├── .Rbuildignore ├── .gitattributes ├── .github ├── .gitignore └── workflows │ ├── R-CMD-check.yaml │ └── test-coverage.yaml ├── .gitignore ├── DESCRIPTION ├── NAMESPACE ├── R ├── SOptim_AuxFunctions.R ├── SOptim_CalcSegmentStats.R ├── SOptim_CheckOptimFuncParameters.R ├── SOptim_ClassificationFunctions.R ├── SOptim_DataBalancing.R ├── SOptim_ExtractFeaturesIndices.R ├── SOptim_FitnessFunctions.R ├── SOptim_GetTrainData.R ├── SOptim_GridSearch.R ├── SOptim_ImportConvertData.R ├── SOptim_OptimizationFunctions.R ├── SOptim_PerformanceEval.R ├── SOptim_PrepFullDataset.R ├── SOptim_RandSearchAlgorithm.R ├── SOptim_RasterOutputs.R ├── SOptim_RasterTiling.R ├── SOptim_SegmentationFunctions.R ├── SOptim_SimulateTestData-v1.R ├── SOptim_UnsupervisedClassification.R ├── SOptim_VectorOps_DiscrepancyMeasures.R └── zzz.R ├── README.md ├── SegOptim.Rproj ├── inst └── PyScripts │ ├── ArcGIS_MShift.py │ └── RSGISLib_Shep.py ├── man ├── GerritySkillScore.Rd ├── NRV.omit.Rd ├── SegOptim-package.Rd ├── StRS.Rd ├── adjustRangesFromCentralPoint.Rd ├── aggregateMultiStats.Rd ├── aucSingleClass.Rd ├── balanceMulticlassData.Rd ├── calcDiscrepancyMeasure_ED2.Rd ├── calcStats.Rd ├── calcStatsFinish.Rd ├── calcStatsStart.Rd ├── calculateNDIcombinations.Rd ├── calculateSegmentStats.Rd ├── calibrateClassifier.Rd ├── checkEvalFun.Rd ├── checkPrintSegmentationParams.Rd ├── chunk2.Rd ├── classificationAlgorithms.Rd ├── classifierParameters.Rd ├── clusteringRaster.Rd ├── convertToSAGA.Rd ├── createDataSplits.Rd ├── createRasterTiles.Rd ├── dataBalancing.Rd ├── dataBalancingMethods.Rd ├── doCleanUpActions.Rd ├── doInputVerification.Rd ├── drawRandom.Rd ├── evalPerformanceClassifier.Rd ├── evalPerformanceGeneric.Rd ├── evaluatePerformance.Rd ├── evaluationMethods.Rd ├── evaluationMetrics_multiClass.Rd ├── evaluationMetrics_singleClass.Rd ├── f2int.Rd ├── figures │ └── logo.png ├── fitFuncGeneric.Rd ├── gaOptimizeSegmentationParams.Rd ├── generateConfusionMatrix.Rd ├── generateDefaultClassifierParams.Rd ├── generateFormula.Rd ├── getPythonFile.Rd ├── getTrainData.Rd ├── getTrainData_.Rd ├── getTrainRasterSegments.Rd ├── gssSingleClass.Rd ├── importToGRASS.Rd ├── iterateFitnessFunc.Rd ├── kappaSingleClass.Rd ├── modal_value.Rd ├── numSampPerStrata.Rd ├── outputSOptimCalData.Rd ├── predict.knn.Rd ├── predictSegments.Rd ├── prepareCalData.Rd ├── print.SOptim.ClassifierSummary.Rd ├── pssSingleClass.Rd ├── randString.Rd ├── randomSearchOptim.Rd ├── readDataByTile.Rd ├── repBSlash.Rd ├── replaceDefaultClassificationParams.Rd ├── searchOptimSegmentationParams.Rd ├── segmentationGeneric.Rd ├── segmentationMethods.Rd ├── segmentationParamNames.Rd ├── segmentation_ArcGIS_MShift.Rd ├── segmentation_GRASS_RG.Rd ├── segmentation_OTB_LSMS.Rd ├── segmentation_OTB_LSMS2.Rd ├── segmentation_RSGISLib_Shep.Rd ├── segmentation_SAGA_SRG.Rd ├── segmentation_Terralib_Baatz.Rd ├── segmentation_Terralib_MRGrow.Rd ├── simRasterFeatures.Rd ├── simRasterSegments2.Rd ├── simRasterTrain.Rd ├── summary.SOptim.Classifier.Rd └── zonalDT.Rd └── tests ├── testthat.R └── testthat ├── _CONFIG_.R ├── data ├── S1_sc │ ├── SAGA │ │ ├── segmentationFeatures_b1.sdat │ │ ├── segmentationFeatures_b1.sgrd │ │ ├── segmentationFeatures_b2.sdat │ │ ├── segmentationFeatures_b2.sgrd │ │ ├── segmentationFeatures_b3.sdat │ │ ├── segmentationFeatures_b3.sgrd │ │ ├── segmentationFeatures_b4.sdat │ │ └── segmentationFeatures_b4.sgrd │ ├── classificationFeatures.tif │ ├── segm_test_otb2.tif │ ├── segmentationFeatures.tif │ ├── trainAreas.tfw │ ├── trainAreas.tif │ ├── trainAreas.tif.aux.xml │ ├── trainAreas.tif.ovr │ ├── trainAreas.tif.vat.dbf │ ├── trainAreas.tif.xml │ ├── trainPoints.dbf │ ├── trainPoints.prj │ ├── trainPoints.shp │ └── trainPoints.shx └── S2_mc │ ├── SAGA │ ├── segmentationFeatures_b1.sdat │ ├── segmentationFeatures_b1.sgrd │ ├── segmentationFeatures_b2.sdat │ ├── segmentationFeatures_b2.sgrd │ ├── segmentationFeatures_b3.sdat │ └── segmentationFeatures_b3.sgrd │ ├── TrainClasses_codes.csv │ ├── classificationFeatures.tif │ ├── segmentationFeatures.tif │ ├── trainAreas.tfw │ ├── trainAreas.tif │ ├── trainAreas.tif.aux.xml │ ├── trainAreas.tif.vat.dbf │ └── trainAreas.tif.xml ├── test-CalculateSegmentStats.R ├── test-CheckOptimFuncParameters.R ├── test-ClassificationFunctions.R ├── test-DataBalancing.R ├── test-FeatureExtractFuns.R ├── test-GridSearch.R ├── test-PrepFullDataset.R ├── test-RasterOutputs.R ├── test-RasterTiling.R ├── test-SegmentationFuns.R ├── test-SimulateTestData.R ├── test-UnsupervisedClassification.R ├── test-UserDefinedEvaluationFun.R ├── test-auxFunctions.R ├── test-getTrainData.R ├── test-performanceEval.R └── test-readTestingData.R /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/joaofgoncalves/SegOptim/HEAD/.Rbuildignore -------------------------------------------------------------------------------- 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