├── .gitignore ├── LICENSE ├── README.md ├── clonesig ├── __init__.py ├── data │ ├── README.md │ ├── curated_match_signature_cancertype_tcgawes_literature.csv │ ├── match_cancer_type_sig_v2.csv │ ├── match_cancer_type_sig_v3.csv │ ├── sigProfiler_SBS_signatures_2018_03_28.csv │ ├── sigProfiler_SBS_signatures_2019_05_22.csv │ ├── sigProfiler_exome_SBS_signatures.csv │ └── signatures_probabilities.txt ├── data_loader.py ├── estimator.py ├── evaluate.py ├── mixin_init_parameters.py └── run_clonesig.py ├── examples ├── example_data.csv ├── full_CloneSig_run_with_simulated_data.ipynb └── purity.txt └── setup.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/judithabk6/clonesig/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- 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