├── LICENSE
├── README.md
├── SS_dataset.py
├── TestSet_BeamSearch_Outputs
├── HRED_Ubuntu_Baseline_Exp1_BeamSearch_5_GeneratedTestSamples
├── HRED_Ubuntu_Baseline_Exp1_BeamSearch_5_GeneratedTestSamples_First.txt
├── VHRED_Ubuntu_Exp5_BeamSearch_5_GeneratedTestSamples_MeanRandom
├── VHRED_Ubuntu_Exp5_BeamSearch_5_GeneratedTestSamples_MeanRandom_First.txt
├── VHRED_Ubuntu_Exp7_BeamSearch_5_GeneratedTestSamples_MeanRandom
├── VHRED_Ubuntu_Exp7_BeamSearch_5_GeneratedTestSamples_MeanRandom_First.txt
├── VHRED_Ubuntu_Exp9_BeamSearch_5_GeneratedTestSamples_MeanRandom
└── VHRED_Ubuntu_Exp9_BeamSearch_5_GeneratedTestSamples_MeanRandom_First.txt
├── __init__.py
├── adam.py
├── convert-text2dict.py
├── data_iterator.py
├── dialog_encdec.py
├── model.py
├── numpy_compat.py
├── sample.py
├── search.py
├── state.py
├── tests
└── data
│ ├── MT_WordEmb.pkl
│ ├── ttest.dialogues.pkl
│ ├── ttest.semantic.pkl
│ ├── ttrain.dialogues.pkl
│ ├── ttrain.dict.pkl
│ ├── ttrain.semantic.pkl
│ ├── ttrain.txt
│ ├── ttrain.txt~
│ ├── tvalid.dialogues.pkl
│ ├── tvalid.semantic.pkl
│ ├── tvalid.txt
│ ├── tvalid_contexts.txt
│ ├── tvalid_contexts.txt~
│ ├── tvalid_potential_responses.txt
│ ├── tvalid_potential_responses.txt~
│ ├── tvalid_responses.txt
│ └── tvalid_responses.txt~
├── train.py
└── utils.py
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--------------------------------------------------------------------------------
/README.md:
--------------------------------------------------------------------------------
1 | ### Description
2 | This repository hosts the Latent Variable Hierarchical Recurrent Encoder-Decoder RNN model with Gaussian and piecewise constant latent variables for generative dialog modeling, as well as the HRED baseline model. These models were proposed in the paper "Piecewise Latent Variables for Neural Variational Text Processing" by Serban et al.
3 |
4 |
5 | ### Truncated BPTT
6 | All models are implemented using Truncated Backpropagation Through Time (Truncated BPTT).
7 | The truncated computation is carried out by splitting each document (dialogue) into shorter sequences (e.g. 80 tokens) and computing gradients for each sequence separately, such that the hidden state of the RNNs on each subsequence is initialized from the preceding sequence (i.e. the hidden states have been forward propagated through the previous states).
8 |
9 |
10 | ### Creating Datasets
11 | The script convert-text2dict.py can be used to generate model datasets based on text files with dialogues.
12 | It only requires that the document contains end-of-utterance tokens </s> which are used to construct the model graph, since the utterance encoder is only connected to the dialogue encoder at the end of each utterance.
13 |
14 | Prepare your dataset as a text file for with one document per line (e.g. one dialogue per line). The documents are assumed to be tokenized. If you have validation and test sets, they must satisfy the same requirements.
15 |
16 | Once you're ready, you can create the model dataset files by running:
17 |
18 | python convert-text2dict.py <training_file> --cutoff <vocabulary_size> Training
19 | python convert-text2dict.py <validation_file> --dict=Training.dict.pkl Validation
20 | python convert-text2dict.py <test_file> --dict=Training.dict.pkl <vocabulary_size> Test
21 |
22 | where <training_file>, <validation_file> and <test_file> are the training, validation and test files, and <vocabulary_size> is the number of tokens that you want to train on (all other tokens, but the most frequent <vocabulary_size> tokens, will be converted to <unk> symbols).
23 |
24 | NOTE: The script automatically adds the following special tokens specific to movie script dialogues:
25 | - end-of-utterance: </s>
26 | - end-of-dialogue: </d>
27 | - first speaker: <first_speaker>
28 | - second speaker: <second_speaker>
29 | - third speaker: <third_speaker>
30 | - minor speaker: <minor_speaker>
31 | - voice over: <voice_over>
32 | - off screen: <off_screen>
33 | - pause: <pause>
34 |
35 | If these do not exist in your dataset, you can safely ignore these. The model will learn to assign approximately zero probability mass to them.
36 |
37 |
38 | ### Model Training
39 | If you have Theano with GPU installed (bleeding edge version), you can train the model as follows:
40 | 1) Clone the Github repository
41 | 2) Unpack your dataset files into "Data" directory.
42 | 3) Create a new prototype inside state.py (look at prototype_test_variational for an example)
43 | 4) From the terminal, cd into the code directory and run:
44 |
45 | THEANO_FLAGS=mode=FAST_RUN,device=cuda,floatX=float32 python train.py --prototype > Model_Output.txt
46 |
47 | where <prototype_name> is a state (model configuration/architecture) defined inside state.py.
48 | Training a model to convergence on a modern GPU on the Ubuntu Dialogue Corpus with 46 million tokens takes about 2 weeks. If your GPU runs out of memory, you can adjust the batch size (bs) parameter in the model state, but training will be slower. You can also play around with the other parameters inside state.py.
49 |
50 |
51 | ### Model Sampling & Testing
52 | To generate model responses using beam search run:
53 |
54 | THEANO_FLAGS=mode=FAST_RUN,floatX=float32,device=cuda python sample.py --beam_search --n-samples= --ignore-unk --verbose
55 |
56 | where <model_name> is the name automatically generated during training, <contexts> is a file containing the dialogue contexts with one dialogue per line, and <beams> is the size of the beam search. The results are saved in the file <model_outputs>.
57 |
58 |
59 | ### Citation
60 | If you build on this work, we'd really appreciate it if you could cite our papers:
61 |
62 | Piecewise Latent Variables for Neural Variational Text Processing. Iulian V. Serban, Alexander G. Ororbia II, Joelle Pineau, Aaron Courville, Yoshua Bengio. 2017. https://arxiv.org/abs/1612.00377
63 |
64 | A Hierarchical Latent Variable Encoder-Decoder Model for Generating Dialogues. Iulian V. Serban, Alessandro Sordoni, Ryan Lowe, Laurent Charlin, Joelle Pineau, Aaron Courville, Yoshua Bengio. 2016. http://arxiv.org/abs/1605.06069
65 |
66 | Building End-To-End Dialogue Systems Using Generative Hierarchical Neural Network Models. Iulian V. Serban, Alessandro Sordoni, Yoshua Bengio, Aaron Courville, Joelle Pineau. 2016. AAAI. http://arxiv.org/abs/1507.04808.
67 |
68 |
69 | ### Reproducing Results in "Piecewise Latent Variables for Neural Variational Text Processing"
70 | The results reported in the paper "Piecewise Latent Variables for Neural Variational Text Processing" by Serban et al. are based on the following model states found inside state.py:
71 |
72 | prototype_ubuntu_GaussPiecewise_NormOp_VHRED_Baseline_Exp1 (HRED baseline)
73 | prototype_ubuntu_GaussPiecewise_NormOp_VHRED_Exp5 (P-VHRED)
74 | prototype_ubuntu_GaussPiecewise_NormOp_VHRED_Exp7 (G-VHRED)
75 | prototype_ubuntu_GaussPiecewise_NormOp_VHRED_Exp9 (H-VHRED)
76 |
77 | To reproduce these results from scratch, you must follow these steps:
78 |
79 | 1) Download and unpack the preprocessed Ubuntu dataset available from http://www.iulianserban.com/Files/UbuntuDialogueCorpus.zip.
80 |
81 | 2) a) Clone this Github repository locally on a machine. Use a machine with a fast GPU with large memory (preferably 12GB).
82 |
83 | b) Reconfigure the model states above in state.py appropriately:
84 | 1) Change 'train\_dialogues', 'valid\_dialogues', 'test\_dialogues' to the path for the Ubuntu dataset files.
85 | 2) Change 'dictionary' to the path for the dictionary.
86 |
87 | c) Train up the model. This takes about 2 weeks time!
88 | For example, for "prototype\_ubuntu\_GaussPiecewise\_NormOp\_VHRED\_Exp9" run:
89 |
90 | THEANO_FLAGS=mode=FAST_RUN,device=cuda,floatX=float32 python train.py --prototype prototype_ubuntu_GaussPiecewise_NormOp_VHRED_Exp9 &> Model_Output.txt
91 |
92 | The model will be saved inside the directory Output/.
93 | If the machine runs out of GPU memory, reduce the batch size (bs) and maximum number of gradient steps (max_grad_steps) in the model state.
94 |
95 | d) Generate outputs using beam search with size 5 on the Ubuntu test set.
96 | To do this, run:
97 |
98 | THEANO_FLAGS=mode=FAST_RUN,device=cuda,floatX=float32 python sample.py --beam_search --n-samples=5 --n-turns=1 --verbose
99 |
100 | where <model_path_prefix> is the path to the saved model parameters excluding the postfix (e.g. Output/1482712210.89_UbuntuModel),
101 | <text_set_contexts> is the path to the Ubuntu test set contexts and <output_file> is where the beam outputs will be stored.
102 |
103 | e) Compute performance using activity- and entity-based metrics.
104 | Follow the instructions given here: https://github.com/julianser/Ubuntu-Multiresolution-Tools.
105 |
106 |
107 | Following all steps to reproduce the results requires a few weeks time and, depending on your setup, may also require changing your Theano configuraiton and the state file. Therefore, we have also made available the trained models and the generated model responses on the test set.
108 |
109 | You can find the trained models here: https://drive.google.com/open?id=0B06gib_77EnxaDg2VkV1N1huUjg.
110 |
111 | You can find the model responses generated using beam search in this repository inside "TestSet_BeamSearch_Outputs/".
112 |
113 |
114 | ### Datasets
115 | The pre-processed Ubuntu Dialogue Corpus and model responses used are available at: http://www.iulianserban.com/Files/UbuntuDialogueCorpus.zip.
116 |
117 | The original Ubuntu Dialogue Corpus as released by Lowe et al. (2015) can be found here: http://cs.mcgill.ca/~jpineau/datasets/ubuntu-corpus-1.0/
118 |
119 | Unfortunately due to Twitter's terms of service we are not allowed to distribute Twitter content. Therefore we can only make available the tweet IDs, which can then be used with the Twitter API to build a similar dataset. The tweet IDs and model test responses can be found here: http://www.iulianserban.com/Files/TwitterDialogueCorpus.zip.
120 |
121 | ### References
122 |
123 | Piecewise Latent Variables for Neural Variational Text Processing. Iulian V. Serban, Alexander G. Ororbia II, Joelle Pineau, Aaron Courville, Yoshua Bengio. 2017. https://arxiv.org/abs/1612.00377
124 |
125 | A Hierarchical Latent Variable Encoder-Decoder Model for Generating Dialogues. Iulian Vlad Serban, Alessandro Sordoni, Ryan Lowe, Laurent Charlin, Joelle Pineau, Aaron Courville, Yoshua Bengio. 2016a. http://arxiv.org/abs/1605.06069
126 |
127 | Multiresolution Recurrent Neural Networks: An Application to Dialogue Response Generation. Iulian Vlad Serban, Tim Klinger, Gerald Tesauro, Kartik Talamadupula, Bowen Zhou, Yoshua Bengio, Aaron Courville. 2016b. http://arxiv.org/abs/1606.00776.
128 |
129 | Building End-To-End Dialogue Systems Using Generative Hierarchical Neural Network Models. Iulian V. Serban, Alessandro Sordoni, Yoshua Bengio, Aaron Courville, Joelle Pineau. 2016c. AAAI. http://arxiv.org/abs/1507.04808.
130 |
131 | Training End-to-End Dialogue Systems with the Ubuntu Dialogue Corpus. Ryan Lowe, Nissan Pow, Iulian V. Serban, Laurent Charlin, Chia-Wei Liu, Joelle Pineau. 2017. Dialogue & Discourse Journal. http://www.cs.mcgill.ca/~jpineau/files/lowe-dialoguediscourse-2017.pdf
132 |
133 | The Ubuntu Dialogue Corpus: A Large Dataset for Research in Unstructured Multi-Turn Dialogue Systems. Ryan Lowe, Nissan Pow, Iulian Serban, Joelle Pineau. 2015. SIGDIAL. http://arxiv.org/abs/1506.08909.
134 |
--------------------------------------------------------------------------------
/SS_dataset.py:
--------------------------------------------------------------------------------
1 | import numpy
2 | import os, gc
3 | import cPickle
4 | import copy
5 | import logging
6 |
7 | import threading
8 | import Queue
9 |
10 | import collections
11 |
12 | logger = logging.getLogger(__name__)
13 |
14 | class SSFetcher(threading.Thread):
15 | def __init__(self, parent, init_offset=0, init_reshuffle_count=1, eos_sym=-1,
16 | skip_utterance=False, skip_utterance_predict_both=False):
17 | threading.Thread.__init__(self)
18 | self.parent = parent
19 | self.rng = numpy.random.RandomState(self.parent.seed)
20 | self.indexes = numpy.arange(parent.data_len)
21 |
22 | self.init_offset = init_offset
23 | self.init_reshuffle_count = init_reshuffle_count
24 | self.offset = 0
25 | self.reshuffle_count = 0
26 |
27 | self.eos_sym = eos_sym
28 | self.skip_utterance = skip_utterance
29 | self.skip_utterance_predict_both = skip_utterance_predict_both
30 |
31 | def apply_reshuffle(self):
32 | self.rng.shuffle(self.indexes)
33 | self.offset = 0
34 | self.reshuffle_count += 1
35 |
36 | def run(self):
37 | diter = self.parent
38 | # Initialize to previously set reshuffles and offset position
39 | while (self.reshuffle_count < self.init_reshuffle_count):
40 | self.apply_reshuffle()
41 |
42 | self.offset = self.init_offset
43 |
44 | while not diter.exit_flag:
45 | last_batch = False
46 | dialogues = []
47 |
48 | while len(dialogues) < diter.batch_size:
49 | if self.offset == diter.data_len:
50 | if not diter.use_infinite_loop:
51 | last_batch = True
52 | break
53 | else:
54 | # Infinite loop here, we reshuffle the indexes
55 | # and reset the self.offset
56 | self.apply_reshuffle()
57 |
58 | index = self.indexes[self.offset]
59 | s = diter.data[index]
60 |
61 | # Flatten if this is a list of lists
62 | if len(s) > 0:
63 | if isinstance(s[0], list):
64 | s = [item for sublist in s for item in sublist]
65 |
66 | # Standard dialogue preprocessing
67 | if not self.skip_utterance:
68 | # Append only if it is shorter than max_len
69 | if diter.max_len == -1 or len(s) <= diter.max_len:
70 | dialogues.append([s, self.offset, self.reshuffle_count])
71 |
72 | # Skip-utterance preprocessing
73 | else:
74 | s = copy.deepcopy(s)
75 | eos_indices = numpy.where(numpy.asarray(s) == self.eos_sym)[0]
76 |
77 | if not s[0] == self.eos_sym:
78 | eos_indices = numpy.insert(eos_indices, 0, [self.eos_sym])
79 | if not s[-1] == self.eos_sym:
80 | eos_indices = numpy.append(eos_indices, [self.eos_sym])
81 | if len(eos_indices) > 2:
82 | # Compute forward and backward targets
83 | first_utterance_index = self.rng.randint(0, len(eos_indices)-2)
84 | s_forward = s[eos_indices[first_utterance_index]:eos_indices[first_utterance_index+2]+1]
85 |
86 | s_backward_a = s[eos_indices[first_utterance_index+1]:eos_indices[first_utterance_index+2]]
87 | s_backward_b = s[eos_indices[first_utterance_index]:eos_indices[first_utterance_index+1]+1]
88 |
89 | # Sometimes an end-of-utterance token is missing at the end.
