├── .flake8 ├── .github ├── dependabot.yml └── workflows │ ├── lint.yml │ ├── papyri-lab-build.yml │ └── python-package.yml ├── .gitignore ├── .gitmodules ├── CONTRIBUTING.md ├── LICENSE ├── Readme.md ├── TODO ├── assets ├── astropy.gif ├── inline_graph.png ├── local_graph_zeroes.png ├── papyri-logo 2.png ├── papyri-logo-white-silhouete.png ├── papyri-nav.gif └── vs_math.png ├── codecov.yml ├── docs ├── crossrefs.rst ├── examples │ └── simple_plot.py └── index.rst ├── examples ├── IPython.toml ├── astropy.toml ├── dask.toml ├── distributed.toml ├── gallery1.py ├── img │ ├── astropy_project_logo.svg │ ├── dask-logo.png │ ├── ipython-logo.png │ ├── logo_pandas.png │ ├── matplotlib_logo.png │ ├── numpy_logo.png │ ├── nx.png │ ├── scipy_logo.png │ ├── skimage-logo.png │ └── xarray.png ├── matplotlib.toml ├── networkx.toml ├── numpy.toml ├── pandas.toml ├── papyri.toml ├── scipy.toml ├── skimage.toml └── xarray.toml ├── frontend ├── README.md ├── craco.config.js ├── package.json ├── public │ └── index.html ├── src │ ├── index.css │ ├── index.js │ └── setupTests.js └── webpack.config.js ├── of_interest ├── papyri-lab ├── .copier-answers.yml ├── .github │ └── workflows │ │ ├── check-release.yml │ │ ├── prep-release.yml │ │ └── publish-release.yml ├── .gitignore ├── .prettierignore ├── .yarnrc.yml ├── CHANGELOG.md ├── LICENSE ├── README.md ├── RELEASE.md ├── babel.config.js ├── conftest.py ├── install.json ├── jest.config.js ├── jupyter-config │ └── server-config │ │ └── papyri_lab.json ├── package.json ├── papyri_lab │ ├── __init__.py │ ├── handlers.py │ └── tests │ │ ├── __init__.py │ │ └── test_handlers.py ├── pyproject.toml ├── schema │ └── plugin.json ├── setup.py ├── src │ ├── __tests__ │ │ └── papyri_lab.spec.ts │ ├── handler.ts │ ├── index.tsx │ ├── kernelspy.ts │ ├── papyri-comp.tsx │ └── widgets.tsx ├── style │ ├── app.css │ ├── base.css │ ├── index.css │ ├── index.js │ └── tailwind.css ├── tailwind.config.js ├── tsconfig.json ├── tsconfig.test.json ├── ui-tests │ ├── README.md │ ├── jupyter_server_test_config.py │ ├── package.json │ ├── playwright.config.js │ ├── tests │ │ └── papyri_lab.spec.ts │ └── yarn.lock └── yarn.lock ├── papyri-logo.png ├── papyri ├── __init__.py ├── __main__.py ├── app │ └── static │ │ ├── css │ │ └── main.e6c13ad2.css │ │ └── js │ │ ├── main.27408fde.js │ │ ├── main.27408fde.js.LICENSE.txt │ │ ├── react-syntax-highlighter │ │ └── lowlight-import.28e4165a.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_abnf.05a76338.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_accesslog.32f749c7.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_actionscript.bb38f24a.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_ada.481ce680.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_angelscript.98c5a3f3.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_apache.2bda4313.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_applescript.a85a925c.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_arcade.37c267c4.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_arduino.f37f4cd6.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_armasm.6f4bc87b.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_asciidoc.bfcbf425.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_aspectj.38a88f9f.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_autohotkey.488322bf.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_autoit.e0391fb1.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_avrasm.f9d85792.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_awk.401bf380.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_axapta.ed0ffd71.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_bash.3431dffb.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_basic.11a5bb09.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_bnf.d82143ed.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_brainfuck.ff2a19f8.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_c.de8c4076.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_cLike.3a7b72e9.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_cal.b19a3bea.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_capnproto.2da1bfd7.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_ceylon.097bcbb4.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_clean.7e2ace20.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_clojure.6b19fe1b.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_clojureRepl.fee2ecf3.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_cmake.fbc00b52.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_coffeescript.f7e5d130.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_coq.fea38f24.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_cos.c90a95c2.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_cpp.72bb40da.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_crmsh.a711828b.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_crystal.d76f8949.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_csharp.f956bcbc.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_csp.7d9d74fc.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_css.4d9a3b0a.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_d.53729672.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_dart.359c2f33.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_delphi.a0b95219.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_diff.80e1515e.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_django.c419cc28.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_dns.04d0d849.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_dockerfile.70aa854a.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_dos.fb0c25a6.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_dsconfig.e5507c1d.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_dts.661e4edb.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_dust.1cd11d28.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_ebnf.554e3c89.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_elixir.33629c57.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_elm.dde0c6f2.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_erb.59785893.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_erlang.28081647.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_erlangRepl.458f6dfd.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_excel.319afc83.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_fix.f41ae848.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_flix.6a14737f.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_fortran.c75e6426.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_fsharp.c9d38c2c.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_gams.5705df03.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_gauss.77bf390e.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_gcode.981fe2a0.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_gherkin.1e7c8975.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_glsl.0c2c0f95.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_gml.025842c4.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_go.803920b3.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_golo.e54d49b7.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_gradle.e4349b6d.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_groovy.a55d9da7.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_haml.6b37b8bf.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_handlebars.4fd9eebb.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_haskell.0681876f.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_haxe.6c2bb1c6.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_hsp.ee45182c.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_htmlbars.57aed14b.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_http.6d5ef38c.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_hy.0dbde1fb.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_inform7.945e3d94.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_ini.a8345944.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_irpf90.513b5683.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_isbl.37a2fcf4.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_java.89223ad9.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_javascript.615ff11f.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_jbossCli.0c636aac.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_json.2b5591d4.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_julia.c6382cee.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_juliaRepl.929db8ed.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_kotlin.aa4cb04d.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_lasso.8ddd84da.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_latex.a58280da.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_ldif.bb2432a2.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_leaf.fb60694e.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_less.688c21fd.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_lisp.ae312241.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_livecodeserver.b4e9709a.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_livescript.591fd028.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_llvm.bbc904df.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_lsl.ed3ce864.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_lua.c97203bb.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_makefile.75b416d5.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_markdown.b1862e6c.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_mathematica.caf10a39.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_matlab.1b4a7780.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_maxima.626e79e2.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_mel.ebd43aa7.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_mercury.ce858630.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_mipsasm.570eb00f.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_mizar.299411a6.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_mojolicious.91daedf6.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_monkey.4c780385.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_moonscript.7475f1dd.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_n1ql.5cf80507.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_nginx.57ff5510.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_nim.5773cb9c.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_nix.18d1ed0f.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_nodeRepl.5b2afe18.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_nsis.ef9d4ce5.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_objectivec.c6741304.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_ocaml.03443415.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_oneC.ea1636d7.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_openscad.8b4b4de9.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_oxygene.779de870.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_parser3.7a220733.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_perl.468f28d5.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_pf.58cf62aa.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_pgsql.c335da74.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_php.b8df94d0.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_phpTemplate.655b7b7b.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_plaintext.63506c87.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_pony.9aaa8c4e.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_powershell.544fad5d.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_processing.1b48c6fe.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_profile.85801a58.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_prolog.08ead49c.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_properties.02f0d3dc.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_protobuf.509fb15f.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_puppet.65299a98.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_purebasic.b4664a7f.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_python.bb4d479c.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_pythonRepl.a4384cad.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_q.b901fb64.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_qml.f83933ad.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_r.3e533a15.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_reasonml.8ed3bbda.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_rib.20ec1216.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_roboconf.dd37e900.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_routeros.2c151751.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_rsl.2775bd4c.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_ruby.d4078499.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_ruleslanguage.fd047883.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_rust.c255d233.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_sas.c18c6f1a.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_scala.be672113.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_scheme.c0925bc2.