├── .gitignore ├── README.md ├── examples ├── CTCF_convNet_example.ipynb └── demoData │ ├── .gitignore │ ├── CTCF_network.hd5 │ ├── CTCFbound_oneHot.npy │ └── README.txt ├── maxEnt ├── MEutils.py ├── __init__.py ├── sampleConstrainedME.py └── webLogo_wrapper.R └── supplementaryData ├── .gitignore └── XOR_network_data.tar.gz /.gitignore: -------------------------------------------------------------------------------- 1 | *.pyc 2 | examples/.gitignore 3 | scratch/ 4 | -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jssong-lab/maxEnt/HEAD/README.md -------------------------------------------------------------------------------- /examples/CTCF_convNet_example.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jssong-lab/maxEnt/HEAD/examples/CTCF_convNet_example.ipynb -------------------------------------------------------------------------------- /examples/demoData/.gitignore: -------------------------------------------------------------------------------- 1 | CTCFbound_oneHot_extra.npy 2 | -------------------------------------------------------------------------------- /examples/demoData/CTCF_network.hd5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jssong-lab/maxEnt/HEAD/examples/demoData/CTCF_network.hd5 -------------------------------------------------------------------------------- /examples/demoData/CTCFbound_oneHot.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jssong-lab/maxEnt/HEAD/examples/demoData/CTCFbound_oneHot.npy -------------------------------------------------------------------------------- /examples/demoData/README.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jssong-lab/maxEnt/HEAD/examples/demoData/README.txt -------------------------------------------------------------------------------- /maxEnt/MEutils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jssong-lab/maxEnt/HEAD/maxEnt/MEutils.py -------------------------------------------------------------------------------- /maxEnt/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /maxEnt/sampleConstrainedME.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jssong-lab/maxEnt/HEAD/maxEnt/sampleConstrainedME.py -------------------------------------------------------------------------------- /maxEnt/webLogo_wrapper.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jssong-lab/maxEnt/HEAD/maxEnt/webLogo_wrapper.R -------------------------------------------------------------------------------- /supplementaryData/.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jssong-lab/maxEnt/HEAD/supplementaryData/.gitignore -------------------------------------------------------------------------------- /supplementaryData/XOR_network_data.tar.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jssong-lab/maxEnt/HEAD/supplementaryData/XOR_network_data.tar.gz --------------------------------------------------------------------------------