90 | # Therefore, we need to insert it here.
91 | if s_backward_a[-1] == self.eos_sym or s_backward_b[0] == self.eos_sym:
92 | s_backward = s_backward_a + s_backward_b
93 | else:
94 | s_backward = s_backward_a + [self.eos_sym] + s_backward_b
95 |
96 | else:
97 | s_forward = [self.eos_sym]
98 | s_backward = [self.eos_sym]
99 |
100 | if self.skip_utterance_predict_both:
101 | # Append only if it is shorter than max_len
102 | if diter.max_len == -1 or len(s_forward) <= diter.max_len:
103 | dialogues.append([s_forward, self.offset, self.reshuffle_count])
104 | if diter.max_len == -1 or len(s_backward) <= diter.max_len:
105 | dialogues.append([s_backward, self.offset, self.reshuffle_count])
106 | else:
107 | # Append only if it is shorter than max_len
108 | if self.rng.randint(0, 2) == 0:
109 | if diter.max_len == -1 or len(s_forward) <= diter.max_len:
110 | dialogues.append([s_forward, self.offset, self.reshuffle_count])
111 | else:
112 | if diter.max_len == -1 or len(s_backward) <= diter.max_len:
113 | dialogues.append([s_backward, self.offset, self.reshuffle_count])
114 |
115 | self.offset += 1
116 |
117 |
118 | if len(dialogues):
119 | diter.queue.put(dialogues)
120 |
121 | if last_batch:
122 | diter.queue.put(None)
123 | return
124 |
125 | class SSIterator(object):
126 | def __init__(self,
127 | dialogue_file,
128 | batch_size,
129 | seed,
130 | max_len=-1,
131 | use_infinite_loop=True,
132 | init_offset=0,
133 | init_reshuffle_count=1,
134 | eos_sym=-1,
135 | skip_utterance=False,
136 | skip_utterance_predict_both=False):
137 |
138 | self.dialogue_file = dialogue_file
139 | self.batch_size = batch_size
140 | self.init_offset = init_offset
141 | self.init_reshuffle_count = init_reshuffle_count
142 | self.eos_sym = eos_sym
143 | self.skip_utterance = skip_utterance
144 | self.skip_utterance_predict_both = skip_utterance_predict_both
145 |
146 | args = locals()
147 | args.pop("self")
148 | self.__dict__.update(args)
149 | self.load_files()
150 | self.exit_flag = False
151 |
152 | def load_files(self):
153 | self.data = cPickle.load(open(self.dialogue_file, 'r'))
154 | self.data_len = len(self.data)
155 | logger.debug('Data len is %d' % self.data_len)
156 |
157 | def start(self):
158 | self.exit_flag = False
159 | self.queue = Queue.Queue(maxsize=1000)
160 | self.gather = SSFetcher(self, self.init_offset, self.init_reshuffle_count,
161 | self.eos_sym, self.skip_utterance, self.skip_utterance_predict_both)
162 | self.gather.daemon = True
163 | self.gather.start()
164 |
165 | def __del__(self):
166 | if hasattr(self, 'gather'):
167 | self.gather.exitFlag = True
168 | self.gather.join()
169 |
170 | def __iter__(self):
171 | return self
172 |
173 | def next(self):
174 | if self.exit_flag:
175 | return None
176 |
177 | batch = self.queue.get()
178 | if not batch:
179 | self.exit_flag = True
180 | return batch
181 |
182 |
183 |
--------------------------------------------------------------------------------
/__init__.py:
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https://raw.githubusercontent.com/julianser/hred-latent-piecewise/068478dd5b2aa9928168a62a479773e219505319/__init__.py
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/adam.py:
--------------------------------------------------------------------------------
1 | """
2 | The MIT License (MIT)
3 |
4 | Copyright (c) 2015 Alec Radford
5 |
6 | Permission is hereby granted, free of charge, to any person obtaining a copy
7 | of this software and associated documentation files (the "Software"), to deal
8 | in the Software without restriction, including without limitation the rights
9 | to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
10 | copies of the Software, and to permit persons to whom the Software is
11 | furnished to do so, subject to the following conditions:
12 |
13 | The above copyright notice and this permission notice shall be included in all
14 | copies or substantial portions of the Software.
15 |
16 | THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
17 | IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
18 | FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
19 | AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
20 | LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
21 | OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
22 | SOFTWARE.
23 | """
24 |
25 | import theano
26 | import theano.tensor as T
27 |
28 | def sharedX(value, name=None, borrow=False, dtype=None):
29 | if dtype is None:
30 | dtype = theano.config.floatX
31 | return theano.shared(theano._asarray(value, dtype=dtype),
32 | name=name,
33 | borrow=borrow)
34 |
35 | def Adam(grads, lr=0.0002, b1=0.1, b2=0.001, e=1e-8):
36 | updates = []
37 | varlist = []
38 | i = sharedX(0.)
39 | i_t = i + 1.
40 | fix1 = 1. - (1. - b1)**i_t
41 | fix2 = 1. - (1. - b2)**i_t
42 | lr_t = lr * (T.sqrt(fix2) / fix1)
43 | for p, g in grads.items():
44 | m = sharedX(p.get_value() * 0., name=p.name + '_adam_optimizer_m')
45 | v = sharedX(p.get_value() * 0., name=p.name + '_adam_optimizer_v')
46 | m_t = (b1 * g) + ((1. - b1) * m)
47 | v_t = (b2 * T.sqr(g)) + ((1. - b2) * v)
48 | g_t = m_t / (T.sqrt(v_t) + e)
49 | p_t = p - (lr_t * g_t)
50 |
51 | updates.append((m, m_t))
52 | updates.append((v, v_t))
53 | updates.append((p, p_t))
54 |
55 | varlist.append(m)
56 | varlist.append(v)
57 |
58 | updates.append((i, i_t))
59 | return updates, varlist
60 |
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/convert-text2dict.py:
--------------------------------------------------------------------------------
1 | """
2 | Takes as input a dialogue file and creates a processed version of it.
3 | If given an external dictionary, the input dialogue file will be converted
4 | using that input dictionary.
5 |
6 | @author Alessandro Sordoni, Iulian Vlad Serban
7 | """
8 |
9 | import collections
10 | import numpy
11 | import operator
12 | import os
13 | import sys
14 | import logging
15 | import cPickle
16 |
17 | from collections import Counter
18 |
19 | logging.basicConfig(level=logging.INFO)
20 | logger = logging.getLogger('text2dict')
21 |
22 | def safe_pickle(obj, filename):
23 | if os.path.isfile(filename):
24 | logger.info("Overwriting %s." % filename)
25 | else:
26 | logger.info("Saving to %s." % filename)
27 |
28 | with open(filename, 'wb') as f:
29 | cPickle.dump(obj, f, protocol=cPickle.HIGHEST_PROTOCOL)
30 |
31 | import argparse
32 | parser = argparse.ArgumentParser()
33 | parser.add_argument("input", type=str, help="Dialogue file; assumed shuffled with one document (e.g. one movie dialogue, or one Twitter conversation or one Ubuntu conversation) per line")
34 | parser.add_argument("--cutoff", type=int, default=-1, help="Vocabulary cutoff (optional)")
35 | parser.add_argument("--dict", type=str, default="", help="External dictionary (pkl file)")
36 | parser.add_argument("output", type=str, help="Prefix of the pickle binarized dialogue corpus")
37 | args = parser.parse_args()
38 |
39 | if not os.path.isfile(args.input):
40 | raise Exception("Input file not found!")
41 |
42 | unk = ""
43 |
44 | ###############################
45 | # Part I: Create the dictionary
46 | ###############################
47 | if args.dict != "":
48 | # Load external dictionary
49 | assert os.path.isfile(args.dict)
50 | vocab = dict([(x[0], x[1]) for x in cPickle.load(open(args.dict, "r"))])
51 |
52 | # Check consistency
53 | assert '' in vocab
54 | assert '' in vocab
55 | assert '' in vocab
56 |
57 | # Also check special tags, which must exist in the Movie-Scriptolog dataset
58 | assert '' in vocab
59 | assert '' in vocab
60 | assert '' in vocab
61 | assert '' in vocab
62 | assert '' in vocab
63 | assert '' in vocab
64 | assert '' in vocab
65 |
66 | else:
67 | word_counter = Counter()
68 |
69 |
70 | for line in open(args.input, 'r'):
71 | line_words = line.strip().split()
72 | if line_words[len(line_words)-1] != '':
73 | line_words.append('')
74 |
75 | s = [x for x in line_words]
76 | word_counter.update(s)
77 |
78 | total_freq = sum(word_counter.values())
79 | logger.info("Total word frequency in dictionary %d " % total_freq)
80 |
81 | if args.cutoff != -1:
82 | logger.info("Cutoff %d" % args.cutoff)
83 | vocab_count = word_counter.most_common(args.cutoff)
84 | else:
85 | vocab_count = word_counter.most_common()
86 |
87 | # Add special tokens to the vocabulary
88 | vocab = {'': 0, '': 1, '': 2, '': 3, \
89 | '': 4, '': 5, '': 6, \
90 | '': 7, '': 8, '': 9}
91 |
92 | # Add other tokens to vocabulary in the order of their frequency
93 | i = 10
94 | for (word, count) in vocab_count:
95 | if not word in vocab:
96 | vocab[word] = i
97 | i += 1
98 |
99 | logger.info("Vocab size %d" % len(vocab))
100 |
101 | #################################
102 | # Part II: Binarize the dialogues
103 | #################################
104 |
105 | # Everything is loaded into memory for the moment
106 | binarized_corpus = []
107 | # Some statistics
108 | unknowns = 0.
109 | num_terms = 0.
110 | freqs = collections.defaultdict(lambda: 0)
111 |
112 | # counts the number of dialogues each unique word exists in; also known as document frequency
113 | df = collections.defaultdict(lambda: 0)
114 |
115 | for line, dialogue in enumerate(open(args.input, 'r')):
116 | dialogue_words = dialogue.strip().split()
117 | if dialogue_words[len(dialogue_words)-1] != '':
118 | dialogue_words.append('')
119 |
120 | # Convert words to token ids and compute some statistics
121 | dialogue_word_ids = []
122 | for word in dialogue_words:
123 | word_id = vocab.get(word, 0)
124 | dialogue_word_ids.append(word_id)
125 | unknowns += 1 * (word_id == 0)
126 | freqs[word_id] += 1
127 |
128 | num_terms += len(dialogue_words)
129 |
130 | # Compute document frequency statistics
131 | unique_word_indices = set(dialogue_word_ids)
132 | for word_id in unique_word_indices:
133 | df[word_id] += 1
134 |
135 | # Add dialogue to corpus
136 | binarized_corpus.append(dialogue_word_ids)
137 |
138 | safe_pickle(binarized_corpus, args.output + ".dialogues.pkl")
139 |
140 | if args.dict == "":
141 | safe_pickle([(word, word_id, freqs[word_id], df[word_id]) for word, word_id in vocab.items()], args.output + ".dict.pkl")
142 |
143 | logger.info("Number of unknowns %d" % unknowns)
144 | logger.info("Number of terms %d" % num_terms)
145 | logger.info("Mean document length %f" % float(sum(map(len, binarized_corpus))/len(binarized_corpus)))
146 | logger.info("Writing training %d dialogues (%d left out)" % (len(binarized_corpus), line + 1 - len(binarized_corpus)))
147 |
--------------------------------------------------------------------------------
/data_iterator.py:
--------------------------------------------------------------------------------
1 | import numpy as np
2 | import theano
3 | import theano.tensor as T
4 |
5 | import sys, getopt
6 | import logging
7 |
8 | from state import *
9 | from utils import *
10 | from SS_dataset import *
11 |
12 | import itertools
13 | import sys
14 | import pickle
15 | import random
16 | import datetime
17 | import math
18 | import copy
19 |
20 | logger = logging.getLogger(__name__)
21 |
22 |
23 | def add_random_variables_to_batch(state, rng, batch, prev_batch, evaluate_mode):
24 | """
25 | This is a helper function, which adds random variables to a batch.
26 | We do it this way, because we want to avoid Theano's random sampling both to speed up and to avoid
27 | known Theano issues with sampling inside scan loops.
28 |
29 | The random variable 'ran_var_gaussian_constutterance' is sampled from a standard Gaussian distribution,
30 | which remains constant during each utterance (i.e. between a pair of end-of-utterance tokens).
31 |
32 | The random variable 'ran_var_uniform_constutterance' is sampled from a uniform distribution [0, 1],
33 | which remains constant during each utterance (i.e. between a pair of end-of-utterance tokens).
34 |
35 | When not in evaluate mode, the random vector 'ran_decoder_drop_mask' is also sampled.
36 | This variable represents the input tokens which are replaced by unk when given to
37 | the decoder RNN. It is required for the noise addition trick used by Bowman et al. (2015).
38 | """
39 |
40 | # If none return none
41 | if not batch:
42 | return batch
43 |
44 | # Variables to store random vector sampled at the beginning of each utterance
45 | Ran_Var_Gaussian_ConstUtterance = numpy.zeros((batch['x'].shape[0], batch['x'].shape[1], state['latent_gaussian_per_utterance_dim']), dtype='float32')
46 | Ran_Var_Uniform_ConstUtterance = numpy.zeros((batch['x'].shape[0], batch['x'].shape[1], state['latent_piecewise_per_utterance_dim']), dtype='float32')
47 |
48 |
49 | # Go through each sample, find end-of-utterance indices and sample random variables
50 | for idx in xrange(batch['x'].shape[1]):
51 | # Find end-of-utterance indices
52 | eos_indices = numpy.where(batch['x'][:, idx] == state['eos_sym'])[0].tolist()
53 |
54 | # Make sure we also sample at the beginning of the utterance, and that we stop appropriately at the end
55 | if len(eos_indices) > 0:
56 | if not eos_indices[0] == 0:
57 | eos_indices = [0] + eos_indices
58 | if not eos_indices[-1] == batch['x'].shape[0]:
59 | eos_indices = eos_indices + [batch['x'].shape[0]]
60 | else:
61 | eos_indices = [0] + [batch['x'].shape[0]]
62 |
63 | # Sample random variables using NumPy
64 | ran_gaussian_vectors = rng.normal(loc=0, scale=1, size=(len(eos_indices), state['latent_gaussian_per_utterance_dim']))
65 | ran_uniform_vectors = rng.uniform(low=0.0, high=1.0, size=(len(eos_indices), state['latent_piecewise_per_utterance_dim']))
66 |
67 | for i in range(len(eos_indices)-1):
68 | for j in range(eos_indices[i], eos_indices[i+1]):
69 | Ran_Var_Gaussian_ConstUtterance[j, idx, :] = ran_gaussian_vectors[i, :]
70 | Ran_Var_Uniform_ConstUtterance[j, idx, :] = ran_uniform_vectors[i, :]
71 |
72 | # If a previous batch is given, and the last utterance in the previous batch
73 | # overlaps with the first utterance in the current batch, then we need to copy over
74 | # the random variables from the last utterance in the last batch to remain consistent.