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_scilab.cd86565d.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_scss.4aa8ac5d.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_shell.7530ec41.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_smali.5319652e.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_smalltalk.fc9ada73.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_sml.79ba2214.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_sqf.1fbca842.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_sql.86dbabd9.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_sqlMore.b7ab7197.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_stan.94605f92.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_stata.f9391b76.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_step21.ff53092d.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_stylus.cce554ed.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_subunit.7e547849.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_swift.e059cbb4.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_taggerscript.98554592.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_tap.0ab5c0b8.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_tcl.a75258c9.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_thrift.734200a7.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_tp.e4863681.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_twig.60629699.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_typescript.60aeb3b3.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_vala.eb8e227e.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_vbnet.c204f922.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_vbscript.01d12d0b.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_vbscriptHtml.5fb6a1e4.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_verilog.af33f882.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_vhdl.3f6dcadf.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_vim.16e170aa.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_x86asm.c8f4e922.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_xl.6c6adc19.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_xml.50111671.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_xquery.06cf698d.chunk.js │ │ ├── react-syntax-highlighter_languages_highlight_yaml.7ef5360b.chunk.js │ │ └── react-syntax-highlighter_languages_highlight_zephir.6431d59e.chunk.js ├── browser.py ├── common_ast.py ├── config.py ├── core.py ├── crosslink.py ├── directives.py ├── errors.py ├── examples.py ├── gen.py ├── graphstore.py ├── ipython.py ├── jlab.py ├── miniserde.py ├── miscs.py ├── myst_ast.py ├── myst_serialiser.py ├── py.types ├── render.py ├── rich_render.py ├── signature.py ├── static │ ├── MathJax.js │ ├── extensions │ │ ├── MathMenu.js │ │ ├── MathZoom.js │ │ └── tex2jax.js │ ├── fa │ │ └── fontawesome.css │ ├── favicon.ico │ ├── graph_canvas.js │ ├── graph_svg.js │ ├── jax │ │ ├── input │ │ │ └── TeX │ │ │ │ └── config.js │ │ └── output │ │ │ └── HTML-CSS │ │ │ └── config.js │ ├── myst.css │ ├── myst.js │ ├── new.css │ ├── papyri-logo.png │ ├── papyri.css │ ├── papyri.tcss │ └── webfonts │ │ ├── fa-solid-900.ttf │ │ ├── fa-solid-900.woff │ │ └── fa-solid-900.woff2 ├── take2.py ├── templates │ ├── 404.tpl.j2 │ ├── examples.tpl.j2 │ ├── gallery.tpl.j2 │ ├── graph.tpl.j2 │ ├── head.tpl.j2 │ ├── html.tpl.j2 │ ├── index.tpl.j2 │ ├── macros.tpl.j2 │ ├── root.tpl.j2 │ ├── skeleton.tpl.j2 │ ├── toctree.tpl.j2 │ └── virtual.j2 ├── tests │ ├── __init__.py │ ├── corpus │ │ ├── no-space-parenthesis.expected.txt │ │ ├── no-space-parenthesis.sample.txt │ │ ├── test.expected.txt │ │ └── test.sample.txt │ ├── expected │ │ ├── numpy:einsum.expected │ │ ├── numpy:linspace.expected │ │ ├── papyri.examples.expected │ │ ├── papyri.examples:annotation_with_hex_addresses.expected │ │ └── papyri.examples:example1.expected │ ├── test_ascii_expected.py │ ├── test_corpus.py │ ├── test_error_collector.py │ ├── test_full_render.py │ ├── test_gen.py │ ├── test_parse.py │ ├── test_signatures.py │ ├── test_take2.py │ └── utils.py ├── textual.py ├── toc.py ├── tree.py ├── ts.py ├── utils.py └── vref.py ├── pyproject.toml ├── requirements-dev.txt ├── requirements.txt └── tools └── vendor_scripts.sh /.flake8: -------------------------------------------------------------------------------- 1 | [flake8] 2 | # References: 3 | # https://flake8.readthedocs.io/en/latest/user/configuration.html 4 | # https://flake8.readthedocs.io/en/latest/user/error-codes.html 5 | # https://pycodestyle.pycqa.org/en/latest/intro.html#error-codes 6 | exclude = node_modules,jupyter_server_test_config.py 7 | ignore = 8 | # bug bear assert False 9 | B011, 10 | # Extra space in brackets 11 | E20, 12 | # Multiple spaces around "," 13 | E231,E241, 14 | # Comments 15 | E26, 16 | # too many black lines 17 | E303, 18 | # Import formatting 19 | E4, 20 | # Comparing types instead of isinstance 21 | E721, 22 | # Assigning lambda expression 23 | E731, 24 | # Ambiguous variable names 25 | E741, 26 | # line break before binary operator 27 | W503, 28 | # line break after binary operator 29 | W504, 30 | # redefinition of unused 'loop' from line 10 31 | F811, 32 | max-line-length = 120 33 | max-complexity = 50 34 | 35 | 36 | -------------------------------------------------------------------------------- /.github/dependabot.yml: -------------------------------------------------------------------------------- 1 | # To get started with Dependabot version updates, you'll need to specify which 2 | # package ecosystems to update and where the package manifests are located. 3 | # Please see the documentation for all configuration options: 4 | # https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates 5 | 6 | version: 2 7 | updates: 8 | - package-ecosystem: "pip" # See documentation for possible values 9 | directory: "/" # Location of package manifests 10 | schedule: 11 | interval: "weekly" 12 | -------------------------------------------------------------------------------- /.github/workflows/lint.yml: -------------------------------------------------------------------------------- 1 | # This workflow will install Python dependencies, run tests and lint with a variety of Python versions 2 | # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions 3 | 4 | name: Linters 5 | 6 | on: 7 | push: 8 | branches: [ main ] 9 | pull_request: 10 | branches: [ main ] 11 | workflow_dispatch: 12 | inputs: 13 | name: 14 | description: 'Reason' 15 | required: false 16 | default: 'Just Cause' 17 | 18 | jobs: 19 | build: 20 | 21 | runs-on: ubuntu-latest 22 | strategy: 23 | matrix: 24 | python-version: [3.11] 25 | 26 | steps: 27 | - uses: actions/checkout@v4 28 | - name: Set up Python ${{ matrix.python-version }} 29 | uses: actions/setup-python@v3 30 | with: 31 | python-version: ${{ matrix.python-version }} 32 | cache: 'pip' 33 | - name: Install dependencies 34 | run: | 35 | python -m pip install --upgrade pip 36 | pip install -r requirements-dev.txt 37 | flit install --symlink 38 | - name: dependency tree 39 | run: | 40 | pipdeptree 41 | - name: dependency tree (reversed) 42 | run: | 43 | pipdeptree -r 44 | - name: Lint with black 45 | run: | 46 | black --check papyri 47 | - name: Lint with flake8 48 | if: always() 49 | run: | 50 | flake8 papyri 51 | - name: Test with mypy 52 | if: always() 53 | run: | 54 | python3 -m pip install types-requests types-cachetools types-toml 55 | mypy papyri 56 | -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 1 | __pycache__ 2 | .pytest_cache/ 3 | papyri/rst.so 4 | cache 5 | htmlcov 6 | .hypothesis 7 | .coverage 8 | html 9 | build 10 | *.lprof 11 | test.dat 12 | test.npy 13 | test.out 14 | node_modules 15 | *.js.map 16 | 17 | papyri/app/asset-manifest.json 18 | papyri/app/index.html 19 | -------------------------------------------------------------------------------- /.gitmodules: -------------------------------------------------------------------------------- 1 | [submodule "tree-sitter-rst"] 2 | path = tree-sitter-rst 3 | url = https://github.com/stsewd/tree-sitter-rst.git 4 | -------------------------------------------------------------------------------- /CONTRIBUTING.md: -------------------------------------------------------------------------------- 1 | # How to contribute 2 | 3 | Currently most of the community organisation is in issue #1. 4 | Subscribe to it for more news. 5 | 6 | # Try and complain 7 | 8 | The repository is still in it's early stage and might not be usable unless you 9 | like figuring things out. Nothing is in it's final form and if something is 10 | weird it likely need to be fixed. 11 | 12 | First things is to try to follow instructions in the readme and open issues if 13 | something is incorrect or hard to understand. 14 | -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- 1 | The MIT License (MIT) 2 | 3 | Copyright (c) 2020 Matthias Bussonnier 4 | 5 | Permission is hereby granted, free of charge, to any person obtaining a copy 6 | of this software and associated documentation files (the "Software"), to deal 7 | in the Software without restriction, including without limitation the rights 8 | to use, copy, modify, merge, publish, distribute, sublicense, and/or sell 9 | copies of the Software, and to permit persons to whom the Software is 10 | furnished to do so, subject to the following conditions: 11 | 12 | The above copyright notice and this permission notice shall be included in 13 | all copies or substantial portions of the Software. 14 | 15 | THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR 16 | IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, 17 | FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE 18 | AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER 19 | LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, 20 | OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN 21 | THE SOFTWARE. 22 | -------------------------------------------------------------------------------- /TODO: -------------------------------------------------------------------------------- 1 | - check parsing of IPython.lib.display.audio to make sure bullet list in parameters are ok. 2 | - numpy.core.shape_base._concatenate_shapes might not be complete. 3 | - numpy.errstate seem to have fields alternating between "numpy._ErrDict" and "numpy.dict", 4 | - numpy.histogram_bin_edges has a block math in _content.Notes.children.2.children.0.dd 5 | - numpy.histogram_bin_edges has math not rendered. 6 | - `numpy.core.shape_base._concatenate_shapes` improperly parse 7 | - Issues with `scipy.sparse.data._create_method..method` that likely get conflicting canonical name with another 8 | function tan/float 9 | -------------------------------------------------------------------------------- /assets/astropy.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jupyter/papyri/7b6ca7430751b9db9fd3def71dc6edfc3d528972/assets/astropy.gif -------------------------------------------------------------------------------- /assets/inline_graph.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jupyter/papyri/7b6ca7430751b9db9fd3def71dc6edfc3d528972/assets/inline_graph.png -------------------------------------------------------------------------------- /assets/local_graph_zeroes.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jupyter/papyri/7b6ca7430751b9db9fd3def71dc6edfc3d528972/assets/local_graph_zeroes.png -------------------------------------------------------------------------------- /assets/papyri-logo 2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jupyter/papyri/7b6ca7430751b9db9fd3def71dc6edfc3d528972/assets/papyri-logo 2.png -------------------------------------------------------------------------------- /assets/papyri-logo-white-silhouete.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jupyter/papyri/7b6ca7430751b9db9fd3def71dc6edfc3d528972/assets/papyri-logo-white-silhouete.png -------------------------------------------------------------------------------- /assets/papyri-nav.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jupyter/papyri/7b6ca7430751b9db9fd3def71dc6edfc3d528972/assets/papyri-nav.gif -------------------------------------------------------------------------------- /assets/vs_math.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jupyter/papyri/7b6ca7430751b9db9fd3def71dc6edfc3d528972/assets/vs_math.png -------------------------------------------------------------------------------- /codecov.yml: -------------------------------------------------------------------------------- 1 | coverage: 2 | status: 3 | patch: off 4 | project: 5 | default: false 6 | library: 7 | target: auto 8 | paths: ['!.*/tests/.*'] 9 | threshold: 0.1% 10 | tests: 11 | target: auto 12 | paths: ['.*/tests/.*'] 13 | threshold: 0.1% 14 | codecov: 15 | require_ci_to_pass: false 16 | comment: false 17 | -------------------------------------------------------------------------------- /docs/crossrefs.rst: -------------------------------------------------------------------------------- 1 | .. _crossrefs: 2 | 3 | Crossrefs 4 | ========= 5 | 6 | This page is used to test crossrefs. 