├── .github └── workflows │ └── publish.yml ├── .gitignore ├── LICENSE ├── MANIFEST.in ├── README.md ├── borzoi_pytorch ├── __init__.py ├── config_borzoi.py ├── gene_utils.py ├── precomputed │ └── targets.txt ├── pytorch_borzoi_helpers.py ├── pytorch_borzoi_model.py ├── pytorch_borzoi_transformer.py └── pytorch_borzoi_utils.py ├── notebooks ├── pytorch_borzoi_example_eqtl_chr10_116952944_T_C.ipynb └── weight_conversion.ipynb ├── setup.py ├── wt_pred_across_folds.npy └── wt_seq.npy /.github/workflows/publish.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/johahi/borzoi-pytorch/HEAD/.github/workflows/publish.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/johahi/borzoi-pytorch/HEAD/.gitignore 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