75 | if prev_batch:
76 | if ('x_reset' in prev_batch) and (not numpy.sum(numpy.abs(prev_batch['x_reset'])) < 1) \
77 | and (('ran_var_gaussian_constutterance' in prev_batch) or ('ran_var_uniform_constutterance' in prev_batch)):
78 | prev_ran_gaussian_vector = prev_batch['ran_var_gaussian_constutterance'][-1,idx,:]
79 | prev_ran_uniform_vector = prev_batch['ran_var_uniform_constutterance'][-1,idx,:]
80 | if len(eos_indices) > 1:
81 | for j in range(0, eos_indices[1]):
82 | Ran_Var_Gaussian_ConstUtterance[j, idx, :] = prev_ran_gaussian_vector
83 | Ran_Var_Uniform_ConstUtterance[j, idx, :] = prev_ran_uniform_vector
84 | else:
85 | for j in range(0, batch['x'].shape[0]):
86 | Ran_Var_Gaussian_ConstUtterance[j, idx, :] = prev_ran_gaussian_vector
87 | Ran_Var_Uniform_ConstUtterance[j, idx, :] = prev_ran_uniform_vector
88 |
89 | # Add new random Gaussian variable to batch
90 | batch['ran_var_gaussian_constutterance'] = Ran_Var_Gaussian_ConstUtterance
91 | batch['ran_var_uniform_constutterance'] = Ran_Var_Uniform_ConstUtterance
92 |
93 | # Create word drop mask based on 'decoder_drop_previous_input_tokens_rate' option:
94 | if evaluate_mode:
95 | batch['ran_decoder_drop_mask'] = numpy.ones((batch['x'].shape[0], batch['x'].shape[1]), dtype='float32')
96 | else:
97 | if state.get('decoder_drop_previous_input_tokens', False):
98 | ran_drop = rng.uniform(size=(batch['x'].shape[0], batch['x'].shape[1]))
99 | batch['ran_decoder_drop_mask'] = (ran_drop <= state['decoder_drop_previous_input_tokens_rate']).astype('float32')
100 | else:
101 | batch['ran_decoder_drop_mask'] = numpy.ones((batch['x'].shape[0], batch['x'].shape[1]), dtype='float32')
102 |
103 |
104 | return batch
105 |
106 |
107 | def create_padded_batch(state, rng, x, force_end_of_utterance_token = False):
108 | # If flag 'do_generate_first_utterance' is off, then zero out the mask for the first utterance.
109 | do_generate_first_utterance = True
110 | if 'do_generate_first_utterance' in state:
111 | if state['do_generate_first_utterance'] == False:
112 | do_generate_first_utterance = False
113 |
114 | # Skip utterance model
115 | if state.get('skip_utterance', False):
116 | do_generate_first_utterance = False
117 |
118 | # x = copy.deepcopy(x)
119 | # for idx in xrange(len(x[0])):
120 | # eos_indices = numpy.where(numpy.asarray(x[0][idx]) == state['eos_sym'])[0]
121 | # if not x[0][idx][0] == state['eos_sym']:
122 | # eos_indices = numpy.insert(eos_indices, 0, state['eos_sym'])
123 | # if not x[0][idx][-1] == state['eos_sym']:
124 | # eos_indices = numpy.append(eos_indices, state['eos_sym'])
125 | #
126 | # if len(eos_indices) > 2:
127 | # first_utterance_index = rng.randint(0, len(eos_indices)-2)
128 | #
129 | # # Predict next or previous utterance
130 | # if state.get('skip_utterance_predict_both', False):
131 | # if rng.randint(0, 2) == 0:
132 | # x[0][idx] = x[0][idx][eos_indices[first_utterance_index]:eos_indices[first_utterance_index+2]+1]
133 | # else:
134 | # x[0][idx] = x[0][idx][eos_indices[first_utterance_index+1]:eos_indices[first_utterance_index+2]] + x[0][idx][eos_indices[first_utterance_index]:eos_indices[first_utterance_index+1]+1]
135 | # else:
136 | #
137 | # else:
138 | # x[0][idx] = [state['eos_sym']]
139 |
140 |
141 | # Find max length in batch
142 | mx = 0
143 | for idx in xrange(len(x[0])):
144 | mx = max(mx, len(x[0][idx]))
145 |
146 | # Take into account that sometimes we need to add the end-of-utterance symbol at the start
147 | mx += 1
148 |
149 | n = state['bs']
150 |
151 | X = numpy.zeros((mx, n), dtype='int32')
152 | Xmask = numpy.zeros((mx, n), dtype='float32')
153 |
154 | # Variable to store each utterance in reverse form (for bidirectional RNNs)
155 | X_reversed = numpy.zeros((mx, n), dtype='int32')
156 |
157 | # Fill X and Xmask.
158 | # Keep track of number of predictions and maximum dialogue length.
159 | num_preds = 0
160 | max_length = 0
161 | for idx in xrange(len(x[0])):
162 | # Insert sequence idx in a column of matrix X
163 | dialogue_length = len(x[0][idx])
164 |
165 | # Fiddle-it if it is too long ..
166 | if mx < dialogue_length:
167 | continue
168 |
169 | # Make sure end-of-utterance symbol is at beginning of dialogue.
170 | # This will force model to generate first utterance too
171 | if not x[0][idx][0] == state['eos_sym']:
172 | X[:dialogue_length+1, idx] = [state['eos_sym']] + x[0][idx][:dialogue_length]
173 | dialogue_length = dialogue_length + 1
174 | else:
175 | X[:dialogue_length, idx] = x[0][idx][:dialogue_length]
176 |
177 | # Keep track of longest dialogue
178 | max_length = max(max_length, dialogue_length)
179 |
180 | # Set the number of predictions == sum(Xmask), for cost purposes, minus one (to exclude first eos symbol)
181 | num_preds += dialogue_length - 1
182 |
183 | # Mark the end of phrase
184 | if len(x[0][idx]) < mx:
185 | if force_end_of_utterance_token:
186 | X[dialogue_length:, idx] = state['eos_sym']
187 |
188 | # Initialize Xmask column with ones in all positions that
189 | # were just set in X (except for first eos symbol, because we are not evaluating this).
190 | # Note: if we need mask to depend on tokens inside X, then we need to
191 | # create a corresponding mask for X_reversed and send it further in the model
192 | Xmask[0:dialogue_length, idx] = 1.
193 |
194 | # Reverse all utterances
195 | # TODO: For backward compatibility. This should be removed in future versions
196 | # i.e. move all the x_reversed computations to the model itself.
197 | eos_indices = numpy.where(X[:, idx] == state['eos_sym'])[0]
198 | X_reversed[:, idx] = X[:, idx]
199 | prev_eos_index = -1
200 | for eos_index in eos_indices:
201 | X_reversed[(prev_eos_index+1):eos_index, idx] = (X_reversed[(prev_eos_index+1):eos_index, idx])[::-1]
202 | prev_eos_index = eos_index
203 | if prev_eos_index > dialogue_length:
204 | break
205 |
206 |
207 |
208 | if not do_generate_first_utterance:
209 | eos_index_to_start_cost_from = eos_indices[0]
210 | if (eos_index_to_start_cost_from == 0) and (len(eos_indices) > 1):
211 | eos_index_to_start_cost_from = eos_indices[1]
212 | Xmask[0:eos_index_to_start_cost_from+1, idx] = 0.
213 |
214 | if np.sum(Xmask[:, idx]) < 2.0:
215 | Xmask[:, idx] = 0.
216 |
217 | if do_generate_first_utterance:
218 | assert num_preds == numpy.sum(Xmask) - numpy.sum(Xmask[0, :])
219 |
220 | batch = {'x': X, \
221 | 'x_reversed': X_reversed, \
222 | 'x_mask': Xmask, \
223 | 'num_preds': num_preds, \
224 | 'num_dialogues': len(x[0]), \
225 | 'max_length': max_length \
226 | }
227 |
228 | return batch
229 |
230 | class Iterator(SSIterator):
231 | def __init__(self, dialogue_file, batch_size, **kwargs):
232 | self.state = kwargs.pop('state', None)
233 | self.k_batches = kwargs.pop('sort_k_batches', 20)
234 |
235 | if ('skip_utterance' in self.state) and ('do_generate_first_utterance' in self.state):
236 | if self.state['skip_utterance']:
237 | assert not self.state.get('do_generate_first_utterance', False)
238 |
239 | # Store whether the iterator operates in evaluate mode or not
240 | self.evaluate_mode = kwargs.pop('evaluate_mode', False)
241 | print 'Data Iterator Evaluate Mode: ', self.evaluate_mode
242 |
243 | if self.evaluate_mode:
244 | SSIterator.__init__(self, dialogue_file, batch_size, \
245 | seed=kwargs.pop('seed', 1234), \
246 | max_len=kwargs.pop('max_len', -1), \
247 | use_infinite_loop=kwargs.pop('use_infinite_loop', False), \
248 | eos_sym=self.state['eos_sym'], \
249 | skip_utterance=self.state.get('skip_utterance', False), \
250 | skip_utterance_predict_both=self.state.get('skip_utterance_predict_both', False))
251 | else:
252 | SSIterator.__init__(self, dialogue_file, batch_size, \
253 | seed=kwargs.pop('seed', 1234), \
254 | max_len=kwargs.pop('max_len', -1), \
255 | use_infinite_loop=kwargs.pop('use_infinite_loop', False), \
256 | init_offset=self.state['train_iterator_offset'], \
257 | init_reshuffle_count=self.state['train_iterator_reshuffle_count'], \
258 | eos_sym=self.state['eos_sym'], \
259 | skip_utterance=self.state.get('skip_utterance', False), \
260 | skip_utterance_predict_both=self.state.get('skip_utterance_predict_both', False))
261 |
262 |
263 | self.batch_iter = None
264 | self.rng = numpy.random.RandomState(self.state['seed'])
265 |
266 | # Keep track of previous batch, because this is needed to specify random variables
267 | self.prev_batch = None
268 |
269 |
270 |
271 | self.last_returned_offset = 0
272 |
273 | def get_homogenous_batch_iter(self, batch_size = -1):
274 | while True:
275 | batch_size = self.batch_size if (batch_size == -1) else batch_size
276 |
277 | data = []
278 | for k in range(self.k_batches):
279 | batch = SSIterator.next(self)
280 | if batch:
281 | data.append(batch)
282 |
283 | if not len(data):
284 | return
285 |
286 | number_of_batches = len(data)
287 | data = list(itertools.chain.from_iterable(data))
288 |
289 | # Split list of words from the offset index and reshuffle count
290 | data_x = []
291 | data_offset = []
292 | data_reshuffle_count = []
293 | for i in range(len(data)):
294 | data_x.append(data[i][0])
295 | data_offset.append(data[i][1])
296 | data_reshuffle_count.append(data[i][2])
297 |
298 | if len(data_offset) > 0:
299 | self.last_returned_offset = data_offset[-1]
300 | self.last_returned_reshuffle_count = data_reshuffle_count[-1]
301 |
302 | x = numpy.asarray(list(itertools.chain(data_x)))
303 |
304 | lens = numpy.asarray([map(len, x)])
305 | order = numpy.argsort(lens.max(axis=0))
306 |
307 | for k in range(number_of_batches):
308 | indices = order[k * batch_size:(k + 1) * batch_size]
309 | full_batch = create_padded_batch(self.state, self.rng, [x[indices]])
310 |
311 | if full_batch['num_dialogues'] < batch_size:
312 | print 'Skipping incomplete batch!'
313 | continue
314 |
315 | if full_batch['max_length'] < 3:
316 | print 'Skipping small batch!'
317 | continue
318 |
319 |
320 | # Then split batches to have size 'max_grad_steps'
321 | splits = int(math.ceil(float(full_batch['max_length']) / float(self.state['max_grad_steps'])))
322 | batches = []
323 | for i in range(0, splits):
324 | batch = copy.deepcopy(full_batch)
325 |
326 | # Retrieve start and end position (index) of current mini-batch
327 | start_pos = self.state['max_grad_steps'] * i
328 | if start_pos > 0:
329 | start_pos = start_pos - 1
330 |
331 | # We need to copy over the last token from each batch onto the next,
332 | # because this is what the model expects.
333 | end_pos = min(full_batch['max_length'], self.state['max_grad_steps'] * (i + 1))
334 |
335 | batch['x'] = full_batch['x'][start_pos:end_pos, :]
336 | batch['x_reversed'] = full_batch['x_reversed'][start_pos:end_pos, :]
337 | batch['x_mask'] = full_batch['x_mask'][start_pos:end_pos, :]
338 | batch['max_length'] = end_pos - start_pos
339 | batch['num_preds'] = numpy.sum(batch['x_mask']) - numpy.sum(batch['x_mask'][0,:])
340 |
341 | # For each batch we compute the number of dialogues as a fraction of the full batch,
342 | # that way, when we add them together, we get the total number of dialogues.
343 | batch['num_dialogues'] = float(full_batch['num_dialogues']) / float(splits)
344 | batch['x_reset'] = numpy.ones(self.state['bs'], dtype='float32')
345 |
346 | batches.append(batch)
347 |
348 | if len(batches) > 0:
349 | batches[-1]['x_reset'] = numpy.zeros(self.state['bs'], dtype='float32')
350 |
351 | # Trim the last very short batch
352 | if batches[-1]['max_length'] < 3:
353 | del batches[-1]
354 | batches[-1]['x_reset'] = numpy.zeros(self.state['bs'], dtype='float32')
355 | logger.debug("Truncating last mini-batch...")
356 |
357 | for batch in batches:
358 | if batch:
359 | yield batch
360 |
361 |
362 | def start(self):
363 | SSIterator.start(self)
364 | self.batch_iter = None
365 |
366 | def next(self, batch_size = -1):
367 | """
368 | We can specify a batch size,
369 | independent of the object initialization.
370 | """
371 | # If there are no more batches in list, try to generate new batches
372 | if not self.batch_iter:
373 | self.batch_iter = self.get_homogenous_batch_iter(batch_size)
374 |
375 | try:
376 | # Retrieve next batch
377 | batch = next(self.batch_iter)
378 |
379 | # Add Gaussian random variables to batch.
380 | # We add them separetly for each batch to save memory.
381 | # If we instead had added them to the full batch before splitting into mini-batches,
382 | # the random variables would take up several GBs for big batches and long documents.
