├── .gitignore ├── LICENSE ├── Makefile ├── README.md ├── SeqPrep.c ├── Test ├── .gitignore ├── CLEAN.sh ├── README.md ├── RUNTEST.sh ├── SimTest │ ├── RUNTEST.sh │ ├── sens_vs_spec.py │ ├── simSeq10k_1.fq │ ├── simSeq10k_2.fq │ ├── simSeq_1.fq │ ├── simSeq_2.fq │ └── simseq_trimmed_error_check.py ├── data │ ├── multiplex_bad_contam_1.fq.gz │ └── multiplex_bad_contam_2.fq.gz └── seqlens.py ├── stdaln.c ├── stdaln.h ├── utils.c └── utils.h /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jstjohn/SeqPrep/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jstjohn/SeqPrep/HEAD/LICENSE -------------------------------------------------------------------------------- /Makefile: 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