├── .Rbuildignore ├── .gitignore ├── DESCRIPTION ├── NAMESPACE ├── R ├── alignment.R ├── analysis_functions.R ├── binary_processing.R ├── confidence_intervals.R ├── cpp11.R ├── input_eqtl.r ├── input_processing.R ├── on_load.R ├── partial_corrs.R └── wishart.R ├── README.Rmd ├── README.md ├── REFERENCE.md ├── UPDATES.md ├── man ├── meta.analyse.locus.Rd ├── process.eqtl.input.Rd ├── process.eqtl.input.preprocessed.Rd ├── process.eqtl.locus.Rd ├── process.input.Rd ├── process.locus.Rd ├── read.loci.Rd ├── run.bivar.Rd ├── run.multireg.Rd ├── run.pcor.Rd ├── run.univ.Rd ├── run.univ.bivar.Rd ├── set.chromosomes.Rd └── set.tissue.Rd ├── src ├── cpp11.cpp ├── global.h ├── load_ld.cpp ├── load_ld.h ├── load_ld.tpl.h ├── load_plink.cpp ├── load_plink.h └── utils.h ├── support_data └── blocks_s2500_m25_f1_w200.GRCh37_hg19.locfile └── vignettes ├── data ├── asthma.sumstats.txt ├── bmi.sumstats.txt ├── depression.sumstats.txt ├── diabetes.sumstats.txt ├── g1000_test.bed ├── g1000_test.bim ├── 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