383 | batch = add_random_variables_to_batch(self.state, self.rng, batch, self.prev_batch, self.evaluate_mode)
384 | # Keep track of last batch
385 | self.prev_batch = batch
386 | except StopIteration:
387 | return None
388 | return batch
389 |
390 |
391 | def get_offset(self):
392 | return self.last_returned_offset
393 |
394 | def get_reshuffle_count(self):
395 | return self.last_returned_reshuffle_count
396 |
397 |
398 | def get_train_iterator(state):
399 | train_data = Iterator(
400 | state['train_dialogues'],
401 | int(state['bs']),
402 | state=state,
403 | seed=state['seed'],
404 | use_infinite_loop=True,
405 | max_len=state.get('max_len', -1),
406 | evaluate_mode=False)
407 |
408 | valid_data = Iterator(
409 | state['valid_dialogues'],
410 | int(state['bs']),
411 | state=state,
412 | seed=state['seed'],
413 | use_infinite_loop=False,
414 | max_len=state.get('max_len', -1),
415 | evaluate_mode=True)
416 | return train_data, valid_data
417 |
418 | def get_test_iterator(state):
419 | assert 'test_dialogues' in state
420 |
421 | test_data = Iterator(
422 | state.get('test_dialogues'),
423 | int(state['bs']),
424 | state=state,
425 | seed=state['seed'],
426 | use_infinite_loop=False,
427 | max_len=state.get('max_len', -1),
428 | evaluate_mode=True)
429 | return test_data
430 |
--------------------------------------------------------------------------------
/model.py:
--------------------------------------------------------------------------------
1 | import logging
2 | import numpy
3 | import theano
4 | logger = logging.getLogger(__name__)
5 |
6 | # This is the list of strings required to ignore, if we're going to take a pretrained HRED model
7 | # and fine-tune it as a variational model.
8 | # parameter_strings_to_ignore = ["latent_utterance_prior", "latent_utterance_approx_posterior", "Wd_", "bd_"]
9 |
10 |
11 | class Model(object):
12 | def __init__(self):
13 | self.floatX = theano.config.floatX
14 | # Parameters of the model
15 | self.params = []
16 |
17 | def save(self, filename):
18 | """
19 | Save the model to file `filename`
20 | """
21 | vals = dict([(x.name, x.get_value()) for x in self.params])
22 | numpy.savez(filename, **vals)
23 |
24 | def load(self, filename, parameter_strings_to_ignore=[]):
25 | """
26 | Load the model.
27 |
28 | Any parameter which has one of the strings inside parameter_strings_to_ignore as a substring,
29 | will not be loaded from the file (but instead initialized as a new model, which usually means random).
30 | """
31 | vals = numpy.load(filename)
32 | for p in self.params:
33 | load_parameter = True
34 | for string_to_ignore in parameter_strings_to_ignore:
35 | if string_to_ignore in p.name:
36 | logger.debug('Initializing parameter {} as in new model'.format(p.name))
37 | load_parameter = False
38 |
39 | if load_parameter:
40 | if p.name in vals:
41 | logger.debug('Loading {} of {}'.format(p.name, p.get_value(borrow=True).shape))
42 | if p.get_value().shape != vals[p.name].shape:
43 | raise Exception('Shape mismatch: {} != {} for {}'.format(p.get_value().shape, vals[p.name].shape, p.name))
44 | p.set_value(vals[p.name])
45 | else:
46 | logger.error('No parameter {} given: default initialization used'.format(p.name))
47 | unknown = set(vals.keys()) - {p.name for p in self.params}
48 | if len(unknown):
49 | logger.error('Unknown parameters {} given'.format(unknown))
50 |
--------------------------------------------------------------------------------
/numpy_compat.py:
--------------------------------------------------------------------------------
1 | '''
2 | Compatibility with older numpy's providing argpartition replacement.
3 |
4 | '''
5 |
6 |
7 | '''
8 | Created on Sep 12, 2014
9 |
10 | @author: chorows
11 | '''
12 |
13 | __all__ = ['argpartition']
14 |
15 | import numpy
16 | import warnings
17 |
18 | if hasattr(numpy, 'argpartition'):
19 | argpartition = numpy.argpartition
20 | else:
21 | try:
22 | import bottleneck
23 | #warnings.warn('Your numpy is too old (You have %s, we need 1.7.1), but we have found argpartsort in bottleneck' % (numpy.__version__,))
24 | def argpartition(a, kth, axis=-1):
25 | return bottleneck.argpartsort(a, kth, axis)
26 | except ImportError:
27 | warnings.warn('''Beam search will be slow!
28 |
29 | Your numpy is old (you have v. %s) and doesn't provide an argpartition function.
30 | Either upgrade numpy, or install bottleneck (https://pypi.python.org/pypi/Bottleneck).
31 |
32 | If you run this from within LISA lab you probably want to run: pip install bottleneck --user
33 | ''' % (numpy.__version__,))
34 | def argpartition(a, kth, axis=-1, order=None):
35 | return numpy.argsort(a, axis=axis, order=order)
36 |
--------------------------------------------------------------------------------
/sample.py:
--------------------------------------------------------------------------------
1 | #!/usr/bin/env python
2 |
3 | import argparse
4 | import cPickle
5 | import traceback
6 | import logging
7 | import time
8 | import sys
9 |
10 | import os
11 | import numpy
12 | import codecs
13 | import search
14 | import utils
15 |
16 | from dialog_encdec import DialogEncoderDecoder
17 | from numpy_compat import argpartition
18 | from state import prototype_state
19 |
20 | logger = logging.getLogger(__name__)
21 |
22 | class Timer(object):
23 | def __init__(self):
24 | self.total = 0
25 |
26 | def start(self):
27 | self.start_time = time.time()
28 |
29 | def finish(self):
30 | self.total += time.time() - self.start_time
31 |
32 | def parse_args():
33 | parser = argparse.ArgumentParser("Sample (with beam-search) from the session model")
34 |
35 | parser.add_argument("--ignore-unk",
36 | action="store_false",
37 | help="Disables the generation of unknown words ( tokens)")
38 |
39 | parser.add_argument("model_prefix",
40 | help="Path to the model prefix (without _model.npz or _state.pkl)")
41 |
42 | parser.add_argument("context",
43 | help="File of input contexts")
44 |
45 | parser.add_argument("output",
46 | help="Output file")
47 |
48 | parser.add_argument("--beam_search",
49 | action="store_true",
50 | help="Use beam search instead of random search")
51 |
52 | parser.add_argument("--n-samples",
53 | default="1", type=int,
54 | help="Number of samples")
55 |
56 | parser.add_argument("--n-turns",
57 | default=1, type=int,
58 | help="Number of dialog turns to generate")
59 |
60 | parser.add_argument("--verbose",
61 | action="store_true", default=False,
62 | help="Be verbose")
63 |
64 | parser.add_argument("changes", nargs="?", default="", help="Changes to state")
65 | return parser.parse_args()
66 |
67 | def main():
68 | args = parse_args()
69 | state = prototype_state()
70 |
71 | state_path = args.model_prefix + "_state.pkl"
72 | model_path = args.model_prefix + "_model.npz"
73 |
74 | with open(state_path) as src:
75 | state.update(cPickle.load(src))
76 |
77 | logging.basicConfig(level=getattr(logging, state['level']), format="%(asctime)s: %(name)s: %(levelname)s: %(message)s")
78 |
79 | state['compute_training_updates'] = False
80 |
81 | model = DialogEncoderDecoder(state)
82 |
83 | sampler = search.RandomSampler(model)
84 | if args.beam_search:
85 | sampler = search.BeamSampler(model)
86 |
87 | if os.path.isfile(model_path):
88 | logger.debug("Loading previous model")
89 | model.load(model_path)
90 | else:
91 | raise Exception("Must specify a valid model path")
92 |
93 | contexts = [[]]
94 | lines = open(args.context, "r").readlines()
95 | if len(lines):
96 | contexts = [x.strip() for x in lines]
97 |
98 | print('Sampling started...')
99 | context_samples, context_costs = sampler.sample(contexts,
100 | n_samples=args.n_samples,
101 | n_turns=args.n_turns,
102 | ignore_unk=args.ignore_unk,
103 | verbose=args.verbose)
104 | print('Sampling finished.')
105 | print('Saving to file...')
106 |
107 | # Write to output file
108 | output_handle = open(args.output, "w")
109 | for context_sample in context_samples:
110 | print >> output_handle, '\t'.join(context_sample)
111 | output_handle.close()
112 | print('Saving to file finished.')
113 | print('All done!')
114 |
115 | if __name__ == "__main__":
116 | main()
117 |
118 |
--------------------------------------------------------------------------------
/search.py:
--------------------------------------------------------------------------------
1 | #!/usr/bin/env python
2 |
3 | import argparse
4 | import cPickle
5 | import traceback
6 | import logging
7 | import time
8 | import sys
9 |
10 | import os
11 | import numpy
12 | import codecs
13 |
14 | from dialog_encdec import DialogEncoderDecoder
15 | from numpy_compat import argpartition
16 | from state import prototype_state
17 | logger = logging.getLogger(__name__)
18 |
19 | def sample_wrapper(sample_logic):
20 | def sample_apply(*args, **kwargs):
21 | sampler = args[0]
22 | contexts = args[1]
23 |
24 | verbose = kwargs.get('verbose', False)
25 |
26 | if verbose:
27 | logger.info("Starting {} : {} start sequences in total".format(sampler.name, len(contexts)))
28 |
29 | context_samples = []
30 | context_costs = []
31 |
32 | # Start loop for each utterance
33 | for context_id, context_utterances in enumerate(contexts):
34 | if verbose:
35 | logger.info("Searching for {}".format(context_utterances))
36 |
37 | # Convert contextes into list of ids
38 | joined_context = []
39 | if len(context_utterances) == 0:
40 | joined_context = [sampler.model.eos_sym]
41 | else:
42 | utterance_ids = sampler.model.words_to_indices(context_utterances.split())
43 | # Add eos tokens
44 | if len(utterance_ids) > 0:
45 | if not utterance_ids[0] == sampler.model.eos_sym:
46 | utterance_ids = [sampler.model.eos_sym] + utterance_ids
47 | if not utterance_ids[-1] == sampler.model.eos_sym:
48 | utterance_ids += [sampler.model.eos_sym]
49 |
50 | else:
51 | utterance_ids = [sampler.model.eos_sym]
52 |
53 | joined_context += utterance_ids
54 |
55 | samples, costs = sample_logic(sampler, joined_context, **kwargs)
56 |
57 | # Convert back indices to list of words
58 | converted_samples = map(lambda sample : sampler.model.indices_to_words(sample, exclude_end_sym=kwargs.get('n_turns', 1) == 1), samples)
59 | # Join the list of words
60 | converted_samples = map(' '.join, converted_samples)
61 |
62 | if verbose:
63 | for i in range(len(converted_samples)):
64 | #print "Samples {}: {}".format(costs[i], converted_samples[i].encode('utf-8'))
65 | logger.info("Samples {}: {}".format(costs[i], converted_samples[i].encode('utf-8')))
66 |
67 | context_samples.append(converted_samples)
68 | context_costs.append(costs)
69 |
70 | return context_samples, context_costs
71 | return sample_apply
72 |
73 | class Sampler(object):
74 | """
75 | An abstract sampler class
76 | """
77 | def __init__(self, model):
78 | # Compile beam search
79 | self.name = 'Sampler'
80 | self.model = model
81 | self.compiled = False
82 | self.max_len = 160
83 |
84 | def compile(self):
85 | self.next_probs_predictor = self.model.build_next_probs_function()
86 | self.compute_encoding = self.model.build_encoder_function()
87 |
88 | if not self.model.reset_utterance_decoder_at_end_of_utterance:
89 | self.compute_decoder_encoding = self.model.build_decoder_encoding()
90 |
91 | self.compiled = True
92 |
93 | def select_next_words(self, next_probs, step_num, how_many):
94 | pass
95 |
96 | def count_n_turns(self, utterance):
97 | return len([w for w in utterance \
98 | if w == self.model.eos_sym])
99 |
100 | @sample_wrapper
101 | def sample(self, *args, **kwargs):
102 | context = args[0]
103 |
104 | max_context_length = kwargs.get('max_context_length', 400)
105 | if len(context) > max_context_length:
106 | context = context[-max_context_length:]
107 |
108 | n_samples = kwargs.get('n_samples', 1)
109 | ignore_unk = kwargs.get('ignore_unk', True)
110 | min_length = kwargs.get('min_length', 1)
111 | max_length = kwargs.get('max_length', 30)
112 | beam_diversity = kwargs.get('beam_diversity', 1)
113 | normalize_by_length = kwargs.get('normalize_by_length', True)
114 | verbose = kwargs.get('verbose', False)
115 | n_turns = kwargs.get('n_turns', 1)
116 |
117 | if not self.compiled:
118 | self.compile()
119 |
120 | # Convert to matrix, each column is a context
121 | # [[1,1,1],[4,4,4],[2,2,2]]
122 | context = numpy.repeat(numpy.array(context, dtype='int32')[:,None],
123 | n_samples, axis=1)
124 |
125 | if context[-1, 0] != self.model.eos_sym:
126 | raise Exception('Last token of context, when present,'
127 | 'should be the end of utterance: %d' % self.model.eos_sym)
128 |
129 | # Generate the reversed context
130 | reversed_context = self.model.reverse_utterances(context)
131 |
132 | if self.model.direct_connection_between_encoders_and_decoder:
133 | if self.model.bidirectional_utterance_encoder:
134 | dialog_enc_size = self.model.sdim+self.model.qdim_encoder*2
135 | else:
136 | dialog_enc_size = self.model.sdim+self.model.qdim_encoder
137 | else:
138 | dialog_enc_size = self.model.sdim
139 |
140 | prev_hs = numpy.zeros((n_samples, dialog_enc_size), dtype='float32')
141 |
142 | prev_hd = numpy.zeros((n_samples, self.model.utterance_decoder.complete_hidden_state_size), dtype='float32')
143 |
144 | if not self.model.reset_utterance_decoder_at_end_of_utterance:
145 | assert self.model.bs >= context.shape[1]
146 | enlarged_context = numpy.zeros((context.shape[0], self.model.bs), dtype='int32')
147 | enlarged_context[:, 0:context.shape[1]] = context[:]
148 | enlarged_reversed_context = numpy.zeros((context.shape[0], self.model.bs), dtype='int32')
149 | enlarged_reversed_context[:, 0:context.shape[1]] = reversed_context[:]
150 |
151 | ran_gaussian_vector = self.model.rng.normal(size=(context.shape[0],n_samples,self.model.latent_gaussian_per_utterance_dim)).astype('float32')
152 | ran_uniform_vector = self.model.rng.uniform(low=0.0, high=1.0, size=(context.shape[0],n_samples,self.model.latent_piecewise_per_utterance_dim)).astype('float32')
153 |
154 | zero_mask = numpy.zeros((context.shape[0], self.model.bs), dtype='float32')
155 | zero_vector = numpy.zeros((self.model.bs), dtype='float32')
156 | ones_mask = numpy.zeros((context.shape[0], self.model.bs), dtype='float32')
157 |
158 | # Computes new utterance decoder hidden states (including intermediate utterance encoder and dialogue encoder hidden states)
159 | new_hd = self.compute_decoder_encoding(enlarged_context, enlarged_reversed_context, self.max_len, zero_mask, zero_vector, ran_gaussian_vector, ran_uniform_vector, ones_mask)
160 |
161 |
162 | prev_hd[:] = new_hd[0][-1][0:context.shape[1], :]
163 |
164 | fin_gen = []
165 | fin_costs = []
166 |
167 | gen = [[] for i in range(n_samples)]
168 | costs = [0. for i in range(n_samples)]
169 | beam_empty = False
170 |
171 | # Compute random vector as additional input
172 | ran_gaussian_vectors = self.model.rng.normal(size=(n_samples,self.model.latent_gaussian_per_utterance_dim)).astype('float32')
173 | ran_uniform_vectors = self.model.rng.uniform(low=0.0, high=1.0, size=(n_samples,self.model.latent_piecewise_per_utterance_dim)).astype('float32')
174 |
175 | # HACK
176 | #ran_uniform_vectors = numpy.greater(ran_uniform_vectors, 0.5).astype('float32')
177 |
178 |
179 | for k in range(max_length):
180 | if len(fin_gen) >= n_samples or beam_empty:
181 | break
182 |
183 | if verbose:
184 | logger.info("{} : sampling step {}, beams alive {}".format(self.name, k, len(gen)))
185 |
186 | # Here we aggregate the context and recompute the hidden state
187 | # at both session level and query level.
