├── .github └── workflows │ └── rust.yml ├── Cargo.toml ├── LICENSE ├── README.md ├── etc └── GRCh38_notinalldifficultregions.bed.gz ├── src ├── calling_models.rs ├── classifier.rs ├── genotype.rs ├── haplotype_qc.rs ├── longshot_realign.rs ├── main.rs ├── parameters.rs ├── pileup_stats.rs ├── select_reads.rs ├── simulation.rs ├── somatic_call.rs └── utility.rs └── workflow ├── Snakefile ├── config.yaml └── rules ├── demo.smk └── hmftools.smk /.github/workflows/rust.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jts/smrest/HEAD/.github/workflows/rust.yml -------------------------------------------------------------------------------- /Cargo.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jts/smrest/HEAD/Cargo.toml -------------------------------------------------------------------------------- /LICENSE: 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