├── .DS_Store ├── .gitignore ├── 2016-WGCNA-HCC-hub-gene.pdf ├── CytoscapeInput-edges-brown.txt ├── CytoscapeInput-nodes-brown.txt ├── GSE48213-wgcna-input.RData ├── GSE48213-wgcna.R ├── WGCNA_GBMTutorialHorvath.pdf ├── WGCNA_YeastTutorialHorvath.pdf ├── figures ├── .DS_Store ├── WGCNA_weight.png ├── sample-subtype-cluster.png ├── step2-beta-value.png ├── step4-genes-modules.png ├── step5-Module-trait-relationships.png ├── step6-Module_membership-gene_significance.png ├── step7-Eigengene-adjacency-heatmap.png ├── step7-Eigengene-dendrogram-hclust.png ├── step7-Eigengene-dendrogram.png └── step7-Network-heatmap.png ├── jimmy.Rproj ├── readme.assets ├── image-20190928155237950.png └── image-20190928155929933.png ├── readme.md └── simulated ├── Simulated-01-dataSimulation.pdf ├── Simulated-02-dataLoading.pdf ├── Simulated-03-Preprocessing.pdf ├── Simulated-04-StandardScreening.pdf ├── Simulated-05-NetworkConstruction.pdf ├── Simulated-06-RelatingToExt.pdf ├── Simulated-07-Membership.pdf ├── Simulated-08-Visualization.pdf ├── readme.assets ├── image-20190928155943760.png ├── sample-subtype-cluster.png ├── step5-Module-trait-relationships.png └── step7-Eigengene-dendrogram.png └── readme.md /.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jmzeng1314/my_WGCNA/HEAD/.DS_Store -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jmzeng1314/my_WGCNA/HEAD/.gitignore -------------------------------------------------------------------------------- /2016-WGCNA-HCC-hub-gene.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jmzeng1314/my_WGCNA/HEAD/2016-WGCNA-HCC-hub-gene.pdf -------------------------------------------------------------------------------- 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