188 | # Stack only when we sampled something
189 | if k > 0:
190 | context = numpy.vstack([context, \
191 | numpy.array(map(lambda g: g[-1], gen))]).astype('int32')
192 | reversed_context = numpy.copy(context)
193 | for idx in range(context.shape[1]):
194 | eos_indices = numpy.where(context[:, idx] == self.model.eos_sym)[0]
195 | prev_eos_index = -1
196 | for eos_index in eos_indices:
197 | reversed_context[(prev_eos_index+2):eos_index, idx] = (reversed_context[(prev_eos_index+2):eos_index, idx])[::-1]
198 | prev_eos_index = eos_index
199 |
200 | prev_words = context[-1, :]
201 |
202 | # Recompute encoder states, hs and random variables
203 | # only for those particular utterances that meet the end-of-utterance token
204 | indx_update_hs = [num for num, prev_word in enumerate(prev_words)
205 | if prev_word == self.model.eos_sym]
206 |
207 | if len(indx_update_hs):
208 | encoder_states = self.compute_encoding(context[:, indx_update_hs], reversed_context[:, indx_update_hs], self.max_len)
209 | prev_hs[indx_update_hs] = encoder_states[1][-1]
210 | ran_gaussian_vectors[indx_update_hs,:] = self.model.rng.normal(size=(len(indx_update_hs),self.model.latent_gaussian_per_utterance_dim)).astype('float32')
211 | ran_uniform_vectors[indx_update_hs,:] = self.model.rng.uniform(low=0.0, high=1.0, size=(len(indx_update_hs),self.model.latent_piecewise_per_utterance_dim)).astype('float32')
212 |
213 |
214 | # HACK
215 | #ran_uniform_vectors = numpy.greater(ran_uniform_vectors, 0.5).astype('float32')
216 |
217 | # ... done
218 | next_probs, new_hd = self.next_probs_predictor(prev_hs, prev_hd, prev_words, context, ran_gaussian_vectors, ran_uniform_vectors)
219 |
220 |
221 |
222 | assert next_probs.shape[1] == self.model.idim
223 |
224 | # Adjust log probs according to search restrictions
225 | if ignore_unk:
226 | next_probs[:, self.model.unk_sym] = 0
227 | if k <= min_length:
228 | next_probs[:, self.model.eos_sym] = 0
229 | next_probs[:, self.model.eod_sym] = 0
230 |
231 | # Update costs
232 | next_costs = numpy.array(costs)[:, None] - numpy.log(next_probs)
233 |
234 | # Select next words here
235 | (beam_indx, word_indx), costs = self.select_next_words(next_costs, next_probs, k, n_samples)
236 |
237 | # Update the stacks
238 | new_gen = []
239 | new_costs = []
240 | new_sources = []
241 |
242 | for num, (beam_ind, word_ind, cost) in enumerate(zip(beam_indx, word_indx, costs)):
243 | if len(new_gen) > n_samples:
244 | break
245 |
246 | hypothesis = gen[beam_ind] + [word_ind]
247 |
248 | # End of utterance has been detected
249 | n_turns_hypothesis = self.count_n_turns(hypothesis)
250 | if n_turns_hypothesis == n_turns:
251 | if verbose:
252 | logger.debug("adding utterance {} from beam {}".format(hypothesis, beam_ind))
253 |
254 | # We finished sampling
255 | fin_gen.append(hypothesis)
256 | fin_costs.append(cost)
257 | elif self.model.eod_sym in hypothesis: # End of dialogue detected
258 | new_hypothesis = []
259 | for wrd in hypothesis:
260 | new_hypothesis += [wrd]
261 | if wrd == self.model.eod_sym:
262 | break
263 | hypothesis = new_hypothesis
264 |
265 | if verbose:
266 | logger.debug("adding utterance {} from beam {}".format(hypothesis, beam_ind))
267 |
268 | # We finished sampling
269 | fin_gen.append(hypothesis)
270 | fin_costs.append(cost)
271 | else:
272 | # Hypothesis recombination
273 | # TODO: pick the one with lowest cost
274 | has_similar = False
275 | if self.hyp_rec > 0:
276 | has_similar = len([g for g in new_gen if \
277 | g[-self.hyp_rec:] == hypothesis[-self.hyp_rec:]]) != 0
278 |
279 | if not has_similar:
280 | new_sources.append(beam_ind)
281 | new_gen.append(hypothesis)
282 | new_costs.append(cost)
283 |
284 | if verbose:
285 | for gen in new_gen:
286 | logger.debug("partial -> {}".format(' '.join(self.model.indices_to_words(gen))))
287 |
288 | prev_hd = new_hd[new_sources]
289 | prev_hs = prev_hs[new_sources]
290 | ran_gaussian_vectors = ran_gaussian_vectors[new_sources,:]
291 | ran_uniform_vectors = ran_uniform_vectors[new_sources,:]
292 | context = context[:, new_sources]
293 | reversed_context = reversed_context[:, new_sources]
294 | gen = new_gen
295 | costs = new_costs
296 | beam_empty = len(gen) == 0
297 |
298 | # If we have not sampled anything
299 | # then force include stuff
300 | if len(fin_gen) == 0:
301 | fin_gen = gen
302 | fin_costs = costs
303 |
304 | # Normalize costs
305 | if normalize_by_length:
306 | fin_costs = [(fin_costs[num]/len(fin_gen[num])) \
307 | for num in range(len(fin_gen))]
308 |
309 | fin_gen = numpy.array(fin_gen)[numpy.argsort(fin_costs)]
310 | fin_costs = numpy.array(sorted(fin_costs))
311 | return fin_gen[:n_samples], fin_costs[:n_samples]
312 |
313 | class RandomSampler(Sampler):
314 | def __init__(self, model):
315 | Sampler.__init__(self, model)
316 | self.name = 'RandomSampler'
317 | self.hyp_rec = 0
318 |
319 | def select_next_words(self, next_costs, next_probs, step_num, how_many):
320 | # Choice is complaining
321 | next_probs = next_probs.astype("float64")
322 | word_indx = numpy.array([self.model.rng.choice(self.model.idim, p = x/numpy.sum(x))
323 | for x in next_probs], dtype='int32')
324 | beam_indx = range(next_probs.shape[0])
325 |
326 | args = numpy.ravel_multi_index(numpy.array([beam_indx, word_indx]), next_costs.shape)
327 | return (beam_indx, word_indx), next_costs.flatten()[args]
328 |
329 | class BeamSampler(Sampler):
330 | def __init__(self, model):
331 | Sampler.__init__(self, model)
332 | self.name = 'BeamSampler'
333 | self.hyp_rec = 3
334 |
335 | def select_next_words(self, next_costs, next_probs, step_num, how_many):
336 | # Pick only on the first line (for the beginning of sampling)
337 | # This will avoid duplicate token.
338 | if step_num == 0:
339 | flat_next_costs = next_costs[:1, :].flatten()
340 | else:
341 | # Set the next cost to infinite for finished utterances (they will be replaced)
342 | # by other utterances in the beam
343 | flat_next_costs = next_costs.flatten()
344 |
345 | voc_size = next_costs.shape[1]
346 |
347 | args = numpy.argpartition(flat_next_costs, how_many)[:how_many]
348 | args = args[numpy.argsort(flat_next_costs[args])]
349 |
350 | return numpy.unravel_index(args, next_costs.shape), flat_next_costs[args]
351 |
352 |
353 |
--------------------------------------------------------------------------------
/tests/data/MT_WordEmb.pkl:
--------------------------------------------------------------------------------
1 | (lp1
2 | cnumpy.core.multiarray
3 | _reconstruct
4 | p2
5 | (cnumpy
6 | ndarray
7 | p3
8 | (I0
9 | tS'b'
10 | tRp4
11 | (I1
12 | (I23
13 | I10
14 | tcnumpy
15 | dtype
16 | p5
17 | (S'f8'
18 | I0
19 | I1
20 | tRp6
21 | (I3
22 | S'<'
23 | NNNI-1
24 | I-1
25 | I0
26 | tbI00
27 | 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28 | tbag2
29 | (g3
30 | (I0
31 | tS'b'
32 | tRp7
33 | (I1
34 | (I23
35 | I10
36 | tg6
37 | I00
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39 | tba.
--------------------------------------------------------------------------------
/tests/data/ttest.dialogues.pkl:
--------------------------------------------------------------------------------
https://raw.githubusercontent.com/julianser/hred-latent-piecewise/068478dd5b2aa9928168a62a479773e219505319/tests/data/ttest.dialogues.pkl
--------------------------------------------------------------------------------
/tests/data/ttest.semantic.pkl:
--------------------------------------------------------------------------------
1 | (lp1
2 | (lp2
3 | I0
4 | aI1
5 | aa(lp3
6 | I1
7 | aI1
8 | aa.
--------------------------------------------------------------------------------
/tests/data/ttrain.dialogues.pkl:
--------------------------------------------------------------------------------
https://raw.githubusercontent.com/julianser/hred-latent-piecewise/068478dd5b2aa9928168a62a479773e219505319/tests/data/ttrain.dialogues.pkl
--------------------------------------------------------------------------------
/tests/data/ttrain.dict.pkl:
--------------------------------------------------------------------------------
https://raw.githubusercontent.com/julianser/hred-latent-piecewise/068478dd5b2aa9928168a62a479773e219505319/tests/data/ttrain.dict.pkl
--------------------------------------------------------------------------------
/tests/data/ttrain.semantic.pkl:
--------------------------------------------------------------------------------
1 | (lp1
2 | (lp2
3 | I0
4 | aI1
5 | aa(lp3
6 | I1
7 | aI1
8 | aa.
--------------------------------------------------------------------------------
/tests/data/ttrain.txt:
--------------------------------------------------------------------------------
1 | how are you ? fine thanks ! and you ?
2 | what are you doing ? nothing much . are you serious ?
3 |
--------------------------------------------------------------------------------
/tests/data/ttrain.txt~:
--------------------------------------------------------------------------------
1 | how are you ? fine thanks ! and you ?
2 | what are you doing ? nothing much . are you serious ?
3 |
--------------------------------------------------------------------------------
/tests/data/tvalid.dialogues.pkl:
--------------------------------------------------------------------------------
https://raw.githubusercontent.com/julianser/hred-latent-piecewise/068478dd5b2aa9928168a62a479773e219505319/tests/data/tvalid.dialogues.pkl
--------------------------------------------------------------------------------
/tests/data/tvalid.semantic.pkl:
--------------------------------------------------------------------------------
1 | (lp1
2 | (lp2
3 | I0
4 | aI1
5 | aa(lp3
6 | I1
7 | aI1
8 | aa.
--------------------------------------------------------------------------------
/tests/data/tvalid.txt:
--------------------------------------------------------------------------------
1 | how are you ? fine thanks ! and you ?
2 | what are you doing ? nothing much . are you serious ?
3 |
--------------------------------------------------------------------------------
/tests/data/tvalid_contexts.txt:
--------------------------------------------------------------------------------
1 | how are you ? fine thanks ! and you ?
2 | what are you doing ? nothing much . are you serious ?
3 | you you you ?
4 | what what what ?
5 |
--------------------------------------------------------------------------------
/tests/data/tvalid_contexts.txt~:
--------------------------------------------------------------------------------
1 | how are you ? fine thanks ! and you ?
2 | what are you doing ? nothing much . are you serious ?
3 | you you you ?
4 | what what what ?
5 |
--------------------------------------------------------------------------------
/tests/data/tvalid_potential_responses.txt:
--------------------------------------------------------------------------------
1 | and you ? what about me ?
2 | leave me alone ! are you serious ?
3 | and you ? what about me ?
4 | leave me alone ! leave me alone !
5 |
--------------------------------------------------------------------------------
/tests/data/tvalid_potential_responses.txt~:
--------------------------------------------------------------------------------
1 | and you ? what about me ?
2 | leave me alone ! are you serious ?
3 | and you ? what about me ?
4 | leave me alone ! leave me alone !
5 |
--------------------------------------------------------------------------------
/tests/data/tvalid_responses.txt:
--------------------------------------------------------------------------------
1 | and you ?
2 | are you serious ?
3 | serious serious serious ?
4 | and and and ?
5 |
--------------------------------------------------------------------------------
/tests/data/tvalid_responses.txt~:
--------------------------------------------------------------------------------
1 | and you ?
2 | are you serious ?
3 | serious serious serious ?
4 | and and and ?
5 |
6 |
--------------------------------------------------------------------------------
/train.py:
--------------------------------------------------------------------------------
1 | # -*- coding: utf-8 -*-
2 | #!/usr/bin/env python
3 |
4 | from data_iterator import *
5 | from state import *
6 | from dialog_encdec import *
7 | from utils import *
8 |
9 | import time
10 | import traceback
11 | import sys
12 | import argparse
13 | import cPickle
14 | import logging
15 | import search
16 | import pprint
17 | import numpy
18 | import collections
19 | import signal
20 | import math
21 | import gc
22 |
23 | import os
24 | import os.path
25 |
26 | # For certain clusters (e.g. Guillumin) we use flag 'DUMP_EXPERIMENT_LOGS_TO_DISC'
27 | # to force dumping log outputs to file.
28 | if 'DUMP_EXPERIMENT_LOGS_TO_DISC' in os.environ:
29 | if os.environ['DUMP_EXPERIMENT_LOGS_TO_DISC'] == '1':
30 | sys.stdout = open('Exp_Out.txt', 'a')
31 | sys.stderr = open('Exp_Err.txt', 'a')
32 |
33 | from os import listdir
34 | from os.path import isfile, join
35 |
36 | import matplotlib
37 | matplotlib.use('Agg')
38 | import pylab
39 |
40 |
41 | class Unbuffered:
42 | def __init__(self, stream):
43 | self.stream = stream
44 |
45 | def write(self, data):
46 | self.stream.write(data)
47 | self.stream.flush()
48 |
49 | def __getattr__(self, attr):
50 | return getattr(self.stream, attr)
51 |
52 | sys.stdout = Unbuffered(sys.stdout)
53 | logger = logging.getLogger(__name__)
54 |
55 | ### Unique RUN_ID for this execution
56 | RUN_ID = str(time.time())
57 |
58 | ### Additional measures can be set here
59 | measures = ["train_cost", "train_misclass", "train_kl_divergence_cost", "train_posterior_gaussian_mean_variance", "valid_cost", "valid_misclass", "valid_posterior_gaussian_mean_variance", "valid_kl_divergence_cost", "valid_emi"]
60 |
61 |
62 | def init_timings():
63 | timings = {}
64 | for m in measures:
65 | timings[m] = []
66 | return timings
67 |
68 | def save(model, timings, train_iterator, post_fix = ''):
69 | print "Saving the model..."
