├── .Rbuildignore ├── .gitignore ├── DESCRIPTION ├── NAMESPACE ├── R ├── coxgrad.R ├── functions.R ├── refitting.R └── snpnet.R ├── README.md ├── helpers ├── export_betas.R ├── snpnet_misc.R ├── snpnet_misc.sh ├── snpnet_wrapper.R └── snpnet_wrapper.sh ├── inst └── extdata │ ├── sample.pgen │ ├── sample.phe │ ├── sample.psam │ ├── sample.pvar.zst │ └── vars.rds ├── man ├── predict_snpnet.Rd ├── readPheMaster.Rd └── snpnet.Rd └── vignettes ├── vignette.Rmd ├── vignette.html └── vignette.pdf /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/junyangq/snpnet/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/junyangq/snpnet/HEAD/.gitignore -------------------------------------------------------------------------------- /DESCRIPTION: 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