7 | You can go back to the :ref:`Index ` 8 | -------------------------------------------------------------------------------- /docs/examples/simple_plot.py: -------------------------------------------------------------------------------- 1 | import matplotlib.pyplot as plt 2 | import numpy as np 3 | 4 | 5 | fig, ax = plt.subplots() 6 | 7 | x = np.arange(0, 10, 0.1) - 5 8 | y = np.sin(x) 9 | 10 | ax.plot(x, y) 11 | ax.plot(y, x) 12 | -------------------------------------------------------------------------------- /docs/index.rst: -------------------------------------------------------------------------------- 1 | .. _index: 2 | 3 | Papyri 4 | ====== 5 | 6 | 7 | .. toctree:: 8 | 9 | crossrefs 10 | 11 | Welcome to Papyri narrative docs. 12 | 13 | This show that papyri can support narrative docs as well as API docs, 14 | though for the time being API docs are better supported. 15 | 16 | If you find issues feel free to `Open and issue on GitHub `__. 17 | 18 | If you are working only on API docs, you can use ``papyri gen --no-api``, to skip the API generation 19 | part. Though be aware that some of the cross linking features will not work. 20 | 21 | .. _examples: 22 | 23 | Examples 24 | -------- 25 | 26 | These are examples of various RST constructs, mostly as a visual test they render 27 | correctly (or not yet). 28 | 29 | 30 | Lists 31 | ----- 32 | 33 | Enumerated lists 34 | ~~~~~~~~~~~~~~~~ 35 | 36 | 1. item 1 37 | 2. item 2 38 | 2. item 3 39 | 40 | 41 | 42 | Bullet Lists 43 | ~~~~~~~~~~~~ 44 | 45 | - Item 46 | - other item 47 | - another one 48 | 49 | 50 | Headers 51 | ------- 52 | 53 | Header 3 54 | ~~~~~~~~ 55 | 56 | Header 4 57 | ^^^^^^^^ 58 | 59 | Header 5 60 | ```````` 61 | 62 | 63 | Directives 64 | ----------- 65 | 66 | Note that directive are not a thing in themselves, and convert to other kind of nodes, 67 | when they are not understood they are currently rendered raw, but will be an error 68 | 69 | 70 | 71 | .. warning:: no title 72 | 73 | This is a warning 74 | 75 | .. versionadded:: 1.2.3 76 | 77 | This was added in version 1.2.3 78 | 79 | .. versionchanged:: 1.2.3 80 | 81 | This was changed in version 1.2.3 82 | 83 | You can now do:: 84 | 85 | >>> This 86 | 87 | Also: 88 | 89 | - That 90 | - Or this 91 | - Or that. 92 | 93 | 94 | 95 | .. currentmodule:: not handled 96 | 97 | .. seealso:: not handled 98 | 99 | .. highlight:: not handled 100 | 101 | .. code:: 102 | 103 | Code block (to be done) 104 | 105 | 106 | This will be math 107 | 108 | 109 | .. math:: 110 | 111 | \int_0^\infty f(x) dx 112 | 113 | -------------------------------------------------------------------------------- /examples/IPython.toml: -------------------------------------------------------------------------------- 1 | [global] 2 | module = 'IPython' 3 | logo = "img/ipython-logo.png" 4 | exec_failure = "fallback" 5 | docs_path = "~/dev/IPython/docs/source" 6 | execute_doctests = true 7 | execute_exclude_patterns = [ 8 | 'IPython.lib.display:Audio', 9 | 'IPython.core.display_functions:display' 10 | ] 11 | exclude = [] 12 | [global.expected_errors] 13 | IncorrectInternalDocsLen = [ 14 | "IPython.core.magics.namespace:NamespaceMagics.xdel", 15 | ] 16 | [global.implied_imports] 17 | get_ipython = 'IPython:get_ipython' 18 | 19 | 20 | [meta] 21 | github_slug = 'IPython/IPython' 22 | tag = '8.2.0' 23 | pypi = 'ipython' 24 | homepage = 'https://ipython.org/' 25 | docspage = 'https://ipython.readthedocs.org/' 26 | -------------------------------------------------------------------------------- /examples/astropy.toml: -------------------------------------------------------------------------------- 1 | [global] 2 | module = 'astropy' 3 | logo = "img/astropy_project_logo.svg" 4 | exclude = [ 5 | # VisitTargetNotImplementedError 6 | "astropy.utils.data:download_file", 7 | #"ExecError-": [ 8 | "astropy.utils.introspection:find_current_module", 9 | "astropy.utils.misc:NumpyRNGContext", 10 | "astropy.utils.decorators:classproperty", 11 | "astropy.utils.decorators:deprecated_renamed_argument", 12 | "astropy.utils.decorators:format_doc", 13 | "astropy.logger:AstropyLogger.log_to_file", 14 | "astropy.logger:AstropyLogger.log_to_list", 15 | "astropy.tests.runner:TestRunnerBase", 16 | "astropy.utils.compat.misc:override__dir__", 17 | "astropy.utils.data:get_pkg_data_filename", 18 | "astropy.utils.data:get_pkg_data_filenames", 19 | "astropy.utils.data:get_pkg_data_fileobj", 20 | "astropy.utils.data:get_pkg_data_fileobjs", 21 | # tree sitter don't like the " `Cards`s 22 | "astropy.io.fits.hdu.base:_CorruptedHDU", 23 | "astropy.extern.configobj.validate:Validator.check", 24 | ] 25 | submodules = [ "io", "io.fits",] 26 | -------------------------------------------------------------------------------- /examples/dask.toml: -------------------------------------------------------------------------------- 1 | [global] 2 | module = 'dask' 3 | logo = "img/dask-logo.png" 4 | submodules = ["array"] 5 | exclude = [ "dask.utils:Dispatch", 6 | # numpydoc parse error 7 | 'dask.typing:_NoDefault', 8 | # target not implemented 9 | 'dask.highlevelgraph:HighLevelGraph.visualize', 10 | 'dask.array.overlap:map_overlap', 11 | # AssertionError : Serialisation proble 12 | "dask.array.routines:matmul", 13 | "dask.array.routines:rot90", 14 | # visit_target not implemented 15 | "dask.array.reshape:reshape", 16 | "dask.array.tiledb_io:to_tiledb", 17 | # visit_comment not implemented 18 | "dask.array.routines:unique", 19 | # misc aseert 20 | "dask.base:replace_name_in_key", 21 | #"ExecError-": [ 22 | "dask.array.core:to_npy_stack", 23 | #"NumpydocError-": [ 24 | "dask.array.slicing:slice_array", 25 | # unbalanced backticks, 26 | # need fix in numpy 27 | "dask.array.ufunc:frexp", # https://github.com/numpy/numpy/pull/21020 28 | # imbalanced backticks, need dask fix. https://github.com/dask/dask/pull/8693 29 | "dask.array.reductions:cumreduction", 30 | # "ErrorHelper1-": [ 31 | "dask.array.routines:tensordot", 32 | "dask.utils:tensordot", 33 | "dask.array.slicing:replace_ellipsis", 34 | "dask.array.overlap:sliding_window_view", 35 | "dask.array.overlap:ensure_minimum_chunksize", 36 | "dask.array.overlap:overlap", 37 | "dask.array.overlap:sliding_window_view" 38 | ] 39 | 40 | 41 | #docs_path = "~/dev/dask/docs/source" 42 | exec_failure = 'fallback' 43 | execute_doctests = false 44 | -------------------------------------------------------------------------------- /examples/distributed.toml: -------------------------------------------------------------------------------- 1 | [global] 2 | module = 'distributed' 3 | logo = "img/dask-logo.png" 4 | exclude = [ 5 | # misc 6 | "distributed.worker:Worker", 7 | "distributed.client:get_task_stream", 8 | "distributed.batched:BatchedSend", 9 | # imbalanced backticks https://github.com/dask/distributed/pull/5784 10 | "distributed.utils_comm:retry", 11 | "distributed._concurrent_futures_thread:ThreadPoolExecutor.__init__", 12 | #"ErrorHelper1-": [ 13 | "distributed.protocol.core:dumps", 14 | "distributed.diagnostics.progress:MultiProgress", 15 | "distributed.diagnostics.progress:Progress", 16 | "distributed.shuffle._disk:DiskShardsBuffer", 17 | "distributed.shuffle._comms:CommShardsBuffer", 18 | ] #docs_path = "~/dev/dask/docs/source" 19 | exec_failure = 'fallback' 20 | execute_doctests = false 21 | 22 | [global.expected_errors] 23 | NumpydocParseError = [ 24 | "distributed.client:default_client", 25 | "distributed.utils:offload", 26 | "distributed.metrics:ContextMeter", 27 | "distributed.utils:run_in_executor_with_context", 28 | ] 29 | -------------------------------------------------------------------------------- /examples/gallery1.py: -------------------------------------------------------------------------------- 1 | import matplotlib.pyplot as plt 2 | import numpy as np 3 | 4 | 5 | fig, ax = plt.subplots() 6 | x = np.arange(0, 10, 0.1) 7 | ax.plot(x, np.sin(x)) 8 | ax.plot(x, np.cos(x)) 9 | 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-------------------------------------------------------------------------------- /examples/networkx.toml: -------------------------------------------------------------------------------- 1 | [global] 2 | module = 'networkx' 3 | execute_exclude_patterns = [] 4 | 5 | submodules = [] 6 | 7 | # docs_path = '~/dev/numpy/doc/source' 8 | 9 | execute_doctests = true 10 | exclude_jedi = ['networkx.algorithms.planarity.PlanarEmbedding'] 11 | exec_failure = 'fallback' 12 | source = 'https://github.com/networkx/networkx' 13 | exclude = [ 14 | ] 15 | logo = './img/nx.png' 16 | [meta] 17 | github_slug = 'networkx/networkx' 18 | tag = 'networkx-2.7.1' 19 | pypi = 'networkx' 20 | homepage = 'https://networkx.org/' 21 | docspage = 'https://networkx.org/documentation/stable/' 22 | [global.implied_imports] 23 | nx = 'networkx' 24 | it = 'itertools' 25 | 26 | [global.expected_errors] 27 | VisitCitationReferenceNotImplementedError = [ 28 | "networkx.algorithms.distance_measures:barycenter", 29 | "networkx.generators.atlas:graph_atlas_g", 30 | "networkx.algorithms.graphical:is_graphical", 31 | "networkx.algorithms.graphical:is_valid_degree_sequence_erdos_gallai", 32 | "networkx.algorithms.graphical:is_valid_degree_sequence_havel_hakimi", 33 | ] 34 | WrongTypeAtField = [ 35 | "networkx.generators.geometric:geographical_threshold_graph", 36 | "networkx.generators.geometric:waxman_graph", 37 | "networkx.algorithms.cycles:_johnson_cycle_search", 38 | ] 39 | IncorrectInternalDocsLen = [ 40 | "networkx.algorithms.community.louvain:louvain_communities", 41 | ] 42 | -------------------------------------------------------------------------------- /examples/pandas.toml: -------------------------------------------------------------------------------- 1 | [global] 2 | module = 'pandas' 3 | logo = 'img/logo_pandas.png' 4 | exec_failure = "fallback" 5 | submodules = [] 6 | exclude = ["" 7 | ] 8 | execute_doctests = false 9 | [pandas.expected_errors] 10 | IncorrectInternalDocsLen = [ 11 | "pandas.core.indexes.period:PeriodIndex.asof_locs", 12 | "pandas.core.indexes.range:RangeIndex._extended_gcd", 13 | "pandas.core.missing:_rolling_window", 14 | "pandas.io.html:_HtmlFrameParser", 15 | "pandas.io.stata:_dtype_to_default_stata_fmt", 16 | "pandas.io.pytables:Selection.generate", 17 | "pandas.core.internals.managers:BaseBlockManager.take", 18 | ] 19 | NumpydocParseError = [ 20 | "pandas._config.config:CallableDynamicDoc", 21 | "pandas._libs.properties:AxisProperty", 22 | "pandas._libs.properties:CachedProperty", 23 | "pandas.core.arraylike:array_ufunc", 24 | "pandas.core.arraylike:array_ufunc", 25 | "pandas.core.generic:NDFrame.isna", 26 | "pandas.core.generic:NDFrame.isnull", 27 | "pandas.core.generic:NDFrame.notna", 28 | "pandas.core.generic:NDFrame.notnull", 29 | "pandas.core.generic:NDFrame.replace", 30 | "pandas.core.generic:NDFrame.set_axis", 31 | "pandas.io.pytables:Table", 32 | ] 33 | AssertionError = [ 34 | "pandas.core.apply:_make_unique_kwarg_list", 35 | "pandas.core.apply:relabel_result", 36 | ] 37 | ValueError = [ 38 | "pandas.io.gbq:read_gbq", 39 | ] 40 | WrongTypeAtField = [ 41 | "pandas.io.gbq:read_gbq", 42 | "pandas.io.pickle:to_pickle", 43 | "pandas.core.frame:DataFrame.to_gbq", 44 | "pandas.core.resample:Resampler.interpolate", 45 | "pandas.core.generic:NDFrame.to_pickle", 46 | ] 47 | 48 | [global.implied_imports] 49 | pd = 'pandas' 50 | -------------------------------------------------------------------------------- /examples/papyri.toml: -------------------------------------------------------------------------------- 1 | [global] 2 | module = 'papyri' 3 | submodules = ['examples'] 4 | examples_folder = '~/dev/papyri/docs/examples/' 5 | logo = "../papyri-logo.png" 6 | docs_path = "~/dev/papyri/docs" 7 | execute_doctests = true 8 | exec_failure = 'raise' 9 | exclude= ["papyri.utils:FullQual","papyri.utils:Cannonical" ] 10 | [global.directives] 11 | mydirective='papyri.examples:_mydirective_handler' 12 | 13 | 14 | [meta] 15 | github_slug = 'jupyter/papyri' 16 | tag = '{{version}}' 17 | pypi = 'papyri' 18 | -------------------------------------------------------------------------------- /examples/skimage.toml: -------------------------------------------------------------------------------- 1 | [global] 2 | module = 'skimage' 3 | logo = "img/skimage-logo.png" 4 | exec_failure = "fallback" 5 | submodules = [ "morphology", "color", "data", "draw", "exposure", "io", "graph", "segmentation", "transform", "util"] 6 | exclude = [ 7 | ] 8 | exclude_jedi = ['skimage.viewer.plugins.base.Plugin'] 9 | [global.expected_errors] 10 | WrongTypeAtField = [ 11 | "skimage.morphology._skeletonize:medial_axis", 12 | ] 13 | VisitCitationReferenceNotImplementedError = [ 14 | "skimage.morphology._skeletonize:skeletonize", 15 | "skimage.morphology._skeletonize:skeletonize_3d", 16 | "skimage.morphology._skeletonize:skeletonize_2d", 17 | "skimage.morphology._skeletonize_3d_cy", 18 | ] 19 | -------------------------------------------------------------------------------- /examples/xarray.toml: -------------------------------------------------------------------------------- 1 | [global] 2 | module = 'xarray' 3 | execute_exclude_patterns = [] 4 | 5 | submodules = [] 6 | 7 | 8 | execute_doctests = true 9 | exclude = [ 10 | ] 11 | exec_failure = 'fallback' 12 | source = 'https://github.com/pydata/xarray' 13 | logo = './img/xarray.png' 14 | early_error = false 15 | 16 | [meta] 17 | github_slug = 'pydata/xarray' 18 | tag = '2022.3.0' 19 | pypi = 'xarray' 20 | homepage = 'https://docs.xarray.dev/' 21 | docs = 'https://docs.xarray.dev/en/stable/' 22 | 23 | [global.implied_imports] 24 | xr = 'xarray' 25 | pd = 'pandas' 26 | 27 | 28 | [global.expected_errors] 29 | AssertionError = [ 30 | "xarray.core.dataarray:DataArray.drop_vars", 31 | "xarray.core.dataarray:DataArray.convert_calendar", 32 | "xarray.core.dataset:Dataset.convert_calendar", 33 | ] 34 | -------------------------------------------------------------------------------- /frontend/README.md: -------------------------------------------------------------------------------- 1 | # attempt to build a JS rendered based on Myst for papyri. 