index.md ├── instructions ├── .gitignore ├── Instructions.docx ├── Instructions.html ├── Instructions.md ├── Instructions.pdf ├── ex_click_rdata.png ├── exampleanalysisdata.png ├── examplecounts.png ├── explot_boxplot.png ├── explot_heatmap.png ├── explot_pca.png ├── explot_volcano.png ├── landing.md ├── news.md └── terms.md ├── rsconnect ├── .gitignore └── shinyapps.io │ ├── .gitignore │ └── kcvi │ ├── .gitignore │ ├── START.dcf │ ├── START_devel.dcf │ └── start_testing.dcf ├── save_example_data.R ├── server-analysisres.R ├── server-data.R ├── server-dotplot.R ├── server-filterdata.R ├── server-heatmap.R ├── server-inputdata.R ├── server-samplegroupplots.R ├── server.R ├── tests.R ├── tests └── countdata_edgeR.R ├── ui-tab-analysisres.R ├── ui-tab-dotplot.R ├── ui-tab-filterdata.R ├── ui-tab-heatmap.R ├── ui-tab-help.R ├── ui-tab-inputdata.R ├── ui-tab-landing.R ├── ui-tab-news.R ├── ui-tab-samplegroupplots.R ├── ui-tab-terms.R ├── ui.R └── www ├── .gitignore ├── app.css ├── bootstrap.min.united.updated.css ├── ex_click_rdata.png ├── exampleanalysisdata.png ├── examplecounts.png ├── explot_boxplot.png ├── explot_heatmap.png ├── explot_pca.png └── explot_volcano.png /.gitignore: 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