70 |
71 | # ignore keyboard interrupt while saving
72 | start = time.time()
73 | s = signal.signal(signal.SIGINT, signal.SIG_IGN)
74 |
75 | model.state['train_iterator_offset'] = train_iterator.get_offset() + 1
76 | model.state['train_iterator_reshuffle_count'] = train_iterator.get_reshuffle_count()
77 |
78 | model.save(model.state['save_dir'] + '/' + model.state['run_id'] + "_" + model.state['prefix'] + post_fix + 'model.npz')
79 | cPickle.dump(model.state, open(model.state['save_dir'] + '/' + model.state['run_id'] + "_" + model.state['prefix'] + post_fix + 'state.pkl', 'w'))
80 | numpy.savez(model.state['save_dir'] + '/' + model.state['run_id'] + "_" + model.state['prefix'] + post_fix + 'timing.npz', **timings)
81 | signal.signal(signal.SIGINT, s)
82 |
83 | print "Model saved, took {}".format(time.time() - start)
84 |
85 | def load(model, filename, parameter_strings_to_ignore):
86 | print "Loading the model..."
87 |
88 | # ignore keyboard interrupt while saving
89 | start = time.time()
90 | s = signal.signal(signal.SIGINT, signal.SIG_IGN)
91 | model.load(filename, parameter_strings_to_ignore)
92 | signal.signal(signal.SIGINT, s)
93 |
94 | print "Model loaded, took {}".format(time.time() - start)
95 |
96 | def main(args):
97 | logging.basicConfig(level = logging.DEBUG,
98 | format = "%(asctime)s: %(name)s: %(levelname)s: %(message)s")
99 |
100 | state = eval(args.prototype)()
101 | timings = init_timings()
102 |
103 | auto_restarting = False
104 | if args.auto_restart:
105 | assert not args.save_every_valid_iteration
106 | assert len(args.resume) == 0
107 |
108 | directory = state['save_dir']
109 | if not directory[-1] == '/':
110 | directory = directory + '/'
111 |
112 | auto_resume_postfix = state['prefix'] + '_auto_model.npz'
113 |
114 | if os.path.exists(directory):
115 | directory_files = [f for f in listdir(directory) if isfile(join(directory, f))]
116 | resume_filename = ''
117 | for f in directory_files:
118 | if len(f) > len(auto_resume_postfix):
119 | if f[len(f) - len(auto_resume_postfix):len(f)] == auto_resume_postfix:
120 | if len(resume_filename) > 0:
121 | print 'ERROR: FOUND MULTIPLE MODELS IN DIRECTORY:', directory
122 | assert False
123 | else:
124 | resume_filename = directory + f[0:len(f)-len('__auto_model.npz')]
125 |
126 | if len(resume_filename) > 0:
127 | logger.debug("Found model to automatically resume: %s" % resume_filename)
128 | auto_restarting = True
129 | # Setup training to automatically resume training with the model found
130 | args.resume = resume_filename + '__auto'
131 | # Disable training from reinitialization any parameters
132 | args.reinitialize_decoder_parameters = False
133 | args.reinitialize_latent_variable_parameters = False
134 | else:
135 | logger.debug("Could not find any model to automatically resume...")
136 |
137 |
138 |
139 | if args.resume != "":
140 | logger.debug("Resuming %s" % args.resume)
141 |
142 | state_file = args.resume + '_state.pkl'
143 | timings_file = args.resume + '_timing.npz'
144 |
145 | if os.path.isfile(state_file) and os.path.isfile(timings_file):
146 | logger.debug("Loading previous state")
147 |
148 | state = cPickle.load(open(state_file, 'r'))
149 | timings = dict(numpy.load(open(timings_file, 'r')))
150 | for x, y in timings.items():
151 | timings[x] = list(y)
152 |
153 | # Increment seed to make sure we get newly shuffled batches when training on large datasets
154 | state['seed'] = state['seed']
155 |
156 | else:
157 | raise Exception("Cannot resume, cannot find files!")
158 |
159 |
160 |
161 | logger.debug("State:\n{}".format(pprint.pformat(state)))
162 | logger.debug("Timings:\n{}".format(pprint.pformat(timings)))
163 |
164 | if args.force_train_all_wordemb == True:
165 | state['fix_pretrained_word_embeddings'] = False
166 |
167 | model = DialogEncoderDecoder(state)
168 | rng = model.rng
169 |
170 | valid_rounds = 0
171 | save_model_on_first_valid = False
172 |
173 | if args.resume != "":
174 | filename = args.resume + '_model.npz'
175 | if os.path.isfile(filename):
176 | logger.debug("Loading previous model")
177 |
178 | parameter_strings_to_ignore = []
179 | if args.reinitialize_decoder_parameters:
180 | parameter_strings_to_ignore += ['Wd_']
181 | parameter_strings_to_ignore += ['bd_']
182 |
183 | save_model_on_first_valid = True
184 | if args.reinitialize_latent_variable_parameters:
185 | parameter_strings_to_ignore += ['latent_utterance_prior']
186 | parameter_strings_to_ignore += ['latent_utterance_approx_posterior']
187 | parameter_strings_to_ignore += ['kl_divergence_cost_weight']
188 | parameter_strings_to_ignore += ['latent_dcgm_encoder']
189 |
190 | save_model_on_first_valid = True
191 |
192 | load(model, filename, parameter_strings_to_ignore)
193 | else:
194 | raise Exception("Cannot resume, cannot find model file!")
195 |
196 | if 'run_id' not in model.state:
197 | raise Exception('Backward compatibility not ensured! (need run_id in state)')
198 |
199 | else:
200 | # assign new run_id key
201 | model.state['run_id'] = RUN_ID
202 |
203 | logger.debug("Compile trainer")
204 | if not state["use_nce"]:
205 | if ('add_latent_gaussian_per_utterance' in state) and (state["add_latent_gaussian_per_utterance"]):
206 | logger.debug("Training using variational lower bound on log-likelihood")
207 | else:
208 | logger.debug("Training using exact log-likelihood")
209 |
210 | train_batch = model.build_train_function()
211 | else:
212 | logger.debug("Training with noise contrastive estimation")
213 | train_batch = model.build_nce_function()
214 |
215 | eval_batch = model.build_eval_function()
216 |
217 | gamma_bounding = model.build_gamma_bounding_function()
218 |
219 | random_sampler = search.RandomSampler(model)
220 | beam_sampler = search.BeamSampler(model)
221 |
222 | logger.debug("Load data")
223 | train_data, \
224 | valid_data, = get_train_iterator(state)
225 | train_data.start()
226 |
227 | # Start looping through the dataset
228 | step = 0
229 | patience = state['patience']
230 | start_time = time.time()
231 |
232 | train_cost = 0
233 | train_kl_divergence_cost = 0
234 | train_posterior_gaussian_mean_variance = 0
235 | train_misclass = 0
236 | train_done = 0
237 | train_dialogues_done = 0.0
238 |
239 | prev_train_cost = 0
240 | prev_train_done = 0
241 |
242 | ex_done = 0
243 | is_end_of_batch = True
244 | start_validation = False
245 |
246 | batch = None
247 |
248 | while (step < state['loop_iters'] and
249 | (time.time() - start_time)/60. < state['time_stop'] and
250 | patience >= 0):
251 |
252 | # Flush to log files
253 | sys.stderr.flush()
254 | sys.stdout.flush()
255 |
256 | ### Sampling phase
257 | if step % 200 == 0:
258 | # First generate stochastic samples
259 | for param in model.params:
260 | print "%s = %.4f" % (param.name, numpy.sum(param.get_value() ** 2) ** 0.5)
261 |
262 | samples, costs = random_sampler.sample([[]], n_samples=1, n_turns=3)
263 | print "Sampled : {}".format(samples[0])
264 |
265 |
266 | ### Training phase
267 | batch = train_data.next()
268 |
269 | # Train finished
270 | if not batch:
271 | # Restart training
272 | logger.debug("Got None...")
273 | break
274 |
275 | logger.debug("[TRAIN] - Got batch %d,%d" % (batch['x'].shape[1], batch['max_length']))
276 |
277 | x_data = batch['x']
278 | x_data_reversed = batch['x_reversed']
279 | max_length = batch['max_length']
280 | x_cost_mask = batch['x_mask']
281 | x_reset = batch['x_reset']
282 | ran_gaussian_const_utterance = batch['ran_var_gaussian_constutterance']
283 | ran_uniform_const_utterance = batch['ran_var_uniform_constutterance']
284 |
285 | ran_decoder_drop_mask = batch['ran_decoder_drop_mask']
286 |
287 | is_end_of_batch = False
288 | if numpy.sum(numpy.abs(x_reset)) < 1:
289 | # Print when we reach the end of an example (e.g. the end of a dialogue or a document)
290 | # Knowing when the training procedure reaches the end is useful for diagnosing training problems
291 | #print 'END-OF-BATCH EXAMPLE!'
292 | is_end_of_batch = True
293 |
294 | if state['use_nce']:
295 | y_neg = rng.choice(size=(10, max_length, x_data.shape[1]), a=model.idim, p=model.noise_probs).astype('int32')
296 | c, kl_divergence_cost, posterior_gaussian_mean_variance = train_batch(x_data, x_data_reversed, y_neg, max_length, x_cost_mask, x_reset, ran_gaussian_const_utterance, ran_uniform_const_utterance, ran_decoder_drop_mask)
297 | else:
298 |
299 | latent_piecewise_utterance_variable_approx_posterior_alpha = 0.0
300 | latent_piecewise_utterance_variable_prior_alpha = 0.0
301 | kl_divergences_between_piecewise_prior_and_posterior = 0.0
302 | kl_divergences_between_gaussian_prior_and_posterior = 0.0
303 | latent_piecewise_posterior_sample = 0.0
304 | posterior_gaussian_mean_variance = 0.0
305 |
306 | if model.add_latent_piecewise_per_utterance and model.add_latent_gaussian_per_utterance:
307 | c, kl_divergence_cost, posterior_gaussian_mean_variance, latent_piecewise_utterance_variable_approx_posterior_alpha, latent_piecewise_utterance_variable_prior_alpha, kl_divergences_between_piecewise_prior_and_posterior, kl_divergences_between_gaussian_prior_and_posterior, latent_piecewise_posterior_sample = train_batch(x_data, x_data_reversed, max_length, x_cost_mask, x_reset, ran_gaussian_const_utterance, ran_uniform_const_utterance, ran_decoder_drop_mask)
308 | elif model.add_latent_gaussian_per_utterance:
309 | c, kl_divergence_cost, posterior_gaussian_mean_variance, kl_divergences_between_gaussian_prior_and_posterior = train_batch(x_data, x_data_reversed, max_length, x_cost_mask, x_reset, ran_gaussian_const_utterance, ran_uniform_const_utterance, ran_decoder_drop_mask)
310 | elif model.add_latent_piecewise_per_utterance:
311 | c, kl_divergence_cost, kl_divergences_between_piecewise_prior_and_posterior = train_batch(x_data, x_data_reversed, max_length, x_cost_mask, x_reset, ran_gaussian_const_utterance, ran_uniform_const_utterance, ran_decoder_drop_mask)
312 | else:
313 | c = train_batch(x_data, x_data_reversed, max_length, x_cost_mask, x_reset, ran_gaussian_const_utterance, ran_uniform_const_utterance, ran_decoder_drop_mask)
314 | kl_divergence_cost = 0.0
315 |
316 |
317 |
318 |
319 |
320 | gamma_bounding()
321 |
322 | # Print batch statistics
323 | print 'cost_sum', c
324 | print 'cost_mean', c / float(numpy.sum(x_cost_mask))
325 |
326 | if model.add_latent_piecewise_per_utterance or model.add_latent_gaussian_per_utterance:
327 | print 'kl_divergence_cost_sum', kl_divergence_cost
328 | print 'kl_divergence_cost_mean', kl_divergence_cost / float(len(numpy.where(x_data == model.eos_sym)[0]))
329 |
330 | if model.add_latent_gaussian_per_utterance:
331 | print 'posterior_gaussian_mean_variance', posterior_gaussian_mean_variance
332 | print 'kl_divergences_between_gaussian_prior_and_posterior', numpy.sum(kl_divergences_between_gaussian_prior_and_posterior), numpy.min(kl_divergences_between_gaussian_prior_and_posterior), numpy.max(kl_divergences_between_gaussian_prior_and_posterior)
333 |
334 | if model.add_latent_piecewise_per_utterance:
335 | print 'kl_divergences_between_piecewise_prior_and_posterior', numpy.sum(kl_divergences_between_piecewise_prior_and_posterior), numpy.min(kl_divergences_between_piecewise_prior_and_posterior), numpy.max(kl_divergences_between_piecewise_prior_and_posterior)
336 |
337 |
338 | if numpy.isinf(c) or numpy.isnan(c):
339 | logger.warn("Got NaN cost .. skipping")
340 | gc.collect()
341 | continue
342 |
343 | train_cost += c
344 | train_kl_divergence_cost += kl_divergence_cost
345 | train_posterior_gaussian_mean_variance += posterior_gaussian_mean_variance
346 |
347 | train_done += batch['num_preds']
348 | train_dialogues_done += batch['num_dialogues']
349 |
350 | this_time = time.time()
351 | if step % state['train_freq'] == 0:
352 | elapsed = this_time - start_time
353 |
354 | # Keep track of training cost for the last 'train_freq' batches.
