├── .gitignore ├── README.md ├── data ├── aminer_dataset.py ├── create_aminer_dataset.py ├── data.py ├── parse_aminer_citation.py └── rank_aminer.py ├── diagnostics └── ppi_test.py ├── main.py ├── maml.py ├── models ├── __init__.py ├── autoencoder.py ├── layers.py └── models.py ├── plotting ├── plot_comet.py └── plot_wandb.py ├── scripts ├── run_adamic_baseline.sh ├── run_baselines.sh ├── run_hyperparam.sh ├── run_maml.sh ├── run_plotter.sh ├── run_plotter_aminer_grad_wandb.sh ├── run_plotter_enzymes.sh ├── run_plotter_firstmmdb.sh ├── run_plotter_firstmmdb_grad_wandb.sh ├── run_plotter_ppi_grad_wandb.sh ├── run_plotter_ppi_wandb.sh ├── run_plotter_reddit.sh ├── run_ppi_best_gs.sh └── run_random.sh ├── utils └── utils.py └── vgae.py /.gitignore: -------------------------------------------------------------------------------- 1 | *.txt 2 | *.pkl 3 | settings.json 4 | *.env 5 | -------------------------------------------------------------------------------- /README.md: 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