2 | 3 | ``` 4 | $ npm run build 5 | ``` 6 | 7 | Should put the js/css artifacts in ./build/static/ 8 | 9 | -------------------------------------------------------------------------------- /frontend/craco.config.js: -------------------------------------------------------------------------------- 1 | module.exports = { 2 | webpack: { 3 | configure: { 4 | module: { 5 | rules: [ 6 | { 7 | test: /\.m?js$/, 8 | resolve: { 9 | fullySpecified: false, 10 | }, 11 | }, 12 | ], 13 | }, 14 | }, 15 | }, 16 | }; 17 | -------------------------------------------------------------------------------- /frontend/package.json: -------------------------------------------------------------------------------- 1 | { 2 | "name": "papyri-frontend", 3 | "version": "0.1.0", 4 | "private": true, 5 | "dependencies": { 6 | "@testing-library/jest-dom": "^5.17.0", 7 | "@testing-library/react": "^13.4.0", 8 | "@testing-library/user-event": "^13.5.0", 9 | "mdast-util-from-markdown": "^2.0.0", 10 | "myst-to-react": "^0.5.17", 11 | "prettier": "^3.0.3", 12 | "react": "^18.2.0", 13 | "react-dom": "^18.2.0", 14 | "react-scripts": "5.0.1", 15 | "unist-util-visit": "^5.0.0", 16 | "web-vitals": "^2.1.4" 17 | }, 18 | "scripts": { 19 | "start": "craco start", 20 | "build": "BUILD_PATH='../papyri/app/' craco build", 21 | "test": "craco test", 22 | "eject": "react-scripts eject" 23 | }, 24 | "eslintConfig": { 25 | "extends": [ 26 | "react-app", 27 | "react-app/jest" 28 | ] 29 | }, 30 | "browserslist": { 31 | "production": [ 32 | ">0.2%", 33 | "not dead", 34 | "not op_mini all" 35 | ], 36 | "development": [ 37 | "last 1 chrome version", 38 | "last 1 firefox version", 39 | "last 1 safari version" 40 | ] 41 | }, 42 | "devDependencies": { 43 | "@craco/craco": "^7.1.0" 44 | } 45 | } 46 | -------------------------------------------------------------------------------- /frontend/public/index.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 11 | 12 | 13 | -------------------------------------------------------------------------------- /frontend/src/index.css: -------------------------------------------------------------------------------- 1 | body { 2 | margin: 0; 3 | font-family: -apple-system, BlinkMacSystemFont, 'Segoe UI', 'Roboto', 'Oxygen', 4 | 'Ubuntu', 'Cantarell', 'Fira Sans', 'Droid Sans', 'Helvetica Neue', 5 | sans-serif; 6 | -webkit-font-smoothing: antialiased; 7 | -moz-osx-font-smoothing: grayscale; 8 | } 9 | 10 | code { 11 | font-family: source-code-pro, Menlo, Monaco, Consolas, 'Courier New', 12 | monospace; 13 | } 14 | -------------------------------------------------------------------------------- /frontend/src/setupTests.js: -------------------------------------------------------------------------------- 1 | // jest-dom adds custom jest matchers for asserting on DOM nodes. 2 | // allows you to do things like: 3 | // expect(element).toHaveTextContent(/react/i) 4 | // learn more: https://github.com/testing-library/jest-dom 5 | import '@testing-library/jest-dom'; 6 | -------------------------------------------------------------------------------- /frontend/webpack.config.js: -------------------------------------------------------------------------------- 1 | module.exports = { 2 | output: { 3 | filename: 'your-custom-name.js', // Set your custom output filename here 4 | }, 5 | }; 6 | -------------------------------------------------------------------------------- /of_interest: -------------------------------------------------------------------------------- 1 | dask.delayed.delayed : multi paragraph in one parameter. 2 | IPython.core.display.Video.__init__: Block Verbatim in params ? 3 | IPython.core.interactiveshell.InteractiveShell.complete: DefListItem 4 | matplotlib.transforms.Bbox: parsing of example is completely incorrect. 5 | matplotlib.axes._axes.Axes.text: misparse example as well. 6 | IPython.core.completer.Completion: item list 7 | matplotlib.figure.Figure.add_subplot: custom double dot example. 8 | matplotlib.colors: unnumbered list with indent. 9 | matplotlib.colors: reference via `.. _palettable: value` and autolink `paletable_` 10 | numpy.npv: hase warning sections. 11 | scipy.signal.ltisys.bode: multiple figure 12 | scipy.signal.barthann: multiple figures 13 | -------------------------------------------------------------------------------- /papyri-lab/.copier-answers.yml: -------------------------------------------------------------------------------- 1 | # Changes here will be overwritten by Copier; NEVER EDIT MANUALLY 2 | _commit: v4.2.4 3 | _src_path: https://github.com/jupyterlab/extension-template 4 | author_email: bussonniermatthias@gmail.com 5 | author_name: Matthias Bussonnier 6 | data_format: string 7 | file_extension: '' 8 | has_binder: false 9 | has_settings: true 10 | kind: frontend 11 | labextension_name: papyri-lab 12 | mimetype: '' 13 | mimetype_name: '' 14 | project_short_description: A JupyterLab extension for papyri 15 | python_name: papyri_lab 16 | repository: https://github.com/jupyter/papyri 17 | test: true 18 | viewer_name: '' 19 | 20 | -------------------------------------------------------------------------------- /papyri-lab/.github/workflows/check-release.yml: -------------------------------------------------------------------------------- 1 | name: Check Release 2 | on: 3 | push: 4 | branches: ["main"] 5 | pull_request: 6 | branches: ["*"] 7 | 8 | jobs: 9 | check_release: 10 | runs-on: ubuntu-latest 11 | steps: 12 | - name: Checkout 13 | uses: actions/checkout@v3 14 | - name: Base Setup 15 | uses: jupyterlab/maintainer-tools/.github/actions/base-setup@v1 16 | - name: Check Release 17 | uses: jupyter-server/jupyter_releaser/.github/actions/check-release@v2 18 | with: 19 | 20 | token: ${{ secrets.GITHUB_TOKEN }} 21 | 22 | - name: Upload Distributions 23 | uses: actions/upload-artifact@v3 24 | with: 25 | name: papyri_lab-releaser-dist-${{ github.run_number }} 26 | path: .jupyter_releaser_checkout/dist 27 | -------------------------------------------------------------------------------- /papyri-lab/.github/workflows/prep-release.yml: -------------------------------------------------------------------------------- 1 | name: "Step 1: Prep Release" 2 | on: 3 | workflow_dispatch: 4 | inputs: 5 | version_spec: 6 | description: "New Version Specifier" 7 | default: "next" 8 | required: false 9 | branch: 10 | description: "The branch to target" 11 | required: false 12 | post_version_spec: 13 | description: "Post Version Specifier" 14 | required: false 15 | since: 16 | description: "Use PRs with activity since this date or git reference" 17 | required: false 18 | since_last_stable: 19 | description: "Use PRs with activity since the last stable git tag" 20 | required: false 21 | type: boolean 22 | jobs: 23 | prep_release: 24 | runs-on: ubuntu-latest 25 | steps: 26 | - uses: jupyterlab/maintainer-tools/.github/actions/base-setup@v1 27 | 28 | - name: Prep Release 29 | id: prep-release 30 | uses: jupyter-server/jupyter_releaser/.github/actions/prep-release@v2 31 | with: 32 | token: ${{ secrets.ADMIN_GITHUB_TOKEN }} 33 | version_spec: ${{ github.event.inputs.version_spec }} 34 | post_version_spec: ${{ github.event.inputs.post_version_spec }} 35 | branch: ${{ github.event.inputs.branch }} 36 | since: ${{ github.event.inputs.since }} 37 | since_last_stable: ${{ github.event.inputs.since_last_stable }} 38 | 39 | - name: "** Next Step **" 40 | run: | 41 | echo "Optional): Review Draft Release: ${{ steps.prep-release.outputs.release_url }}" 42 | -------------------------------------------------------------------------------- /papyri-lab/.github/workflows/publish-release.yml: -------------------------------------------------------------------------------- 1 | name: "Step 2: Publish Release" 2 | on: 3 | workflow_dispatch: 4 | inputs: 5 | branch: 6 | description: "The target branch" 7 | required: false 8 | release_url: 9 | description: "The URL of the draft GitHub release" 10 | required: false 11 | steps_to_skip: 12 | description: "Comma separated list of steps to skip" 13 | required: false 14 | 15 | jobs: 16 | publish_release: 17 | runs-on: ubuntu-latest 18 | permissions: 19 | # This is useful if you want to use PyPI trusted publisher 20 | # and NPM provenance 21 | id-token: write 22 | steps: 23 | - uses: jupyterlab/maintainer-tools/.github/actions/base-setup@v1 24 | 25 | - name: Populate Release 26 | id: populate-release 27 | uses: jupyter-server/jupyter_releaser/.github/actions/populate-release@v2 28 | with: 29 | token: ${{ secrets.ADMIN_GITHUB_TOKEN }} 30 | branch: ${{ github.event.inputs.branch }} 31 | release_url: ${{ github.event.inputs.release_url }} 32 | steps_to_skip: ${{ github.event.inputs.steps_to_skip }} 33 | 34 | - name: Finalize Release 35 | id: finalize-release 36 | env: 37 | # The following are needed if you use legacy PyPI set up 38 | # PYPI_TOKEN: ${{ secrets.PYPI_TOKEN }} 39 | # PYPI_TOKEN_MAP: ${{ secrets.PYPI_TOKEN_MAP }} 40 | # TWINE_USERNAME: __token__ 41 | NPM_TOKEN: ${{ secrets.NPM_TOKEN }} 42 | uses: jupyter-server/jupyter_releaser/.github/actions/finalize-release@v2 43 | with: 44 | token: ${{ secrets.ADMIN_GITHUB_TOKEN }} 45 | release_url: ${{ steps.populate-release.outputs.release_url }} 46 | 47 | - name: "** Next Step **" 48 | if: ${{ success() }} 49 | run: | 50 | echo "Verify the final release" 51 | echo ${{ steps.finalize-release.outputs.release_url }} 52 | 53 | - name: "** Failure Message **" 54 | if: ${{ failure() }} 55 | run: | 56 | echo "Failed to Publish the Draft Release Url:" 57 | echo ${{ steps.populate-release.outputs.release_url }} 58 | -------------------------------------------------------------------------------- /papyri-lab/.prettierignore: -------------------------------------------------------------------------------- 1 | node_modules 2 | **/node_modules 3 | **/lib 4 | **/package.json 5 | !/package.json 6 | papyri_lab 7 | -------------------------------------------------------------------------------- /papyri-lab/.yarnrc.yml: -------------------------------------------------------------------------------- 1 | nodeLinker: node-modules 2 | -------------------------------------------------------------------------------- /papyri-lab/CHANGELOG.md: -------------------------------------------------------------------------------- 1 | # Changelog 2 | 3 | 4 | 5 | 6 | -------------------------------------------------------------------------------- /papyri-lab/LICENSE: -------------------------------------------------------------------------------- 1 | BSD 3-Clause License 2 | 3 | Copyright (c) 2023, Matthias Bussonnier 4 | All rights reserved. 5 | 6 | Redistribution and use in source and binary forms, with or without 7 | modification, are permitted provided that the following conditions are met: 8 | 9 | 1. Redistributions of source code must retain the above copyright notice, this 10 | list of conditions and the following disclaimer. 11 | 12 | 2. Redistributions in binary form must reproduce the above copyright notice, 13 | this list of conditions and the following disclaimer in the documentation 14 | and/or other materials provided with the distribution. 15 | 16 | 3. Neither the name of the copyright holder nor the names of its 17 | contributors may be used to endorse or promote products derived from 18 | this software without specific prior written permission. 19 | 20 | THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 21 | AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 22 | IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE 23 | DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE 24 | FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL 25 | DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR 26 | SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER 27 | CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, 28 | OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE 29 | OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. 