├── .gitattributes ├── .gitignore ├── LICENSE ├── MANIFEST.in ├── README.md ├── environment.yml ├── imgs ├── napari_cellseg.gif └── sample_image.tiff ├── pyproject.toml ├── requirements.txt ├── segmentation_models_pytorch ├── __init__.py ├── __pycache__ │ ├── __init__.cpython-37.pyc │ ├── __init__.cpython-38.pyc │ ├── __init__.cpython-39.pyc │ ├── __version__.cpython-37.pyc │ ├── __version__.cpython-38.pyc │ └── __version__.cpython-39.pyc ├── __version__.py ├── base │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-37.pyc │ │ ├── __init__.cpython-38.pyc │ │ ├── __init__.cpython-39.pyc │ │ ├── heads.cpython-37.pyc │ │ ├── heads.cpython-38.pyc │ │ ├── heads.cpython-39.pyc │ │ ├── initialization.cpython-37.pyc │ │ ├── initialization.cpython-38.pyc │ │ ├── initialization.cpython-39.pyc │ │ ├── model.cpython-37.pyc │ │ ├── model.cpython-38.pyc │ │ ├── model.cpython-39.pyc │ │ ├── modules.cpython-37.pyc │ │ ├── modules.cpython-38.pyc │ │ └── modules.cpython-39.pyc │ ├── heads.py │ ├── initialization.py │ ├── model.py │ └── modules.py ├── datasets │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-37.pyc │ │ ├── __init__.cpython-38.pyc │ │ ├── __init__.cpython-39.pyc │ │ ├── oxford_pet.cpython-37.pyc │ │ ├── oxford_pet.cpython-38.pyc │ │ └── oxford_pet.cpython-39.pyc │ └── oxford_pet.py ├── decoders │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-37.pyc │ │ ├── __init__.cpython-38.pyc │ │ └── __init__.cpython-39.pyc │ ├── deeplabv3 │ │ ├── __init__.py │ │ ├── __pycache__ │ │ │ ├── __init__.cpython-37.pyc │ │ │ ├── __init__.cpython-38.pyc │ │ │ ├── __init__.cpython-39.pyc │ │ │ ├── decoder.cpython-37.pyc │ │ │ ├── decoder.cpython-38.pyc │ │ │ ├── decoder.cpython-39.pyc │ │ │ ├── model.cpython-37.pyc │ │ │ ├── model.cpython-38.pyc │ │ │ └── model.cpython-39.pyc │ │ ├── decoder.py │ │ └── model.py │ ├── fpn │ │ ├── __init__.py │ │ ├── __pycache__ │ │ │ ├── __init__.cpython-37.pyc │ │ │ ├── __init__.cpython-38.pyc │ │ │ ├── __init__.cpython-39.pyc │ │ │ ├── decoder.cpython-37.pyc │ │ │ ├── decoder.cpython-38.pyc │ │ │ ├── decoder.cpython-39.pyc │ │ │ ├── model.cpython-37.pyc │ │ │ ├── model.cpython-38.pyc │ │ │ └── model.cpython-39.pyc │ │ ├── decoder.py │ │ └── model.py │ ├── linknet │ │ ├── __init__.py │ │ ├── __pycache__ │ │ │ ├── __init__.cpython-37.pyc │ │ │ ├── __init__.cpython-38.pyc │ │ │ ├── __init__.cpython-39.pyc │ │ │ ├── decoder.cpython-37.pyc │ │ │ ├── decoder.cpython-38.pyc │ │ │ ├── decoder.cpython-39.pyc │ │ │ ├── model.cpython-37.pyc │ │ │ ├── model.cpython-38.pyc │ │ │ └── model.cpython-39.pyc │ │ ├── decoder.py │ │ └── model.py │ ├── manet │ │ ├── __init__.py │ │ ├── __pycache__ │ │ │ ├── __init__.cpython-37.pyc │ │ │ ├── __init__.cpython-38.pyc │ │ │ ├── __init__.cpython-39.pyc │ │ │ ├── decoder.cpython-37.pyc │ │ │ ├── decoder.cpython-38.pyc │ │ │ ├── decoder.cpython-39.pyc │ │ │ ├── model.cpython-37.pyc │ │ │ ├── model.cpython-38.pyc │ │ │ └── model.cpython-39.pyc │ │ ├── decoder.py │ │ └── model.py │ ├── pan │ │ ├── __init__.py │ │ ├── __pycache__ │ │ │ ├── __init__.cpython-37.pyc │ │ │ ├── __init__.cpython-38.pyc │ │ │ ├── __init__.cpython-39.pyc │ │ │ ├── decoder.cpython-37.pyc │ │ │ ├── decoder.cpython-38.pyc │ │ │ ├── decoder.cpython-39.pyc │ │ │ ├── model.cpython-37.pyc │ │ │ ├── model.cpython-38.pyc │ │ │ └── model.cpython-39.pyc │ │ ├── decoder.py │ │ └── model.py │ ├── pspnet │ │ ├── __init__.py │ │ ├── __pycache__ │ │ │ ├── __init__.cpython-37.pyc │ │ │ ├── __init__.cpython-38.pyc │ │ │ ├── __init__.cpython-39.pyc │ │ │ ├── decoder.cpython-37.pyc │ │ │ ├── decoder.cpython-38.pyc │ │ │ ├── decoder.cpython-39.pyc │ │ │ ├── model.cpython-37.pyc │ │ │ ├── model.cpython-38.pyc │ │ │ └── model.cpython-39.pyc │ │ ├── decoder.py │ │ └── model.py │ ├── unet │ │ ├── __init__.py │ │ ├── __pycache__ │ │ │ ├── __init__.cpython-37.pyc │ │ │ ├── __init__.cpython-38.pyc │ │ │ ├── __init__.cpython-39.pyc │ │ │ ├── decoder.cpython-37.pyc │ │ │ ├── decoder.cpython-38.pyc │ │ │ ├── decoder.cpython-39.pyc │ │ │ ├── model.cpython-37.pyc │ │ │ ├── model.cpython-38.pyc │ │ │ └── model.cpython-39.pyc │ │ ├── decoder.py │ │ └── model.py │ └── unetplusplus │ │ ├── __init__.py │ │ ├── __pycache__ │ │ ├── __init__.cpython-37.pyc │ │ ├── __init__.cpython-38.pyc │ │ ├── __init__.cpython-39.pyc │ │ ├── decoder.cpython-37.pyc │ │ ├── decoder.cpython-38.pyc │ │ ├── decoder.cpython-39.pyc │ │ ├── model.cpython-37.pyc │ │ ├── model.cpython-38.pyc │ │ └── model.cpython-39.pyc │ │ ├── decoder.py │ │ └── model.py ├── encoders │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-37.pyc │ │ ├── __init__.cpython-38.pyc │ │ ├── __init__.cpython-39.pyc │ │ ├── _base.cpython-37.pyc │ │ ├── _base.cpython-38.pyc │ │ ├── _base.cpython-39.pyc │ │ ├── _preprocessing.cpython-39.pyc │ │ ├── _utils.cpython-37.pyc │ │ ├── _utils.cpython-38.pyc │ │ ├── _utils.cpython-39.pyc │ │ ├── densenet.cpython-39.pyc │ │ ├── dpn.cpython-39.pyc │ │ ├── efficientnet.cpython-39.pyc │ │ ├── inceptionresnetv2.cpython-39.pyc │ │ ├── inceptionv4.cpython-39.pyc │ │ ├── mix_transformer.cpython-37.pyc │ │ ├── mix_transformer.cpython-38.pyc │ │ ├── mix_transformer.cpython-39.pyc │ │ ├── mobilenet.cpython-39.pyc │ │ ├── resnet.cpython-39.pyc │ │ ├── senet.cpython-39.pyc │ │ ├── timm_efficientnet.cpython-39.pyc │ │ ├── timm_gernet.cpython-39.pyc │ │ ├── timm_mobilenetv3.cpython-39.pyc │ │ ├── timm_regnet.cpython-39.pyc │ │ ├── timm_res2net.cpython-39.pyc │ │ ├── timm_resnest.cpython-39.pyc │ │ ├── timm_sknet.cpython-39.pyc │ │ ├── timm_universal.cpython-39.pyc │ │ ├── vgg.cpython-39.pyc │ │ └── xception.cpython-39.pyc │ ├── _base.py │ ├── _preprocessing.py │ ├── _utils.py │ ├── densenet.py │ ├── dpn.py │ ├── efficientnet.py │ ├── inceptionresnetv2.py │ ├── inceptionv4.py │ ├── mix_transformer.py │ ├── mobilenet.py │ ├── resnet.py │ ├── senet.py │ ├── timm_efficientnet.py │ ├── timm_gernet.py │ ├── timm_mobilenetv3.py │ ├── timm_regnet.py │ ├── timm_res2net.py │ ├── timm_resnest.py │ ├── timm_sknet.py │ ├── timm_universal.py │ ├── vgg.py │ └── xception.py ├── losses │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-37.pyc │ │ ├── __init__.cpython-38.pyc │ │ ├── __init__.cpython-39.pyc │ │ ├── _functional.cpython-37.pyc │ │ ├── _functional.cpython-38.pyc │ │ ├── _functional.cpython-39.pyc │ │ ├── constants.cpython-37.pyc │ │ ├── constants.cpython-38.pyc │ │ ├── constants.cpython-39.pyc │ │ ├── dice.cpython-37.pyc │ │ ├── dice.cpython-38.pyc │ │ ├── dice.cpython-39.pyc │ │ ├── focal.cpython-37.pyc │ │ ├── focal.cpython-38.pyc │ │ ├── focal.cpython-39.pyc │ │ ├── jaccard.cpython-37.pyc │ │ ├── jaccard.cpython-38.pyc │ │ ├── jaccard.cpython-39.pyc │ │ ├── lovasz.cpython-37.pyc │ │ ├── lovasz.cpython-38.pyc │ │ ├── lovasz.cpython-39.pyc │ │ ├── mcc.cpython-37.pyc │ │ ├── mcc.cpython-38.pyc │ │ ├── mcc.cpython-39.pyc │ │ ├── soft_bce.cpython-37.pyc │ │ ├── soft_bce.cpython-38.pyc │ │ ├── soft_bce.cpython-39.pyc │ │ ├── soft_ce.cpython-37.pyc │ │ ├── soft_ce.cpython-38.pyc │ │ ├── soft_ce.cpython-39.pyc │ │ ├── tversky.cpython-37.pyc │ │ ├── tversky.cpython-38.pyc │ │ └── tversky.cpython-39.pyc │ ├── _functional.py │ ├── constants.py │ ├── dice.py │ ├── focal.py │ ├── jaccard.py │ ├── lovasz.py │ ├── mcc.py │ ├── soft_bce.py │ ├── soft_ce.py │ └── tversky.py ├── metrics │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-37.pyc │ │ ├── __init__.cpython-38.pyc │ │ ├── __init__.cpython-39.pyc │ │ ├── functional.cpython-37.pyc │ │ ├── functional.cpython-38.pyc │ │ └── functional.cpython-39.pyc │ └── functional.py └── utils │ ├── __init__.py │ ├── base.py │ ├── functional.py │ ├── losses.py │ ├── meter.py │ ├── metrics.py │ └── train.py ├── setup.cfg ├── src ├── mediar.egg-info │ ├── PKG-INFO │ ├── SOURCES.txt │ ├── dependency_links.txt │ ├── entry_points.txt │ ├── requires.txt │ └── top_level.txt └── mediar │ ├── __init__.py │ ├── __pycache__ │ ├── __init__.cpython-38.pyc │ ├── __init__.cpython-39.pyc │ ├── 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