├── BPscRNAseq.Rproj ├── DESCRIPTION ├── NAMESPACE ├── R ├── .DS_Store ├── airway2inferCNV.R ├── anno_bed.R ├── cal_DM.R ├── change_ID_of_exprSet.R ├── counts2exprSet.R ├── create_rData.R ├── create_rdata.Rmd ├── create_rdata.html ├── exprSet2CNV.R ├── exprSet2cellcycle.R ├── exprSet2inferCNV.R ├── get_genomic_positons.R ├── ht_cnv.R └── pam50subtyping.R ├── data ├── .DS_Store ├── airway_exprSet.rda ├── human2mouse.csv ├── human2mouse_symbols.rda ├── human_geneInfo_genecode_v25.rda ├── human_geneLength_genecode_v25.rda ├── mouse.gene.positions ├── mouse_geneInfo_genecode_vM12.rda └── mouse_geneLength_genecode_vM12.rda ├── man ├── .DS_Store ├── airway2inferCNV.Rd ├── anno_bed.Rd ├── cal_DM.Rd ├── change_ID_of_expreSet.Rd ├── counts2exprSet.Rd ├── exprSet2CNV.Rd ├── exprSet2cellcycle.Rd ├── exprSet2inferCNV.Rd ├── get_genomic_positions.Rd ├── ht_cnv.Rd └── pam50subtyping.Rd ├── readme.md └── test.pdf /BPscRNAseq.Rproj: 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