30 | -------------------------------------------------------------------------------- /papyri-lab/babel.config.js: -------------------------------------------------------------------------------- 1 | module.exports = require('@jupyterlab/testutils/lib/babel.config'); 2 | -------------------------------------------------------------------------------- /papyri-lab/conftest.py: -------------------------------------------------------------------------------- 1 | import pytest 2 | 3 | pytest_plugins = ("pytest_jupyter.jupyter_server",) 4 | 5 | 6 | @pytest.fixture 7 | def jp_server_config(jp_server_config): 8 | return {"ServerApp": {"jpserver_extensions": {"papyri_lab": True}}} 9 | -------------------------------------------------------------------------------- /papyri-lab/install.json: -------------------------------------------------------------------------------- 1 | { 2 | "packageManager": "python", 3 | "packageName": "papyri_lab", 4 | "uninstallInstructions": "Use your Python package manager (pip, conda, etc.) to uninstall the package papyri_lab" 5 | } 6 | -------------------------------------------------------------------------------- /papyri-lab/jest.config.js: -------------------------------------------------------------------------------- 1 | const jestJupyterLab = require('@jupyterlab/testutils/lib/jest-config'); 2 | 3 | const esModules = [ 4 | '@codemirror', 5 | '@jupyter/ydoc', 6 | '@jupyterlab/', 7 | 'lib0', 8 | 'nanoid', 9 | 'vscode-ws-jsonrpc', 10 | 'y-protocols', 11 | 'y-websocket', 12 | 'yjs' 13 | ].join('|'); 14 | 15 | const baseConfig = jestJupyterLab(__dirname); 16 | 17 | module.exports = { 18 | ...baseConfig, 19 | automock: false, 20 | collectCoverageFrom: [ 21 | 'src/**/*.{ts,tsx}', 22 | '!src/**/*.d.ts', 23 | '!src/**/.ipynb_checkpoints/*' 24 | ], 25 | coverageReporters: ['lcov', 'text'], 26 | testRegex: 'src/.*/.*.spec.ts[x]?$', 27 | transformIgnorePatterns: [`/node_modules/(?!${esModules}).+`] 28 | }; 29 | -------------------------------------------------------------------------------- /papyri-lab/jupyter-config/server-config/papyri_lab.json: -------------------------------------------------------------------------------- 1 | { 2 | "ServerApp": { 3 | "jpserver_extensions": { 4 | "papyri_lab": true 5 | } 6 | } 7 | } 8 | -------------------------------------------------------------------------------- /papyri-lab/papyri_lab/__init__.py: -------------------------------------------------------------------------------- 1 | try: 2 | from ._version import __version__ 3 | except ModuleNotFoundError: 4 | # Fallback when using the package in dev mode without installing 5 | # in editable mode with pip. It is highly recommended to install 6 | # the package from a stable release or in editable mode: 7 | # https://pip.pypa.io/en/stable/topics/local-project-installs/#editable-installs 8 | import warnings 9 | 10 | warnings.warn("Importing 'papyri_lab' outside a proper installation.") 11 | __version__ = "dev" 12 | from .handlers import setup_handlers 13 | 14 | 15 | def _jupyter_labextension_paths(): 16 | return [{"src": "labextension", "dest": "papyri-lab"}] 17 | 18 | 19 | def _jupyter_server_extension_points(): 20 | return [{"module": "papyri_lab"}] 21 | 22 | 23 | def _load_jupyter_server_extension(server_app): 24 | """Registers the API handler to receive HTTP requests from the frontend extension. 25 | 26 | Parameters 27 | ---------- 28 | server_app: jupyterlab.labapp.LabApp 29 | JupyterLab application instance 30 | """ 31 | setup_handlers(server_app.web_app) 32 | name = "papyri_lab" 33 | server_app.log.info(f"Registered {name} server extension") 34 | -------------------------------------------------------------------------------- /papyri-lab/papyri_lab/handlers.py: -------------------------------------------------------------------------------- 1 | import json 2 | 3 | from jupyter_server.base.handlers import APIHandler 4 | from jupyter_server.utils import url_path_join 5 | import tornado 6 | 7 | from papyri.crosslink import GraphStore, ingest_dir 8 | from papyri.render import HtmlRenderer, encoder 9 | 10 | 11 | class RouteHandler(APIHandler): 12 | # The following decorator should be present on all verb methods (head, get, post, 13 | # patch, put, delete, options) to ensure only authorized user can request the 14 | # Jupyter server 15 | @tornado.web.authenticated 16 | def post(self): 17 | body_data = self.request.body.decode() 18 | g = GraphStore(ingest_dir) 19 | self.log.error(body_data) 20 | candidates = [k for k in g.glob((None, None, None, body_data + "*"))] 21 | the_one = [k for k in candidates if k.path == body_data] 22 | 23 | renderer = HtmlRenderer(g, sidebar=False, prefix="/p/", trailing_html=False) 24 | if len(the_one) == 1: 25 | gbytes, backward, forward = g.get_all(the_one[0]) 26 | doc_blob = encoder.decode(gbytes) 27 | root = renderer._myst_root(doc_blob) 28 | body = root.to_dict() 29 | else: 30 | body = None 31 | 32 | self.finish( 33 | json.dumps( 34 | { 35 | "data": [c.path for c in candidates[:50]], 36 | "body": body, 37 | } 38 | ) 39 | ) 40 | 41 | @tornado.web.authenticated 42 | def get(self): 43 | g = GraphStore(ingest_dir) 44 | self.finish( 45 | json.dumps({"data": [k.path for k in g.glob((None, None, None, "p*"))]}) 46 | ) 47 | 48 | 49 | def setup_handlers(web_app): 50 | host_pattern = ".*$" 51 | 52 | base_url = web_app.settings["base_url"] 53 | route_pattern = url_path_join(base_url, "papyri-lab", "get-example") 54 | handlers = [(route_pattern, RouteHandler)] 55 | web_app.add_handlers(host_pattern, handlers) 56 | -------------------------------------------------------------------------------- /papyri-lab/papyri_lab/tests/__init__.py: -------------------------------------------------------------------------------- 1 | """Python unit tests for papyri_lab.""" 2 | -------------------------------------------------------------------------------- /papyri-lab/papyri_lab/tests/test_handlers.py: -------------------------------------------------------------------------------- 1 | import json 2 | 3 | 4 | async def test_get_example(jp_fetch): 5 | # When 6 | response = await jp_fetch("papyri-lab", "get-example") 7 | 8 | # Then 9 | assert response.code == 200 10 | payload = json.loads(response.body) 11 | assert "papyri" in payload["data"] 12 | assert len(payload["data"]) >= 400, "we have at least 400 papyri items" 13 | -------------------------------------------------------------------------------- /papyri-lab/schema/plugin.json: -------------------------------------------------------------------------------- 1 | { 2 | "jupyter.lab.shortcuts": [], 3 | "title": "papyri-lab", 4 | "description": "papyri-lab settings.", 5 | "type": "object", 6 | "properties": {}, 7 | "additionalProperties": false 8 | } 9 | -------------------------------------------------------------------------------- /papyri-lab/setup.py: -------------------------------------------------------------------------------- 1 | __import__("setuptools").setup() 2 | -------------------------------------------------------------------------------- /papyri-lab/src/__tests__/papyri_lab.spec.ts: -------------------------------------------------------------------------------- 1 | /** 2 | * Example of [Jest](https://jestjs.io/docs/getting-started) unit tests 3 | */ 4 | 5 | describe('papyri-lab', () => { 6 | it('should be tested', () => { 7 | expect(1 + 1).toEqual(2); 8 | }); 9 | }); 10 | -------------------------------------------------------------------------------- /papyri-lab/src/handler.ts: -------------------------------------------------------------------------------- 1 | import { URLExt } from '@jupyterlab/coreutils'; 2 | import { ServerConnection } from '@jupyterlab/services'; 3 | 4 | /** 5 | * Call the API extension 6 | * 7 | * @param endPoint API REST end point for the extension 8 | * @param init Initial values for the request 9 | * @returns The response body interpreted as JSON 10 | */ 11 | export async function requestAPI( 12 | endPoint = '', 13 | init: RequestInit = {} 14 | ): Promise { 15 | // Make request to Jupyter API 16 | const settings = ServerConnection.makeSettings(); 17 | const requestUrl = URLExt.join( 18 | settings.baseUrl, 19 | 'papyri-lab', // API Namespace 20 | endPoint 21 | ); 22 | 23 | let response: Response; 24 | try { 25 | response = await ServerConnection.makeRequest(requestUrl, init, settings); 26 | } catch (error) { 27 | throw new ServerConnection.NetworkError(error as any); 28 | } 29 | 30 | let data: any = await response.text(); 31 | 32 | if (data.length > 0) { 33 | try { 34 | data = JSON.parse(data); 35 | } catch (error) { 36 | console.log('Not a JSON response body.', response); 37 | } 38 | } 39 | 40 | if (!response.ok) { 41 | throw new ServerConnection.ResponseError(response, data.message || data); 42 | } 43 | 44 | return data; 45 | } 46 | -------------------------------------------------------------------------------- /papyri-lab/style/base.css: -------------------------------------------------------------------------------- 1 | /* 2 | See the JupyterLab Developer Guide for useful CSS Patterns: 3 | 4 | https://jupyterlab.readthedocs.io/en/stable/developer/css.html 5 | */ 6 | @import 'app.css'; 7 | 8 | div#papyri-browser { 9 | padding: 15px; 10 | } 11 | 12 | code { 13 | color: #db2777; 14 | font-weight: 400; 15 | font-size: 0.875em; 16 | } 17 | 18 | .not-implemented { 19 | border: 1px solid orange; 20 | } 21 | 22 | div#papyri-browser a:hover { 23 | text-decoration: underline; 24 | } 25 | 26 | #papyri-browser a { 27 | font-weight: bold; 28 | } 29 | 30 | #papyri-browser .view { 31 | overflow: scroll; 32 | height: 100%; 33 | } 34 | 35 | #papyri-browser { 36 | & span.signature-separator { 37 | white-space: pre; 38 | } 39 | 40 | & span.default-value { 41 | opacity: 30%; 42 | } 43 | & span.type-ann, 44 | & span.ret-ann { 45 | opacity: 30%; 46 | color: gray; 47 | } 48 | 49 | & span.param-block { 50 | white-space: pre; 51 | } 52 | } 53 | -------------------------------------------------------------------------------- /papyri-lab/style/index.css: -------------------------------------------------------------------------------- 1 | @import url('base.css'); 2 | -------------------------------------------------------------------------------- /papyri-lab/style/index.js: -------------------------------------------------------------------------------- 1 | import './base.css'; 2 | -------------------------------------------------------------------------------- /papyri-lab/style/tailwind.css: -------------------------------------------------------------------------------- 1 | @tailwind components; 2 | @tailwind utilities; 3 | 4 | @import '@myst-theme/styles/details.css'; 5 | @import '@myst-theme/styles/citations.css'; 6 | @import '@myst-theme/styles/figures.css'; 7 | @import '@myst-theme/styles/text-spacers.css'; 8 | @import '@myst-theme/styles/code-highlight.css'; 9 | @import '@myst-theme/styles/math.css'; 10 | @import '@myst-theme/styles/cross-references.css'; 11 | @import '@myst-theme/styles/block-styles.css'; 12 | @import '@myst-theme/styles/tasklists.css'; 13 | @import '@myst-theme/styles/hover.css'; 14 | -------------------------------------------------------------------------------- /papyri-lab/tsconfig.json: -------------------------------------------------------------------------------- 1 | { 2 | "compilerOptions": { 3 | "allowSyntheticDefaultImports": true, 4 | "composite": true, 5 | "declaration": true, 6 | "esModuleInterop": true, 7 | "incremental": true, 8 | "jsx": "react", 9 | "module": "esnext", 10 | "moduleResolution": "node", 11 | "noEmitOnError": true, 12 | "noImplicitAny": true, 13 | "noUnusedLocals": true, 14 | "preserveWatchOutput": true, 15 | "resolveJsonModule": true, 16 | "outDir": "lib", 17 | "rootDir": "src", 18 | "strict": true, 19 | "strictNullChecks": true, 20 | "target": "ES2018" 21 | }, 22 | "include": ["src/*"] 23 | } 24 | -------------------------------------------------------------------------------- /papyri-lab/tsconfig.test.json: -------------------------------------------------------------------------------- 1 | { 2 | "extends": "./tsconfig", 3 | "compilerOptions": { 4 | "types": ["jest"] 5 | } 6 | } 7 | -------------------------------------------------------------------------------- /papyri-lab/ui-tests/jupyter_server_test_config.py: -------------------------------------------------------------------------------- 1 | """Server configuration for integration tests. 2 | 3 | !! Never use this configuration in production because it 4 | opens the server to the world and provide access to JupyterLab 5 | JavaScript objects through the global window variable. 6 | """ 7 | from jupyterlab.galata import configure_jupyter_server 8 | 9 | configure_jupyter_server(c) # type: ignore [name-defined] 10 | 11 | # Uncomment to set server log level to debug level 12 | # c.ServerApp.log_level = "DEBUG" 13 | -------------------------------------------------------------------------------- /papyri-lab/ui-tests/package.json: -------------------------------------------------------------------------------- 1 | { 2 | "name": "papyri-lab-ui-tests", 3 | "version": "1.0.0", 4 | "description": "JupyterLab papyri-lab Integration Tests", 5 | "private": true, 6 | "scripts": { 7 | "start": "jupyter lab --config jupyter_server_test_config.py", 8 | "test": "jlpm playwright test", 9 | "test:update": "jlpm playwright test --update-snapshots" 10 | }, 11 | "devDependencies": { 12 | "@jupyterlab/galata": "^5.0.5", 13 | "@playwright/test": "^1.37.0" 14 | } 15 | } 16 | -------------------------------------------------------------------------------- /papyri-lab/ui-tests/playwright.config.js: -------------------------------------------------------------------------------- 1 | /** 2 | * Configuration for Playwright using default from @jupyterlab/galata 3 | */ 4 | const baseConfig = require('@jupyterlab/galata/lib/playwright-config'); 5 | 6 | module.exports = { 7 | ...baseConfig, 8 | webServer: { 9 | command: 'jlpm start', 10 | url: 'http://localhost:8888/lab', 11 | timeout: 120 * 1000, 12 | reuseExistingServer: !process.env.CI 13 | } 14 | }; 15 | -------------------------------------------------------------------------------- /papyri-lab/ui-tests/tests/papyri_lab.spec.ts: -------------------------------------------------------------------------------- 1 | import { expect, test } from '@jupyterlab/galata'; 2 | 3 | /** 4 | * Don't load JupyterLab webpage before running the tests. 