355 | current_train_cost = train_cost/train_done
356 | if prev_train_done >= 1 and abs(train_done - prev_train_done) > 0:
357 | current_train_cost = float(train_cost - prev_train_cost)/float(train_done - prev_train_done)
358 |
359 | if numpy.isinf(c) or numpy.isnan(c):
360 | current_train_cost = 0
361 |
362 | prev_train_cost = train_cost
363 | prev_train_done = train_done
364 |
365 | h, m, s = ConvertTimedelta(this_time - start_time)
366 |
367 | # We need to catch exceptions due to high numbers in exp
368 | try:
369 | print ".. %.2d:%.2d:%.2d %4d mb # %d bs %d maxl %d acc_cost = %.4f acc_word_perplexity = %.4f cur_cost = %.4f cur_word_perplexity = %.4f acc_mean_word_error = %.4f acc_mean_kl_divergence_cost = %.8f acc_mean_posterior_variance = %.8f" % (h, m, s,\
370 | state['time_stop'] - (time.time() - start_time)/60.,\
371 | step, \
372 | batch['x'].shape[1], \
373 | batch['max_length'], \
374 | float(train_cost/train_done), \
375 | math.exp(float(train_cost/train_done)), \
376 | current_train_cost, \
377 | math.exp(current_train_cost), \
378 | float(train_misclass)/float(train_done), \
379 | float(train_kl_divergence_cost/train_done), \
380 | float(train_posterior_gaussian_mean_variance/train_dialogues_done))
381 | except:
382 | pass
383 |
384 |
385 | ### Inspection phase
386 | if (step % 20 == 0):
387 | if model.add_latent_gaussian_per_utterance and model.add_latent_piecewise_per_utterance:
388 | try:
389 | print 'posterior_gaussian_mean_combination', model.posterior_mean_combination.W.get_value()
390 |
391 | except:
392 | pass
393 |
394 | print 'latent_piecewise_utterance_variable_approx_posterior_alpha', numpy.mean(latent_piecewise_utterance_variable_approx_posterior_alpha), latent_piecewise_utterance_variable_approx_posterior_alpha
395 |
396 | print 'latent_piecewise_utterance_variable_prior_alpha', numpy.mean(latent_piecewise_utterance_variable_prior_alpha), latent_piecewise_utterance_variable_prior_alpha
397 |
398 | print 'latent_piecewise_utterance_variable_alpha_diff', (latent_piecewise_utterance_variable_approx_posterior_alpha-latent_piecewise_utterance_variable_prior_alpha)
399 |
400 |
401 | print 'latent_piecewise_posterior_sample', numpy.min(latent_piecewise_posterior_sample), numpy.max(latent_piecewise_posterior_sample), latent_piecewise_posterior_sample[0, 0, :]
402 | print 'ran_uniform_const_utterance', numpy.min(ran_uniform_const_utterance), numpy.max(ran_uniform_const_utterance), ran_uniform_const_utterance[0, 0, :]
403 |
404 | if model.utterance_decoder_gating.upper() == 'GRU' and model.decoder_bias_type.upper() == 'ALL':
405 | Wd_s_q = model.utterance_decoder.Wd_s_q.get_value()
406 | Wd_s_q_len = Wd_s_q.shape[0]
407 | print 'model.utterance_decoder Wd_s_q full', numpy.mean(numpy.abs(Wd_s_q)), numpy.mean(Wd_s_q**2)
408 |
409 | if model.add_latent_gaussian_per_utterance and model.add_latent_piecewise_per_utterance:
410 | Wd_s_q_gaussian = Wd_s_q[Wd_s_q_len-2*model.latent_piecewise_per_utterance_dim:Wd_s_q_len-model.latent_piecewise_per_utterance_dim, :]
411 | Wd_s_q_piecewise = Wd_s_q[Wd_s_q_len-model.latent_piecewise_per_utterance_dim:Wd_s_q_len, :]
412 |
413 | print 'model.utterance_decoder Wd_s_q gaussian', numpy.mean(numpy.abs(Wd_s_q_gaussian)), numpy.mean(Wd_s_q_gaussian**2)
414 | print 'model.utterance_decoder Wd_s_q piecewise', numpy.mean(numpy.abs(Wd_s_q_piecewise)), numpy.mean(Wd_s_q_piecewise**2)
415 |
416 | print 'model.utterance_decoder Wd_s_q piecewise/gaussian', numpy.mean(numpy.abs(Wd_s_q_piecewise))/numpy.mean(numpy.abs(Wd_s_q_gaussian)), numpy.mean(Wd_s_q_piecewise**2)/numpy.mean(Wd_s_q_gaussian**2)
417 |
418 | elif model.add_latent_gaussian_per_utterance:
419 | Wd_s_q_piecewise = Wd_s_q[Wd_s_q_len-model.latent_piecewise_per_utterance_dim:Wd_s_q_len, :]
420 |
421 | print 'model.utterance_decoder Wd_s_q piecewise', numpy.mean(numpy.abs(Wd_s_q_piecewise)), numpy.mean(Wd_s_q_piecewise**2)
422 |
423 |
424 | elif model.add_latent_piecewise_per_utterance:
425 | Wd_s_q_gaussian = Wd_s_q[Wd_s_q_len-model.latent_piecewise_per_utterance_dim:Wd_s_q_len, :]
426 |
427 | print 'model.utterance_decoder Wd_s_q gaussian', numpy.mean(numpy.abs(Wd_s_q_gaussian)), numpy.mean(Wd_s_q_gaussian**2)
428 |
429 |
430 |
431 | if model.utterance_decoder_gating.upper() == 'BOW' and model.decoder_bias_type.upper() == 'ALL':
432 | Wd_bow_W_in = model.utterance_decoder.Wd_bow_W_in.get_value()
433 | Wd_bow_W_in_len = Wd_bow_W_in.shape[0]
434 | print 'model.utterance_decoder Wd_bow_W_in full', numpy.mean(numpy.abs(Wd_bow_W_in)), numpy.mean(Wd_bow_W_in**2)
435 |
436 | if model.add_latent_gaussian_per_utterance and model.add_latent_piecewise_per_utterance:
437 | Wd_bow_W_in_gaussian = Wd_bow_W_in[Wd_bow_W_in_len-2*model.latent_piecewise_per_utterance_dim:Wd_bow_W_in_len-model.latent_piecewise_per_utterance_dim, :]
438 | Wd_bow_W_in_piecewise = Wd_bow_W_in[Wd_bow_W_in_len-model.latent_piecewise_per_utterance_dim:Wd_bow_W_in_len, :]
439 |
440 | print 'model.utterance_decoder Wd_bow_W_in gaussian', numpy.mean(numpy.abs(Wd_bow_W_in_gaussian)), numpy.mean(Wd_bow_W_in_gaussian**2)
441 | print 'model.utterance_decoder Wd_bow_W_in piecewise', numpy.mean(numpy.abs(Wd_bow_W_in_piecewise)), numpy.mean(Wd_bow_W_in_piecewise**2)
442 |
443 | print 'model.utterance_decoder Wd_bow_W_in piecewise/gaussian', numpy.mean(numpy.abs(Wd_bow_W_in_piecewise))/numpy.mean(numpy.abs(Wd_bow_W_in_gaussian)), numpy.mean(Wd_bow_W_in_piecewise**2)/numpy.mean(Wd_bow_W_in_gaussian**2)
444 |
445 | elif model.add_latent_gaussian_per_utterance:
446 | Wd_bow_W_in_piecewise = Wd_bow_W_in[Wd_bow_W_in_len-model.latent_piecewise_per_utterance_dim:Wd_bow_W_in_len, :]
447 |
448 | print 'model.utterance_decoder Wd_bow_W_in piecewise', numpy.mean(numpy.abs(Wd_bow_W_in_piecewise)), numpy.mean(Wd_bow_W_in_piecewise**2)
449 |
450 |
451 | elif model.add_latent_piecewise_per_utterance:
452 | Wd_bow_W_in_gaussian = Wd_bow_W_in[Wd_bow_W_in_len-model.latent_piecewise_per_utterance_dim:Wd_bow_W_in_len, :]
453 |
454 | print 'model.utterance_decoder Wd_bow_W_in gaussian', numpy.mean(numpy.abs(Wd_bow_W_in_gaussian)), numpy.mean(Wd_bow_W_in_gaussian**2)
455 |
456 |
457 |
458 |
459 |
460 |
461 |
462 |
463 |
464 | ### Evaluation phase
465 | if valid_data is not None and\
466 | step % state['valid_freq'] == 0 and step > 1:
467 | start_validation = True
468 |
469 | # Only start validation loop once it's time to validate and once all previous batches have been reset
470 | if start_validation and is_end_of_batch:
471 | start_validation = False
472 | valid_data.start()
473 | valid_cost = 0
474 | valid_kl_divergence_cost = 0
475 | valid_posterior_gaussian_mean_variance = 0
476 |
477 | valid_wordpreds_done = 0
478 | valid_dialogues_done = 0
479 |
480 |
481 | logger.debug("[VALIDATION START]")
482 |
483 | while True:
484 | batch = valid_data.next()
485 |
486 | # Validation finished
487 | if not batch:
488 | break
489 |
490 |
491 | logger.debug("[VALID] - Got batch %d,%d" % (batch['x'].shape[1], batch['max_length']))
492 |
493 | x_data = batch['x']
494 | x_data_reversed = batch['x_reversed']
495 | max_length = batch['max_length']
496 | x_cost_mask = batch['x_mask']
497 |
498 | x_reset = batch['x_reset']
499 | ran_gaussian_const_utterance = batch['ran_var_gaussian_constutterance']
500 | ran_uniform_const_utterance = batch['ran_var_uniform_constutterance']
501 |
502 | ran_decoder_drop_mask = batch['ran_decoder_drop_mask']
503 |
504 | posterior_gaussian_mean_variance = 0.0
505 |
506 | c, c_list, kl_divergence_cost = eval_batch(x_data, x_data_reversed, max_length, x_cost_mask, x_reset, ran_gaussian_const_utterance, ran_uniform_const_utterance, ran_decoder_drop_mask)
507 |
508 |
509 | # Rehape into matrix, where rows are validation samples and columns are tokens
510 | # Note that we use max_length-1 because we don't get a cost for the first token
511 | # (the first token is always assumed to be eos)
512 | c_list = c_list.reshape((batch['x'].shape[1],max_length-1), order=(1,0))
513 | c_list = numpy.sum(c_list, axis=1)
514 |
515 | words_in_dialogues = numpy.sum(x_cost_mask, axis=0)
516 | c_list = c_list / words_in_dialogues
517 |
518 |
519 | if numpy.isinf(c) or numpy.isnan(c):
520 | continue
521 |
522 | valid_cost += c
523 | valid_kl_divergence_cost += kl_divergence_cost
524 | valid_posterior_gaussian_mean_variance += posterior_gaussian_mean_variance
525 |
526 | # Print batch statistics
527 | print 'valid_cost', valid_cost
528 | print 'valid_kl_divergence_cost sample', kl_divergence_cost
529 | print 'posterior_gaussian_mean_variance', posterior_gaussian_mean_variance
530 |
531 |
532 | valid_wordpreds_done += batch['num_preds']
533 | valid_dialogues_done += batch['num_dialogues']
534 |
535 | logger.debug("[VALIDATION END]")
536 |
537 | valid_cost /= max(1.0, valid_wordpreds_done)
538 | valid_kl_divergence_cost /= max(1.0, valid_wordpreds_done)
539 | valid_posterior_gaussian_mean_variance /= max(1.0, valid_dialogues_done)
540 |
541 | if (len(timings["valid_cost"]) == 0) \
542 | or (valid_cost < numpy.min(timings["valid_cost"])) \
543 | or (save_model_on_first_valid and valid_rounds == 0):
544 | patience = state['patience']
545 |
546 | # Save model if there is decrease in validation cost
547 | save(model, timings, train_data)
548 | print 'best valid_cost', valid_cost
549 | elif valid_cost >= timings["valid_cost"][-1] * state['cost_threshold']:
550 | patience -= 1
551 |
552 | if args.save_every_valid_iteration:
553 | save(model, timings, train_data, '_' + str(step) + '_')
554 | if args.auto_restart:
555 | save(model, timings, train_data, '_auto_')
556 |
557 |
558 | # We need to catch exceptions due to high numbers in exp
559 | try:
560 | print "** valid cost (NLL) = %.4f, valid word-perplexity = %.4f, valid kldiv cost (per word) = %.8f, valid mean posterior variance (per word) = %.8f, patience = %d" % (float(valid_cost), float(math.exp(valid_cost)), float(valid_kl_divergence_cost), float(valid_posterior_gaussian_mean_variance), patience)
561 | except:
562 | try:
563 | print "** valid cost (NLL) = %.4f, patience = %d" % (float(valid_cost), patience)
564 | except:
565 | pass
566 |
567 |
568 | timings["train_cost"].append(train_cost/train_done)
569 | timings["train_kl_divergence_cost"].append(train_kl_divergence_cost/train_done)
570 | timings["train_posterior_gaussian_mean_variance"].append(train_posterior_gaussian_mean_variance/train_dialogues_done)
571 | timings["valid_cost"].append(valid_cost)
572 | timings["valid_kl_divergence_cost"].append(valid_kl_divergence_cost)
573 | timings["valid_posterior_gaussian_mean_variance"].append(valid_posterior_gaussian_mean_variance)
574 |
575 | # Reset train cost, train misclass and train done metrics
576 | train_cost = 0
577 | train_done = 0
578 | prev_train_cost = 0
579 | prev_train_done = 0
580 |
581 | # Count number of validation rounds done so far
582 | valid_rounds += 1
583 |
584 | step += 1
585 |
586 | logger.debug("All done, exiting...")
587 |
588 | def parse_args():
589 | parser = argparse.ArgumentParser()
590 | parser.add_argument("--resume", type=str, default="", help="Resume training from that state")
591 |
592 | parser.add_argument("--force_train_all_wordemb", action='store_true', help="If true, will force the model to train all word embeddings in the encoder. This switch can be used to fine-tune a model which was trained with fixed (pretrained) encoder word embeddings.")
593 |
594 | parser.add_argument("--save_every_valid_iteration", action='store_true', help="If true, will save a unique copy of the model at every validation round.")
595 |
596 | parser.add_argument("--auto_restart", action='store_true', help="If true, will maintain a copy of the current model parameters updated at every validation round. Upon initialization, the script will automatically scan the output directory and and resume training of a previous model (if such exists). This option is meant to be used for training models on clusters with hard wall-times. This option is incompatible with the \"resume\" and \"save_every_valid_iteration\" options.")
597 |
598 | parser.add_argument("--prototype", type=str, help="Prototype to use (must be specified)", default='prototype_state')
599 |
600 | parser.add_argument("--reinitialize-latent-variable-parameters", action='store_true', help="Can be used when resuming a model. If true, will initialize all latent variable parameters randomly instead of loading them from previous model.")
601 |
602 | parser.add_argument("--reinitialize-decoder-parameters", action='store_true', help="Can be used when resuming a model. If true, will initialize all parameters of the utterance decoder randomly instead of loading them from previous model.")
603 |
604 | args = parser.parse_args()
605 | return args
606 |
607 | if __name__ == "__main__":
608 | # Models only run with float32
609 | assert(theano.config.floatX == 'float32')
610 |
611 | args = parse_args()
612 | main(args)
613 |
614 | # grep 'valid cost' LSTM_Baseline_exp1/LOGS/python_train.py_prototype_twitter_LSTM_NormOp_ClusterExp1_2016-09-23_22-48-31.523628/dbi_146c0c3c23d.out-* | grep -o -P '(?<=word-perplexity = ).*(?=, valid kldiv)'
615 |
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/utils.py:
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1 | import numpy
2 | import adam
3 | import theano
4 | import theano.tensor as T
5 | from collections import OrderedDict
6 |
7 | PRINT_VARS = True
8 |
9 | def DPrint(name, var):
10 | if PRINT_VARS is False:
11 | return var
12 |
13 | return theano.printing.Print(name)(var)
14 |
15 | def sharedX(value, name=None, borrow=False, dtype=None):
16 | if dtype is None:
17 | dtype = theano.config.floatX
18 | return theano.shared(theano._asarray(value, dtype=dtype),
19 | name=name,
20 | borrow=borrow)
21 |
22 | def Adam(grads, lr=0.0002, b1=0.1, b2=0.001, e=1e-8):
23 | return adam.Adam(grads, lr, b1, b2, e)
24 |
25 | def Adagrad(grads, lr):
26 | updates = OrderedDict()
27 | for param in grads.keys():
28 | # sum_square_grad := \sum g^2
29 | sum_square_grad = sharedX(param.get_value() * 0.)
