├── MetPriCNet.sqlite ├── MetaboAnalystR_1.0.1.tar.gz ├── MetaboAnalystR_1.0.2.tar.gz ├── MetaboAnalystR_1.0.3.tar.gz ├── MetaboAnalystR_2.0.0.tar.gz ├── MetaboAnalystR_2.0.1.tar.gz ├── MetaboAnalystR_2_Supplementary_Data ├── BenchmarkTest.R ├── MetaboAnalystR_2_Rhistory.R ├── annotated_peaklist_manuscript.csv └── iHMP2_48_metaboanalyst_input.csv ├── MetaboAnalystR_2_Workflow_From_Raw_Spectra_to_Biological_Insights.pdf ├── README.md ├── Supplementary_Material ├── MetaboAnalystR - Supplementary Material_JC_2018_0424.docx ├── Rhistory_Batch.R ├── Rhistory_Flexibility.R ├── Rhistory_Original.R ├── Rhistory_Reproducibility.R ├── Rhistory_Scalibility.R ├── Rhistory_batch_original.R ├── batchoutput.R ├── lcms_netcdf.zip └── pilot_ms_netcdf.zip ├── _config.yml ├── compound_db.rds ├── currency.txt ├── docs └── metaboanalyst_logo.png ├── mixed_add_list.txt ├── neg_add_list.txt └── pos_add_list.txt /MetPriCNet.sqlite: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jsychong/MetaboAnalystR/HEAD/MetPriCNet.sqlite -------------------------------------------------------------------------------- /MetaboAnalystR_1.0.1.tar.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jsychong/MetaboAnalystR/HEAD/MetaboAnalystR_1.0.1.tar.gz -------------------------------------------------------------------------------- /MetaboAnalystR_1.0.2.tar.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jsychong/MetaboAnalystR/HEAD/MetaboAnalystR_1.0.2.tar.gz -------------------------------------------------------------------------------- /MetaboAnalystR_1.0.3.tar.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jsychong/MetaboAnalystR/HEAD/MetaboAnalystR_1.0.3.tar.gz -------------------------------------------------------------------------------- /MetaboAnalystR_2.0.0.tar.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jsychong/MetaboAnalystR/HEAD/MetaboAnalystR_2.0.0.tar.gz -------------------------------------------------------------------------------- /MetaboAnalystR_2.0.1.tar.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jsychong/MetaboAnalystR/HEAD/MetaboAnalystR_2.0.1.tar.gz -------------------------------------------------------------------------------- /MetaboAnalystR_2_Supplementary_Data/BenchmarkTest.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jsychong/MetaboAnalystR/HEAD/MetaboAnalystR_2_Supplementary_Data/BenchmarkTest.R -------------------------------------------------------------------------------- /MetaboAnalystR_2_Supplementary_Data/MetaboAnalystR_2_Rhistory.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jsychong/MetaboAnalystR/HEAD/MetaboAnalystR_2_Supplementary_Data/MetaboAnalystR_2_Rhistory.R -------------------------------------------------------------------------------- /MetaboAnalystR_2_Supplementary_Data/annotated_peaklist_manuscript.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jsychong/MetaboAnalystR/HEAD/MetaboAnalystR_2_Supplementary_Data/annotated_peaklist_manuscript.csv -------------------------------------------------------------------------------- /MetaboAnalystR_2_Supplementary_Data/iHMP2_48_metaboanalyst_input.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jsychong/MetaboAnalystR/HEAD/MetaboAnalystR_2_Supplementary_Data/iHMP2_48_metaboanalyst_input.csv -------------------------------------------------------------------------------- /MetaboAnalystR_2_Workflow_From_Raw_Spectra_to_Biological_Insights.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jsychong/MetaboAnalystR/HEAD/MetaboAnalystR_2_Workflow_From_Raw_Spectra_to_Biological_Insights.pdf -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jsychong/MetaboAnalystR/HEAD/README.md -------------------------------------------------------------------------------- /Supplementary_Material/MetaboAnalystR - Supplementary Material_JC_2018_0424.docx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jsychong/MetaboAnalystR/HEAD/Supplementary_Material/MetaboAnalystR - Supplementary Material_JC_2018_0424.docx -------------------------------------------------------------------------------- /Supplementary_Material/Rhistory_Batch.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jsychong/MetaboAnalystR/HEAD/Supplementary_Material/Rhistory_Batch.R -------------------------------------------------------------------------------- /Supplementary_Material/Rhistory_Flexibility.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jsychong/MetaboAnalystR/HEAD/Supplementary_Material/Rhistory_Flexibility.R -------------------------------------------------------------------------------- /Supplementary_Material/Rhistory_Original.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jsychong/MetaboAnalystR/HEAD/Supplementary_Material/Rhistory_Original.R -------------------------------------------------------------------------------- /Supplementary_Material/Rhistory_Reproducibility.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jsychong/MetaboAnalystR/HEAD/Supplementary_Material/Rhistory_Reproducibility.R -------------------------------------------------------------------------------- /Supplementary_Material/Rhistory_Scalibility.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jsychong/MetaboAnalystR/HEAD/Supplementary_Material/Rhistory_Scalibility.R -------------------------------------------------------------------------------- /Supplementary_Material/Rhistory_batch_original.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jsychong/MetaboAnalystR/HEAD/Supplementary_Material/Rhistory_batch_original.R -------------------------------------------------------------------------------- /Supplementary_Material/batchoutput.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jsychong/MetaboAnalystR/HEAD/Supplementary_Material/batchoutput.R -------------------------------------------------------------------------------- /Supplementary_Material/lcms_netcdf.zip: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jsychong/MetaboAnalystR/HEAD/Supplementary_Material/lcms_netcdf.zip -------------------------------------------------------------------------------- /Supplementary_Material/pilot_ms_netcdf.zip: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jsychong/MetaboAnalystR/HEAD/Supplementary_Material/pilot_ms_netcdf.zip -------------------------------------------------------------------------------- /_config.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jsychong/MetaboAnalystR/HEAD/_config.yml -------------------------------------------------------------------------------- /compound_db.rds: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jsychong/MetaboAnalystR/HEAD/compound_db.rds -------------------------------------------------------------------------------- /currency.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jsychong/MetaboAnalystR/HEAD/currency.txt -------------------------------------------------------------------------------- /docs/metaboanalyst_logo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jsychong/MetaboAnalystR/HEAD/docs/metaboanalyst_logo.png -------------------------------------------------------------------------------- /mixed_add_list.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jsychong/MetaboAnalystR/HEAD/mixed_add_list.txt -------------------------------------------------------------------------------- /neg_add_list.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jsychong/MetaboAnalystR/HEAD/neg_add_list.txt -------------------------------------------------------------------------------- /pos_add_list.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jsychong/MetaboAnalystR/HEAD/pos_add_list.txt --------------------------------------------------------------------------------