5 | * This is required to ensure we capture all log messages. 6 | */ 7 | test.use({ autoGoto: false }); 8 | 9 | test('should emit an activation console message', async ({ page }) => { 10 | const logs: string[] = []; 11 | 12 | page.on('console', message => { 13 | logs.push(message.text()); 14 | }); 15 | 16 | await page.goto(); 17 | 18 | expect( 19 | logs.filter(s => s === 'JupyterLab extension papyri-lab is activated!') 20 | ).toHaveLength(1); 21 | }); 22 | -------------------------------------------------------------------------------- /papyri-lab/ui-tests/yarn.lock: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jupyter/papyri/7b6ca7430751b9db9fd3def71dc6edfc3d528972/papyri-lab/ui-tests/yarn.lock -------------------------------------------------------------------------------- /papyri-logo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jupyter/papyri/7b6ca7430751b9db9fd3def71dc6edfc3d528972/papyri-logo.png -------------------------------------------------------------------------------- /papyri/__main__.py: -------------------------------------------------------------------------------- 1 | from papyri import app 2 | 3 | app() 4 | -------------------------------------------------------------------------------- /papyri/app/static/css/main.e6c13ad2.css: -------------------------------------------------------------------------------- 1 | body{-webkit-font-smoothing:antialiased;-moz-osx-font-smoothing:grayscale;font-family:-apple-system,BlinkMacSystemFont,Segoe UI,Roboto,Oxygen,Ubuntu,Cantarell,Fira Sans,Droid Sans,Helvetica Neue,sans-serif;margin:0}code{font-family:source-code-pro,Menlo,Monaco,Consolas,Courier New,monospace} 2 | /*# sourceMappingURL=main.e6c13ad2.css.map*/ -------------------------------------------------------------------------------- /papyri/app/static/js/main.27408fde.js.LICENSE.txt: -------------------------------------------------------------------------------- 1 | /*! 2 | Copyright (c) 2018 Jed Watson. 3 | Licensed under the MIT License (MIT), see 4 | http://jedwatson.github.io/classnames 5 | */ 6 | 7 | /*! regenerator-runtime -- Copyright (c) 2014-present, Facebook, Inc. -- license (MIT): https://github.com/facebook/regenerator/blob/main/LICENSE */ 8 | 9 | /** 10 | * @license React 11 | * react-dom.production.min.js 12 | * 13 | * Copyright (c) Facebook, Inc. and its affiliates. 14 | * 15 | * This source code is licensed under the MIT license found in the 16 | * LICENSE file in the root directory of this source tree. 17 | */ 18 | 19 | /** 20 | * @license React 21 | * react-jsx-runtime.production.min.js 22 | * 23 | * Copyright (c) Facebook, Inc. and its affiliates. 24 | * 25 | * This source code is licensed under the MIT license found in the 26 | * LICENSE file in the root directory of this source tree. 27 | */ 28 | 29 | /** 30 | * @license React 31 | * react.production.min.js 32 | * 33 | * Copyright (c) Facebook, Inc. and its affiliates. 34 | * 35 | * This source code is licensed under the MIT license found in the 36 | * LICENSE file in the root directory of this source tree. 37 | */ 38 | 39 | /** 40 | * @license React 41 | * scheduler.production.min.js 42 | * 43 | * Copyright (c) Facebook, Inc. and its affiliates. 44 | * 45 | * This source code is licensed under the MIT license found in the 46 | * LICENSE file in the root directory of this source tree. 47 | */ 48 | 49 | /** 50 | * @license React 51 | * use-sync-external-store-shim.production.min.js 52 | * 53 | * Copyright (c) Facebook, Inc. and its affiliates. 54 | * 55 | * This source code is licensed under the MIT license found in the 56 | * LICENSE file in the root directory of this source tree. 57 | */ 58 | -------------------------------------------------------------------------------- /papyri/app/static/js/react-syntax-highlighter_languages_highlight_abnf.05a76338.chunk.js: -------------------------------------------------------------------------------- 1 | (self.webpackChunkpapyri_frontend=self.webpackChunkpapyri_frontend||[]).push([[3494],{1290:e=>{function a(){for(var e=arguments.length,a=new Array(e),n=0;n{return(a=e)?"string"===typeof a?a:a.source:null;var a})).join("")}e.exports=function(e){const n={ruleDeclaration:/^[a-zA-Z][a-zA-Z0-9-]*/,unexpectedChars:/[!@#$^&',?+~`|:]/},r=e.COMMENT(/;/,/$/),s={className:"attribute",begin:a(n.ruleDeclaration,/(?=\s*=)/)};return{name:"Augmented Backus-Naur Form",illegal:n.unexpectedChars,keywords:["ALPHA","BIT","CHAR","CR","CRLF","CTL","DIGIT","DQUOTE","HEXDIG","HTAB","LF","LWSP","OCTET","SP","VCHAR","WSP"],contains:[s,r,{className:"symbol",begin:/%b[0-1]+(-[0-1]+|(\.[0-1]+)+){0,1}/},{className:"symbol",begin:/%d[0-9]+(-[0-9]+|(\.[0-9]+)+){0,1}/},{className:"symbol",begin:/%x[0-9A-F]+(-[0-9A-F]+|(\.[0-9A-F]+)+){0,1}/},{className:"symbol",begin:/%[si]/},e.QUOTE_STRING_MODE,e.NUMBER_MODE]}}}}]); 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2 | //# sourceMappingURL=react-syntax-highlighter_languages_highlight_zephir.6431d59e.chunk.js.map -------------------------------------------------------------------------------- /papyri/config.py: -------------------------------------------------------------------------------- 1 | from os.path import expanduser 2 | from pathlib import Path 3 | 4 | base_dir = Path(expanduser("~/.papyri/")) 5 | base_dir.mkdir(parents=True, exist_ok=True) 6 | 7 | html_dir = base_dir / "html" 8 | html_dir.mkdir(parents=True, exist_ok=True) 9 | 10 | ingest_dir = base_dir / "ingest" 11 | ingest_dir.mkdir(parents=True, exist_ok=True) 12 | 13 | 14 | logo = r""" 15 | ___ _ 16 | | _ \__ _ _ __ _ _ _ _(_) 17 | | _/ _` | '_ \ || | '_| | 18 | |_| \__,_| .__/\_, |_| |_| 19 | |_| |__/ 20 | """ 21 | -------------------------------------------------------------------------------- /papyri/core.py: -------------------------------------------------------------------------------- 1 | """ 2 | Core Papyri data structures. 3 | 4 | This should likely be the most stable part of Papyri as it is what handles and validate the intermediate 5 | representation(s) 6 | 7 | It should likely be the modules with the less dependencies as well as being synchronous, to be usable from most context 8 | and minimal installs. 9 | """ 10 | 11 | from __future__ import annotations 12 | 13 | import json 14 | from dataclasses import dataclass 15 | 16 | 17 | class EnhancedJSONEncoder(json.JSONEncoder): 18 | def default(self, o): 19 | if hasattr(o, "__to_json__"): 20 | return o.__to_json__(self) 21 | elif dataclass.is_dataclass(o): 22 | return dataclass.asdict(o) 23 | return super().default(o) 24 | 25 | def decode(self, s): 26 | json.loads(s, object_hook=self.hook) 27 | -------------------------------------------------------------------------------- /papyri/errors.py: -------------------------------------------------------------------------------- 1 | class IncorrectInternalDocsLen(AssertionError): 2 | pass 3 | 4 | 5 | class TextSignatureParsingFailed(ValueError): 6 | pass 7 | 8 | 9 | class NumpydocParseError(ValueError): 10 | pass 11 | 12 | 13 | class ExampleError1(ValueError): 14 | pass 15 | 16 | 17 | class StrictParsingError(Exception): 18 | pass 19 | 20 | 21 | class SpaceAfterBlockDirectiveError(Exception): 22 | pass 23 | 24 | 25 | class VisitSubstitutionDefinitionNotImplementedError(NotImplementedError): 26 | pass 27 | 28 | 29 | class VisitCitationReferenceNotImplementedError(NotImplementedError): 30 | pass 31 | 32 | 33 | class VisitCitationNotImplementedError(NotImplementedError): 34 | pass 35 | 36 | 37 | class SerialisationError(Exception): 38 | pass 39 | 40 | 41 | class UnseenError(Exception): 42 | pass 43 | -------------------------------------------------------------------------------- /papyri/jlab.py: -------------------------------------------------------------------------------- 1 | import sys 2 | 3 | from IPython.core.magic import Magics, line_magic, magics_class 4 | from IPython.display import IFrame 5 | import IPython 6 | 7 | 8 | # The class MUST call this class decorator at creation time 9 | @magics_class 10 | class Papyri(Magics): 11 | def newhelp(self, obj): 12 | mod = obj.__module__ 13 | root = mod.split(".")[0] 14 | fq = mod + "." + obj.__name__ 15 | 16 | version = sys.modules[root].__version__ 17 | return IFrame( 18 | f"http://127.0.0.1:1234/p/{root}/{version}/api/{fq}", "100%", "100%" 19 | ) 20 | 21 | @line_magic 22 | def papyri(self, line): 23 | path0, *path = line.strip().split(".") 24 | obj = self.shell.user_ns[path0] 25 | for p in path: 26 | obj = getattr(obj, p) 27 | return self.newhelp(obj) 28 | 29 | 30 | ip = IPython.get_ipython() 31 | if ip: 32 | ip.register_magics(Papyri) 33 | -------------------------------------------------------------------------------- /papyri/py.types: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jupyter/papyri/7b6ca7430751b9db9fd3def71dc6edfc3d528972/papyri/py.types -------------------------------------------------------------------------------- /papyri/static/favicon.ico: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jupyter/papyri/7b6ca7430751b9db9fd3def71dc6edfc3d528972/papyri/static/favicon.ico -------------------------------------------------------------------------------- /papyri/static/jax/input/TeX/config.js: -------------------------------------------------------------------------------- 1 | /* 2 | * /MathJax-v2/jax/input/TeX/config.js 3 | * 4 | * Copyright (c) 2009-2018 The MathJax Consortium 5 | * 6 | * Licensed under the Apache License, Version 2.0 (the "License"); 7 | * you may not use this file except in compliance with the License. 8 | * You may obtain a copy of the License at 9 | * 10 | * http://www.apache.org/licenses/LICENSE-2.0 11 | * 12 | * Unless required by applicable law or agreed to in writing, software 13 | * distributed under the License is distributed on an "AS IS" BASIS, 14 | * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 15 | * See the License for the specific language governing permissions and 16 | * limitations under the License. 17 | */ 18 | 19 | MathJax.InputJax.TeX=MathJax.InputJax({id:"TeX",version:"2.7.7",directory:MathJax.InputJax.directory+"/TeX",extensionDir:MathJax.InputJax.extensionDir+"/TeX",config:{TagSide:"right",TagIndent:"0.8em",MultLineWidth:"85%",equationNumbers:{autoNumber:"none",formatNumber:function(a){return a},formatTag:function(a){return"("+a+")"},formatID:function(a){return"mjx-eqn-"+String(a).replace(/\s/g,"_")},formatURL:function(b,a){return a+"#"+encodeURIComponent(b)},useLabelIds:true}},resetEquationNumbers:function(){}});MathJax.InputJax.TeX.Register("math/tex");MathJax.InputJax.TeX.loadComplete("config.js"); 20 | -------------------------------------------------------------------------------- /papyri/static/papyri-logo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jupyter/papyri/7b6ca7430751b9db9fd3def71dc6edfc3d528972/papyri/static/papyri-logo.png -------------------------------------------------------------------------------- /papyri/static/papyri.tcss: -------------------------------------------------------------------------------- 1 | /* This file is used by textual mode */ 2 | 3 | #body { 4 | width: 100%; 5 | } 6 | -------------------------------------------------------------------------------- /papyri/static/webfonts/fa-solid-900.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jupyter/papyri/7b6ca7430751b9db9fd3def71dc6edfc3d528972/papyri/static/webfonts/fa-solid-900.ttf -------------------------------------------------------------------------------- /papyri/static/webfonts/fa-solid-900.woff: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jupyter/papyri/7b6ca7430751b9db9fd3def71dc6edfc3d528972/papyri/static/webfonts/fa-solid-900.woff -------------------------------------------------------------------------------- /papyri/static/webfonts/fa-solid-900.woff2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jupyter/papyri/7b6ca7430751b9db9fd3def71dc6edfc3d528972/papyri/static/webfonts/fa-solid-900.woff2 -------------------------------------------------------------------------------- /papyri/templates/examples.tpl.j2: -------------------------------------------------------------------------------- 1 | {% extends "skeleton.tpl.j2" %} 2 | 3 | {% set current_type = 'Examples' %} 4 | 5 | {% from 'macros.tpl.j2' import render_II, example, render_myst with context %} 6 | 7 | {%block api %} 8 | 9 | 10 | {% for data in ex.children %} 11 | {%- set type = data.__class__.__name__ -%} 12 | {% if type == 'Fig' %} 13 |
14 | {% elif type[0] == 'M' %} 15 | {{ render_myst(data) }} 16 | {% else %} 17 | {{render_II(data)}} 18 | {% endif %} 19 | 20 | {% endfor %} 21 | 22 | 23 | 24 | {% endblock %} 25 | -------------------------------------------------------------------------------- /papyri/templates/gallery.tpl.j2: -------------------------------------------------------------------------------- 1 | {% extends "skeleton.tpl.j2" %} 2 | {% set current_type = 'Gallery' %} 3 | {%block api%} 4 | {% for m,figs in figmap.items() %} 5 |