30 | if param.name is not None:
31 | sum_square_grad.name = 'sum_square_grad_' + param.name
32 |
33 | # Accumulate gradient
34 | new_sum_squared_grad = sum_square_grad + T.sqr(grads[param])
35 |
36 | # Compute update
37 | delta_x_t = (- lr / T.sqrt(numpy.float32(1e-5) + new_sum_squared_grad)) * grads[param]
38 |
39 | # Apply update
40 | updates[sum_square_grad] = new_sum_squared_grad
41 | updates[param] = param + delta_x_t
42 | return updates
43 |
44 | def Adadelta(grads, decay=0.95, epsilon=1e-6):
45 | updates = OrderedDict()
46 | for param in grads.keys():
47 | # mean_squared_grad := E[g^2]_{t-1}
48 | mean_square_grad = sharedX(param.get_value() * 0.)
49 | # mean_square_dx := E[(\Delta x)^2]_{t-1}
50 | mean_square_dx = sharedX(param.get_value() * 0.)
51 |
52 | if param.name is not None:
53 | mean_square_grad.name = 'mean_square_grad_' + param.name
54 | mean_square_dx.name = 'mean_square_dx_' + param.name
55 |
56 | # Accumulate gradient
57 | new_mean_squared_grad = (
58 | decay * mean_square_grad +
59 | (1 - decay) * T.sqr(grads[param])
60 | )
61 |
62 | # Compute update
63 | rms_dx_tm1 = T.sqrt(mean_square_dx + epsilon)
64 | rms_grad_t = T.sqrt(new_mean_squared_grad + epsilon)
65 | delta_x_t = - rms_dx_tm1 / rms_grad_t * grads[param]
66 |
67 | # Accumulate updates
68 | new_mean_square_dx = (
69 | decay * mean_square_dx +
70 | (1 - decay) * T.sqr(delta_x_t)
71 | )
72 |
73 | # Apply update
74 | updates[mean_square_grad] = new_mean_squared_grad
75 | updates[mean_square_dx] = new_mean_square_dx
76 | updates[param] = param + delta_x_t
77 |
78 | return updates
79 |
80 | def RMSProp(grads, lr, decay=0.95, eta=0.9, epsilon=1e-6):
81 | """
82 | RMSProp gradient method
83 | """
84 | updates = OrderedDict()
85 | for param in grads.keys():
86 | # mean_squared_grad := E[g^2]_{t-1}
87 | mean_square_grad = sharedX(param.get_value() * 0.)
88 | mean_grad = sharedX(param.get_value() * 0.)
89 | delta_grad = sharedX(param.get_value() * 0.)
90 |
91 | if param.name is None:
92 | raise ValueError("Model parameters must be named.")
93 |
94 | mean_square_grad.name = 'mean_square_grad_' + param.name
95 |
96 | # Accumulate gradient
97 |
98 | new_mean_grad = (decay * mean_grad + (1 - decay) * grads[param])
99 | new_mean_squared_grad = (decay * mean_square_grad + (1 - decay) * T.sqr(grads[param]))
100 |
101 | # Compute update
102 | scaled_grad = grads[param] / T.sqrt(new_mean_squared_grad - new_mean_grad ** 2 + epsilon)
103 | new_delta_grad = eta * delta_grad - lr * scaled_grad
104 |
105 | # Apply update
106 | updates[delta_grad] = new_delta_grad
107 | updates[mean_grad] = new_mean_grad
108 | updates[mean_square_grad] = new_mean_squared_grad
109 | updates[param] = param + new_delta_grad
110 |
111 | return updates
112 |
113 | class Maxout(object):
114 | def __init__(self, maxout_part):
115 | self.maxout_part = maxout_part
116 |
117 | def __call__(self, x):
118 | shape = x.shape
119 | if x.ndim == 2:
120 | shape1 = T.cast(shape[1] / self.maxout_part, 'int64')
121 | shape2 = T.cast(self.maxout_part, 'int64')
122 | x = x.reshape([shape[0], shape1, shape2])
123 | x = x.max(2)
124 | else:
125 | shape1 = T.cast(shape[2] / self.maxout_part, 'int64')
126 | shape2 = T.cast(self.maxout_part, 'int64')
127 | x = x.reshape([shape[0], shape[1], shape1, shape2])
128 | x = x.max(3)
129 | return x
130 |
131 | def UniformInit(rng, sizeX, sizeY, lb=-0.01, ub=0.01):
132 | """ Uniform Init """
133 | return rng.uniform(size=(sizeX, sizeY), low=lb, high=ub).astype(theano.config.floatX)
134 |
135 | def OrthogonalInit(rng, sizeX, sizeY, sparsity=-1, scale=1):
136 | """
137 | Orthogonal Initialization
138 | """
139 |
140 | sizeX = int(sizeX)
141 | sizeY = int(sizeY)
142 |
143 | assert sizeX == sizeY, 'for orthogonal init, sizeX == sizeY'
144 |
145 | if sparsity < 0:
146 | sparsity = sizeY
147 | else:
148 | sparsity = numpy.minimum(sizeY, sparsity)
149 |
150 | values = numpy.zeros((sizeX, sizeY), dtype=theano.config.floatX)
151 | for dx in xrange(sizeX):
152 | perm = rng.permutation(sizeY)
153 | new_vals = rng.normal(loc=0, scale=scale, size=(sparsity,))
154 | values[dx, perm[:sparsity]] = new_vals
155 |
156 | # Use SciPy:
157 | if sizeX*sizeY > 5000000:
158 | import scipy
159 | u,s,v = scipy.linalg.svd(values)
160 | else:
161 | u,s,v = numpy.linalg.svd(values)
162 | values = u * scale
163 | return values.astype(theano.config.floatX)
164 |
165 | def GrabProbs(classProbs, target, gRange=None):
166 | if classProbs.ndim > 2:
167 | classProbs = classProbs.reshape((classProbs.shape[0] * classProbs.shape[1], classProbs.shape[2]))
168 | else:
169 | classProbs = classProbs
170 |
171 | if target.ndim > 1:
172 | tflat = target.flatten()
173 | else:
174 | tflat = target
175 | return T.diag(classProbs.T[tflat])
176 |
177 | def NormalInit(rng, sizeX, sizeY, scale=0.01, sparsity=-1):
178 | """
179 | Normal Initialization
180 | """
181 |
182 | sizeX = int(sizeX)
183 | sizeY = int(sizeY)
184 |
185 | if sparsity < 0:
186 | sparsity = sizeY
187 |
188 | sparsity = numpy.minimum(sizeY, sparsity)
189 | values = numpy.zeros((sizeX, sizeY), dtype=theano.config.floatX)
190 | for dx in xrange(sizeX):
191 | perm = rng.permutation(sizeY)
192 | new_vals = rng.normal(loc=0, scale=scale, size=(sparsity,))
193 | values[dx, perm[:sparsity]] = new_vals
194 |
195 | return values.astype(theano.config.floatX)
196 |
197 | def NormalInit3D(rng, sizeX, sizeY, sizeZ, scale=0.01, sparsity=-1):
198 | """
199 | Normal Initialization for 3D tensor
200 | """
201 |
202 | sizeX = int(sizeX)
203 | sizeY = int(sizeY)
204 | sizeZ = int(sizeZ)
205 | values = numpy.zeros((sizeX, sizeY, sizeZ), dtype=theano.config.floatX)
206 | for i in range(sizeZ):
207 | values[:,:,i] = NormalInit(rng, sizeX, sizeY, scale, sparsity)
208 |
209 | return values.astype(theano.config.floatX)
210 |
211 | def ConvertTimedelta(seconds_diff):
212 | hours = seconds_diff // 3600
213 | minutes = (seconds_diff % 3600) // 60
214 | seconds = (seconds_diff % 60)
215 | return hours, minutes, seconds
216 |
217 | def SoftMax(x):
218 | x = T.exp(x - T.max(x, axis=x.ndim-1, keepdims=True))
219 | return x / T.sum(x, axis=x.ndim-1, keepdims=True)
220 |
221 | def stable_log(x):
222 | return T.log(T.maximum(x, 0.0000000001))
223 |
224 |
225 |
226 | # Performs either batch normalization or layer normalization
227 | def NormalizationOperator(normop_type, x, gamma, mask, estimated_mean=0.0, estimated_var=1.0):
228 | if normop_type.upper() == 'BN':
229 | if x.ndim == 3:
230 | return FeedforwardBatchNormalization(x, gamma, mask, estimated_mean=0.0, estimated_var=1.0)
231 | elif x.ndim == 2:
232 | return RecurrentBatchNormalization(x, gamma, mask, estimated_mean=0.0, estimated_var=1.0)
233 | elif normop_type.upper() == 'LN':
234 | return LayerNormalization(x, gamma, mask, estimated_mean=0.0, estimated_var=1.0)
235 | elif normop_type.upper() == 'NONE' or normop_type.upper() == '':
236 | assert x.ndim == 3 or x.ndim == 2
237 |
238 | output = x + 0.0*gamma
239 | if x.ndim == 3:
240 | x_mean = T.mean(x, axis=1).dimshuffle(0, 1, 'x')
241 | x_var = T.var(x, axis=1).dimshuffle(0, 1, 'x')
242 | else:
243 | x_mean = T.mean(x, axis=1).dimshuffle(0, 'x')
244 | x_var = T.var(x, axis=1).dimshuffle(0, 'x')
245 |
246 | return output, x_mean[0], x_var[0]
247 | else:
248 | raise ValueError("Error! normop_type must take a value in set {\'BN\', \'LN\', \'NONE\'}!")
249 |
250 |
251 | # Batch normalization of input variable on first and second tensor indices (time x batch example x hidden units)
252 | # Elements where mask is zero, will not be used to compute the mean and variance estimates,
253 | # however these elements will still be batch normalized.
254 | def FeedforwardBatchNormalization(x, gamma, mask, estimated_mean=0.0, estimated_var=1.0):
255 | assert x.ndim == 3
256 | if mask:
257 | assert mask.ndim == 2
258 | mask = mask.dimshuffle(0, 1, 'x')
259 |
260 | mask_nonzeros = T.sum(T.sum(mask, axis=0), axis=0)
261 | mask_nonzeros_weight = T.cast(T.minimum(1.0, T.sum(mask, axis=0)) / mask.shape[1], 'float32')
262 |
263 | x_masked = x*mask
264 |
265 | x_mean = (T.sum(T.sum(x_masked, axis=0), axis=0)/mask_nonzeros).dimshuffle('x', 'x', 0)
266 | x_mean_adjusted = mask_nonzeros_weight*x_mean + (1.0 - mask_nonzeros_weight)*estimated_mean
267 | x_zero_mean = x - x_mean_adjusted
268 |
269 | x_var = (T.sum(T.sum(x_zero_mean**2, axis=0), axis=0)/mask_nonzeros).dimshuffle('x', 'x', 0)
270 | x_var_adjusted = mask_nonzeros_weight*x_var + (1.0 - mask_nonzeros_weight)*estimated_var
271 |
272 | else:
273 | x_mean = estimated_mean.dimshuffle('x', 'x', 0)
274 | x_mean_adjusted = x_mean
275 |
276 | x_zero_mean = x - x_mean
277 |
278 | x_var = estimated_var.dimshuffle('x', 'x', 0)
279 | x_var_adjusted = x_var
280 |
281 |
282 | return gamma*(x_zero_mean / T.sqrt(x_var_adjusted+1e-7)), x_mean_adjusted[0, 0], x_var_adjusted[0, 0]
283 |
284 | # Batch normalization of input variable on first tensor index (time x batch example x hidden units)
285 | # Elements where mask is zero, will not be used to compute the mean and variance estimates,
286 | # however these elements will still be batch normalized.
287 | def RecurrentBatchNormalization(x, gamma, mask, estimated_mean=0.0, estimated_var=1.0):
288 | assert x.ndim == 2
289 | assert mask.ndim == 1
290 |
291 |
292 | mask = mask.dimshuffle(0, 'x')
293 |
294 | mask_nonzeros = T.sum(mask, axis=0)
295 | mask_nonzeros_weight = mask_nonzeros / T.sum(T.ones_like(mask), axis=0)
296 |
297 | x_masked = x*mask
298 |
299 | x_mean = (T.sum(x_masked, axis=0)/mask_nonzeros).dimshuffle('x', 0)
300 | x_mean_adjusted = mask_nonzeros_weight*x_mean + (1.0 - mask_nonzeros_weight)*estimated_mean
301 |
302 | x_zero_mean = x - x_mean_adjusted #x_zero_mean = x_masked - x_mean_adjusted
303 |
304 | x_var = T.sum(x_zero_mean**2, axis=0)/mask_nonzeros.dimshuffle('x', 0)
305 | x_var_adjusted = mask_nonzeros_weight*x_var + (1.0 - mask_nonzeros_weight)*estimated_var
306 |
307 | return gamma*(x_zero_mean / T.sqrt(x_var_adjusted+1e-7)), x_mean_adjusted[0], x_var_adjusted[0]
308 |
309 | # Performs layer normalization of input variable on last tensor index,
310 | # where we assume variable has shape (time x batch example x hidden units) or (batch example x hidden units).
311 | # Similar to batch normalization, the function also returns the mean and variance across hidden units.
312 | def LayerNormalization(x, gamma, mask, estimated_mean=0.0, estimated_var=1.0):
313 | assert x.ndim == 3 or x.ndim == 2
314 | if x.ndim == 3:
315 | x_mean = T.mean(x, axis=2).dimshuffle(0, 1, 'x')
316 | x_var = T.var(x, axis=2).dimshuffle(0, 1, 'x')
317 | return gamma*((x - x_mean) / T.sqrt(x_var+1e-7)), x_mean[0, 0], x_var[0, 0]
318 |
319 | elif x.ndim == 2:
320 | x_mean = T.mean(x, axis=1).dimshuffle(0, 'x')
321 | x_var = T.var(x, axis=1).dimshuffle(0, 'x')
322 | return gamma*((x - x_mean) / T.sqrt(x_var+1e-7)), x_mean[0], x_var[0]
323 |
324 |
325 |
326 | # Does theano.batched_dot. If last_axis is on it will loop over the last axis, otherwise it will loop over the first axis.
327 | def BatchedDot(x, y, last_axis=False):
328 | if last_axis==False:
329 | return T.batched_dot(x, y)
330 | elif last_axis:
331 | if x.ndim == 2:
332 | shuffled_x = x.dimshuffle(1,0)
333 | elif x.ndim == 3:
334 | shuffled_x = x.dimshuffle(2,0,1)
335 | elif x.ndim == 4:
336 | shuffled_x = x.dimshuffle(3,0,1,2)
337 | else:
338 | raise ValueError('BatchedDot inputs must have between 2-4 dimensions, but x has ' + str(x.ndim) + ' dimensions')
339 |
340 | if y.ndim == 2:
341 | shuffled_y = y.dimshuffle(1,0)
342 | elif y.ndim == 3:
343 | shuffled_y = y.dimshuffle(2,0,1)
344 | elif y.ndim == 4:
345 | shuffled_y = y.dimshuffle(3,0,1,2)
346 | else:
347 | raise ValueError('BatchedDot inputs must have between 2-4 dimensions, but y has ' + str(y.ndim) + ' dimensions')
348 |
349 | dot = T.batched_dot(shuffled_x, shuffled_y)
350 | if dot.ndim == 2:
351 | return dot.dimshuffle(1,0)
352 | elif dot.ndim == 3:
353 | return dot.dimshuffle(1,2,0)
354 | elif dot.ndim == 4:
355 | return dot.dimshuffle(1,2,3,0)
356 |
357 |
358 |
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