├── .Rbuildignore ├── .clang-format ├── .envrc ├── .github ├── .gitignore ├── copilot-instructions.md ├── dependabot.yml └── workflows │ ├── R-CMD-check.yaml │ ├── pkgdown.yaml │ ├── recheck.yaml │ ├── release.yaml │ ├── rhub.yaml │ └── test-coverage.yaml ├── .gitignore ├── .lintr ├── .prettierrc.toml ├── CITATION.cff ├── CODE_OF_CONDUCT.md ├── CRAN-SUBMISSION ├── DESCRIPTION ├── LICENSE.md ├── NAMESPACE ├── NEWS.md ├── R ├── RcppExports.R ├── SLOPE-package.R ├── coef.R ├── cv.R ├── data.R ├── deviance.R ├── interpolate_coefficients.R ├── interpolate_penalty.R ├── plot.R ├── plot_diagnostics.R ├── predict.R ├── preprocess_response.R ├── print.R ├── refit.R ├── regularization_weights.R ├── score.R ├── setup_diagnostics.R ├── slope.R ├── sorted_l1_prox.R ├── summary.R ├── train_slope.R └── utils.R ├── README.Rmd ├── README.md ├── SLOPE.Rproj ├── Taskfile.yml ├── _pkgdown.yml ├── air.toml ├── codecov.yml ├── cran-comments.md ├── data-raw └── datasets.R ├── data ├── abalone.rda ├── bodyfat.rda ├── glioma.rda ├── heart.rda ├── student.rda └── wine.rda ├── flake.lock ├── flake.nix ├── inst ├── CITATION ├── COPYRIGHTS ├── WORDLIST └── include │ ├── slope.h │ └── slope │ ├── clusters.h │ ├── constants.h │ ├── cv.h │ ├── diagnostics.h │ ├── eigen_compat.h │ ├── estimate_alpha.h │ ├── folds.h │ ├── jit_normalization.h │ ├── logger.h │ ├── losses │ ├── logistic.h │ ├── loss.h │ ├── multinomial.h │ ├── poisson.h │ ├── quadratic.h │ └── setup_loss.h │ ├── math.h │ ├── normalize.h │ ├── ols.h │ ├── regularization_sequence.h │ ├── score.h │ ├── screening.h │ ├── slope.h │ ├── slope_fit.h │ ├── slope_path.h │ ├── solvers │ ├── hybrid.h │ ├── hybrid_cd.h │ ├── pgd.h │ ├── setup_solver.h │ ├── slope_threshold.h │ └── solver.h │ ├── sorted_l1_norm.h │ ├── threads.h │ ├── timer.h │ └── utils.h ├── man ├── SLOPE-package.Rd ├── SLOPE.Rd ├── abalone.Rd ├── bodyfat.Rd ├── coef.SLOPE.Rd ├── createFolds.Rd ├── cvSLOPE.Rd ├── deviance.SLOPE.Rd ├── figures │ ├── README-unnamed-chunk-5-1.png │ ├── README-unnamed-chunk-6-1.png │ └── logo.png ├── glioma.Rd ├── heart.Rd ├── interpolateCoefficients.Rd ├── interpolatePenalty.Rd ├── plot.SLOPE.Rd ├── plot.TrainedSLOPE.Rd ├── plotClusters.Rd ├── plotDiagnostics.Rd ├── predict.SLOPE.Rd ├── print.SLOPE.Rd ├── print.summary_SLOPE.Rd ├── print.summary_TrainedSLOPE.Rd ├── refit.Rd ├── regularizationWeights.Rd ├── score.Rd ├── setup_diagnostics.Rd ├── sortedL1Prox.Rd ├── student.Rd ├── summary.SLOPE.Rd ├── summary.TrainedSLOPE.Rd ├── trainSLOPE.Rd └── wine.Rd ├── pkgdown └── favicon │ ├── apple-touch-icon-120x120.png │ ├── apple-touch-icon-152x152.png │ ├── apple-touch-icon-180x180.png │ ├── apple-touch-icon-60x60.png │ ├── apple-touch-icon-76x76.png │ ├── apple-touch-icon.png │ ├── favicon-16x16.png │ ├── favicon-32x32.png │ ├── favicon-96x96.png │ ├── favicon.ico │ ├── favicon.svg │ ├── site.webmanifest │ ├── web-app-manifest-192x192.png │ └── web-app-manifest-512x512.png ├── src ├── .gitignore ├── Makevars ├── RcppExports.cpp ├── r-exports.cpp ├── rcpp_cv.cpp ├── rcpp_slope.cpp ├── setup_model.cpp ├── setup_model.h └── slope │ ├── DO_NOT_MODIFY │ ├── clusters.cpp │ ├── cv.cpp │ ├── folds.cpp │ ├── kkt_check.cpp │ ├── kkt_check.h │ ├── logger.cpp │ ├── losses │ ├── logistic.cpp │ ├── loss.cpp │ ├── multinomial.cpp │ ├── poisson.cpp │ ├── quadratic.cpp │ └── setup_loss.cpp │ ├── math.cpp │ ├── normalize.cpp │ ├── qnorm.cpp │ ├── qnorm.h │ ├── regularization_sequence.cpp │ ├── score.cpp │ ├── screening.cpp │ ├── slope.cpp │ ├── solvers │ ├── hybrid.cpp │ ├── hybrid_cd.cpp │ ├── pgd.cpp │ ├── setup_solver.cpp │ └── slope_threshold.cpp │ ├── sorted_l1_norm.cpp │ ├── timer.cpp │ └── utils.cpp ├── tests ├── spelling.R ├── testthat.R └── testthat │ ├── setup.R │ ├── test-alpha-scaling.R │ ├── test-assertions.R │ ├── test-bigmatrix.R │ ├── test-binomial.R │ ├── test-coef.R │ ├── test-cv.R │ ├── test-deviance.R │ ├── test-diagnostics.R │ ├── test-gaussian.R │ ├── test-lambda-sequence.R │ 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