{{m}}

6 | {% for impath, link, name in figs %} 7 | {% if loop.changed(link) %} 8 |

{{name}}

9 | {% endif %} 10 | 11 | {%endfor%} 12 | {%endfor%} 13 | {% endblock %} 14 | -------------------------------------------------------------------------------- /papyri/templates/graph.tpl.j2: -------------------------------------------------------------------------------- 1 | {% macro d3script(graph) %} 2 | 3 | 4 | 8 | 11 | 12 | 13 | {% endmacro %} 14 | -------------------------------------------------------------------------------- /papyri/templates/html.tpl.j2: -------------------------------------------------------------------------------- 1 | {%- extends "skeleton.tpl.j2" %} 2 | 3 | {%block api %} 4 |
5 | 6 | 7 | {% from 'macros.tpl.j2' import render_paragraph, example, render_myst_json, render_II with context %} 8 | {% from 'graph.tpl.j2' import d3script with context%} 9 | 10 | 11 | 12 | {{render_myst_json(myst_root)}} 13 | 14 | 15 | {% if graph %} 16 |

Local connectivity graph

17 |

Hover to see nodes names; edges to Self not shown, Caped at 50 nodes.

18 | 19 |

Using a canvas is more power efficient and can get hundred of nodes ; but does not allow hyperlinks; , arrows 20 | or text (beyond on hover)

21 | 22 |

SVG is more flexible but power hungry; and does not scale well to 50 + nodes.

23 | 24 | 25 | 26 |

All aboves nodes referred to, (or are referred from) current nodes; Edges from Self to other have been omitted 27 | (or all nodes would be connected to the central node "self" which is not useful). Nodes are colored by the library 28 | they belong to, and scaled with the number of references pointing them

29 | {% endif %} 30 | 31 |
32 | 33 | {%if meta.get('github_slug')%} 34 | GitHub : {{item_file}}#{{item_line}} 35 | {% else %} 36 | File: {{item_file}}#{{item_line}} 37 | {%endif%}
38 | 39 | {% if graph is defined %} 40 | {{d3script(graph)}} 41 | {% endif %} 42 |
43 | {% endblock %} 44 | 45 | 46 | -------------------------------------------------------------------------------- /papyri/templates/index.tpl.j2: -------------------------------------------------------------------------------- 1 | 2 | {% include 'head.tpl.j2' %} 3 | 4 |
5 | 6 | 7 |

The Papyri project attempt to provide most of the scientific Python docs in a single place will cross-projects 8 | bidirectional crosslinking

9 | 10 |

Get started with one of the following projects

11 |
12 | 13 |
14 |
15 | {% for module, versions, logo in data %} 16 |
17 | 18 |
19 | {% if logo %} 20 | 21 | 22 | Project logo 23 | {% endif %} 24 |
25 | 26 |
27 |

{{module}}

28 |

29 | {% for version in versions %} 30 | {{version}} 31 | {% if not loop.last %} – {% endif %} 32 | {% endfor%} 33 |

34 |
35 |
36 | {% endfor%} 37 |
38 | 39 | -------------------------------------------------------------------------------- /papyri/templates/root.tpl.j2: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | Document 6 | 7 | 8 | 9 | 10 | 13 | 16 | 17 | 18 | 19 | 20 | 21 |

PaPyRi

22 |
23 | {% macro branch(entries) -%} 24 | {%- for k,v in entries.items() %} 25 | {% if len(v) == 1 and '__link__' in v %} 26 | {{v['__link__']}}
27 | {% else %} 28 | {% if k == '__link__' %} 29 | {{v}}
30 | 31 | {% else %} 32 |
33 | {{k}} 34 | {{branch(v)}} 35 |
36 | {%endif %} 37 | {%endif %} 38 | 39 | {%endfor %} 40 | {%- endmacro %} 41 | 42 | {{ branch(tree)}} 43 |
44 | 45 | 46 | 47 | 48 | -------------------------------------------------------------------------------- /papyri/templates/toctree.tpl.j2: -------------------------------------------------------------------------------- 1 | {% extends "skeleton.tpl.j2" %} 2 | {% set current_type = 'TocTree' %} 3 | {% from 'macros.tpl.j2' import render_paragraph, lines, block, myst_directive, example, render_II with context %} 4 | 5 | {% macro tci(obj) -%} 6 | {%if obj.children%} 7 |
8 | {{obj.title}} 9 |
    10 | {% for c in obj.children %} 11 |
  • {{tci(c)}}
    • 12 | {% endfor %} 13 |
14 |
15 | {% else %} 16 | {{obj.title}} 17 | {%endif%} 18 | {% endmacro %} 19 | 20 | {%block api%} 21 |
    22 | {% for toctree in toctrees%} 23 |
  • {{tci(toctree)}}
    • 24 | {% endfor %} 25 |
26 | {% endblock %} 27 | -------------------------------------------------------------------------------- /papyri/templates/virtual.j2: -------------------------------------------------------------------------------- 1 | 2 | {%- extends "skeleton.tpl.j2" %} 3 | -------------------------------------------------------------------------------- /papyri/tests/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jupyter/papyri/7b6ca7430751b9db9fd3def71dc6edfc3d528972/papyri/tests/__init__.py -------------------------------------------------------------------------------- /papyri/tests/corpus/no-space-parenthesis.expected.txt: -------------------------------------------------------------------------------- 1 | [{"type": "Section", "children": [{"type": "paragraph", "children": [{"type": "text", "value": "there should not be spaces ("}, {"type": "inlineCode", "value": "between"}, {"type": "text", "value": ") the parenthesis."}]}], "title": null, "level": 0, "target": null}] -------------------------------------------------------------------------------- /papyri/tests/corpus/no-space-parenthesis.sample.txt: -------------------------------------------------------------------------------- 1 | there should not be spaces (``between``) the parenthesis. 2 | -------------------------------------------------------------------------------- /papyri/tests/corpus/test.expected.txt: -------------------------------------------------------------------------------- 1 | [{"type": "Section", "children": [{"type": "paragraph", "children": [{"type": "text", "value": "This is just text."}]}], "title": null, "level": 0, "target": null}] -------------------------------------------------------------------------------- /papyri/tests/corpus/test.sample.txt: -------------------------------------------------------------------------------- 1 | This is just text. 2 | -------------------------------------------------------------------------------- /papyri/tests/expected/papyri.examples:annotation_with_hex_addresses.expected: -------------------------------------------------------------------------------- 1 | annotation_with_hex_addresses(x: '' = ' at 0x0000>') 3 | ## Summary 4 | 5 | This function is a function for which the signature will have and hexadecimal 6 | addresse. 7 | 8 | ## Extended Summary 9 | 10 | It is included to show that the hex address should be normalized. 11 | -------------------------------------------------------------------------------- /papyri/tests/expected/papyri.examples:example1.expected: -------------------------------------------------------------------------------- 1 | example1(pos: 'int', only: 'None', /, var: 'Union', args='1', *, kwarg, 2 | also='None', **kwargs) 3 | ## Summary 4 | 5 | first example. 6 | -------------------------------------------------------------------------------- /papyri/tests/test_ascii_expected.py: -------------------------------------------------------------------------------- 1 | """ 2 | Various ascii rendering test, where we compare the rendered version to an expected file 3 | """ 4 | 5 | import pytest 6 | from pathlib import Path 7 | from papyri.render import GraphStore, ingest_dir, _rich_ascii 8 | 9 | HERE = Path(__file__).parent 10 | 11 | expected = (HERE / "expected").glob("*") 12 | 13 | 14 | def _get_result_for_name(name): 15 | # WARNING: This test only works if the papyri and numpy docs are generated and 16 | # ingested first 17 | gstore = GraphStore(ingest_dir, {}) 18 | key = next(iter(gstore.glob((None, None, "module", name)))) 19 | 20 | return _rich_ascii(key, gstore) 21 | 22 | 23 | @pytest.mark.postingest 24 | @pytest.mark.parametrize("file", expected) 25 | def test_g(file): 26 | item = file.name[: -len(".expected")] 27 | res = _get_result_for_name(item) 28 | 29 | expected = file.read_text() 30 | assert expected == res 31 | 32 | 33 | if __name__ == "__main__": 34 | gstore = GraphStore(ingest_dir, {}) 35 | for file in expected: 36 | assert file.name.endswith(".expected") 37 | item = file.name[: -len(".expected")] 38 | key = next(iter(gstore.glob((None, None, "module", item)))) 39 | res = _get_result_for_name(item) 40 | print("regen", key) 41 | file.write_text(res) 42 | -------------------------------------------------------------------------------- /papyri/tests/test_corpus.py: -------------------------------------------------------------------------------- 1 | import pytest 2 | 3 | from .utils import _expected_path, SAMPLES, _serialize, _process 4 | 5 | PAIRS = [(s, _expected_path(s)) for s in SAMPLES] 6 | 7 | 8 | @pytest.mark.parametrize("sample, expected", PAIRS) 9 | def test_corpus(sample, expected): 10 | processed = _process(sample) 11 | exported = _serialize(processed) 12 | 13 | assert expected.read_bytes() == exported 14 | -------------------------------------------------------------------------------- /papyri/tests/test_error_collector.py: -------------------------------------------------------------------------------- 1 | from papyri.gen import ErrorCollector 2 | import logging 3 | import pytest 4 | from papyri.errors import UnseenError 5 | 6 | log = logging.getLogger(__name__) 7 | 8 | 9 | class Config: 10 | pass 11 | 12 | 13 | def JustPasses(): 14 | pass 15 | 16 | 17 | def DoesValueError(): 18 | raise ValueError("A") 19 | 20 | 21 | def ShouldValueErrorTypeError(): 22 | raise TypeError("B") 23 | 24 | 25 | def test_capture_correct(): 26 | c = Config() 27 | c.expected_errors = {"ValueError": ["TestIterm"]} 28 | c.early_error = False 29 | c.fail_unseen_error = True 30 | ec = ErrorCollector(c, log) 31 | 32 | with ec("TestItem"): 33 | DoesValueError() 34 | 35 | assert ec._unexpected_errors == {"ValueError": ["TestItem"]} 36 | 37 | 38 | def test_pass_no_collect(): 39 | c = Config() 40 | c.expected_errors = {} 41 | c.early_error = True 42 | c.fail_unseen_error = True 43 | ec = ErrorCollector(c, log) 44 | 45 | with ec("TestItem"): 46 | JustPasses() 47 | 48 | 49 | def test_2(): 50 | c = Config() 51 | c.expected_errors = {"ValueError": ["TestItem"]} 52 | c.early_error = True 53 | c.fail_unseen_error = True 54 | ec = ErrorCollector(c, log) 55 | with pytest.raises(UnseenError): 56 | with ec("TestItem"): 57 | JustPasses() 58 | 59 | 60 | def test_4(): 61 | c = Config() 62 | c.expected_errors = {"ValueError": ["TestItem"]} 63 | c.early_error = False 64 | c.fail_unseen_error = True 65 | ec = ErrorCollector(c, log) 66 | 67 | with ec("TestItem"): 68 | ShouldValueErrorTypeError() 69 | -------------------------------------------------------------------------------- /papyri/tests/test_full_render.py: -------------------------------------------------------------------------------- 1 | import logging 2 | 3 | # from papyri.config import html_dir 4 | # import pytest 5 | 6 | log = logging.getLogger("papyri") 7 | 8 | # PRESENT_PATTERNS = [ 9 | # # removed in upstream numpy 10 | # # ( 11 | # # "p/numpy/1.24.1/api/numpy.html", 12 | # # "Make sure there is no space between verbabim and surrounding words", 13 | # # "profile (ipython -p numpy),", 14 | # # ), 15 | # ] 16 | # 17 | # 18 | # @pytest.mark.parametrize("path, reason, expected", PRESENT_PATTERNS) 19 | # def test_render(path, reason, expected): 20 | # html_path = html_dir / path 21 | # if not html_path.exists(): 22 | # logging.info("papyri render not done, rendering now.") 23 | # from papyri.render import main as m2 24 | # import trio 25 | # 26 | # trio.run(m2, False, True, False, True, True, False) 27 | # text = html_path.read_text() 28 | # assert expected in text, reason 29 | -------------------------------------------------------------------------------- /papyri/tests/test_take2.py: -------------------------------------------------------------------------------- 1 | import pytest 2 | 3 | from papyri.ts import parse 4 | 5 | from ..myst_ast import UnprocessedDirective 6 | from ..take2 import ( 7 | dedent_but_first, 8 | get_object, 9 | ) 10 | 11 | 12 | @pytest.mark.parametrize( 13 | "target, type_, number", 14 | [ 15 | ("numpy", UnprocessedDirective, 0), 16 | ("numpy.linspace", UnprocessedDirective, 2), 17 | ], 18 | ) 19 | def test_parse_blocks(target, type_, number): 20 | sections = parse(dedent_but_first(get_object(target).__doc__).encode(), "test") 21 | filtered = [b for section in sections for b in section.children if type(b) == type_] 22 | assert len(filtered) == number 23 | -------------------------------------------------------------------------------- /papyri/tests/utils.py: -------------------------------------------------------------------------------- 1 | from pathlib import Path 2 | import json 3 | from papyri.tree import DVR 4 | from papyri.ts import parse 5 | import sys 6 | 7 | HERE = Path(__file__).parent 8 | CORP = HERE / "corpus" 9 | SAMPLES = CORP.glob("*.sample.txt") 10 | 11 | 12 | def _expected_path(sample_path: Path) -> Path: 13 | return CORP / sample_path.name.replace(".sample.", ".expected.") 14 | 15 | 16 | def _serialize(data) -> bytes: 17 | processed = [s.to_dict() for s in data] 18 | return json.dumps(processed).encode() 19 | 20 | 21 | def _process(sample: Path): 22 | bytes_ = sample.read_bytes() 23 | data = parse(bytes_, sample) 24 | dv = DVR( 25 | str(sample), 26 | frozenset(), 27 | local_refs=set(), 28 | aliases={}, 29 | version="TestSuite", 30 | config={}, 31 | ) 32 | return [dv.visit(s) for s in data] 33 | 34 | 35 | if __name__ == "__main__": 36 | targets = [Path(p) for p in sys.argv[1:]] 37 | for p in targets: 38 | if CORP not in p.resolve().parents: 39 | print(p, "not in corpus", CORP, p.parents) 40 | else: 41 | print("process...", p) 42 | data = _process(p) 43 | bytes_ = _serialize(data) 44 | Path(_expected_path(p)).write_bytes(bytes_) 45 | -------------------------------------------------------------------------------- /papyri/toc.py: -------------------------------------------------------------------------------- 1 | from typing import Dict 2 | 3 | 4 | def flatten(dct): 5 | return {k: [s for sub in toc for s in sub] for k, toc in dct.items()} 6 | 7 | 8 | def dotdotcount(path): 9 | n = 0 10 | acc = [] 11 | leading = True 12 | for it in path: 13 | if it == "..": 14 | assert leading is True, path 15 | n += 1 16 | else: 17 | leading = False 18 | acc.append(it) 19 | return n, acc 20 | 21 | 22 | def _tree(current_path, unnest, counter, depth=0) -> Dict: 23 | if current_path not in counter: 24 | print("Warning, ", current_path, "not in Counter") 25 | counter[current_path] = 0 26 | counter[current_path] += 1 27 | children = {} 28 | children_path = unnest.get(current_path, []) 29 | directory = current_path.split(":")[:-1] 30 | # print(' '*depth*4, 'dir', directory, f'({current_path})') 31 | for cp in children_path: 32 | if not cp: 33 | continue 34 | 35 | # assert not cp.startswith("/"), breakpoint() 36 | if cp.startswith("/"): 37 | print("skip absolute path", cp, "in", current_path) 38 | continue 39 | if cp.endswith("/"): 40 | cp = cp + "index" 41 | 42 | if cp.startswith("https://"): 43 | continue 44 | 45 | n, sub = dotdotcount(cp.split("/")) 46 | directory = current_path.split(":")[: -1 - n] 47 | p = ":".join(directory + sub) 48 | 49 | if p.endswith(".rst"): 50 | p = p[:-4] 51 | assert p != current_path 52 | # print(' '*depth*4,cp, '->', p) 53 | assert p not in children 54 | if p not in counter: 55 | print("skip Path", p, "in", current_path, repr(cp)) 56 | continue 57 | children[p] = _tree(p, unnest, depth=depth + 1, counter=counter) 58 | 59 | return children 60 | 61 | 62 | def make_tree(data): 63 | data = {k: v for k, v in data.items()} 64 | data = flatten(data) 65 | data = {k: [i[1] for i in v] for k, v in data.items()} 66 | c = {k: 0 for k in data.keys()} 67 | my_tree = _tree("index", data, c) 68 | return my_tree 69 | -------------------------------------------------------------------------------- /pyproject.toml: -------------------------------------------------------------------------------- 1 | [build-system] 2 | requires = ["flit_core >=3.2,<4"] 3 | build-backend = "flit_core.buildapi" 4 | 5 | [project] 6 | name = "papyri" 7 | authors = [{name = "Matthias Bussonnier", email = "bussonniermatthias@gmail.com"}] 8 | classifiers = ["License :: OSI Approved :: MIT License"] 9 | readme = "Readme.md" 10 | license = {file = "LICENSE"} 11 | dynamic = ["version","description"] 12 | requires-python=">=3.11" 13 | dependencies = [ 14 | "black", 15 | "flatlatex", 16 | "httpx", 17 | "ipython", 18 | "jedi", 19 | "jinja2>=3.1.2", 20 | "numpydoc", 21 | "pygments", 22 | "quart-trio>=0.6.0", 23 | "quart>=0.18.4", 24 | "rich", 25 | "tomli_w", 26 | "typer>=0.9", 27 | "urwid", 28 | "velin", 29 | # "tree_sitter", # tree sitter does not currently provide builds for all platform. tree-sitter-builds is an 30 | # alternative build that provide more wheels. 31 | "tree-sitter-builds", 32 | "tree_sitter_languages>=1.5", 33 | # 34 | "matplotlib", 35 | "cbor2", 36 | "minify_html", 37 | "textual", 38 | "emoji", 39 | ] 40 | 41 | [project.scripts] 42 | papyri = "papyri:app" 43 | 44 | [tool.pytest.ini_options] 45 | addopts = "--durations=10 --ignore=papyri-lab" 46 | filterwarnings = "ignore:The module numpy.dual.*:DeprecationWarning" 47 | 48 | [project.urls] 49 | Home = "https://github.com/Jupyter/papyri" 50 | 51 | [tool.mypy] 52 | python_version = '3.11' 53 | ignore_missing_imports = true 54 | -------------------------------------------------------------------------------- /requirements-dev.txt: -------------------------------------------------------------------------------- 1 | pytest 2 | pytest-cov 3 | flit 4 | matplotlib 5 | pytest-trio 6 | coverage 7 | jinja2==3.1.4 8 | pipdeptree 9 | black 10 | mypy 11 | flake8<8 12 | scipy 13 | -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- 1 | emoji 2 | flit 3 | jedi 4 | matplotlib 5 | numpydoc 6 | pygments 7 | quart-trio 8 | requests 9 | rich 10 | textual 11 | there 12 | tree_sitter 13 | typer 14 | -------------------------------------------------------------------------------- /tools/vendor_scripts.sh: -------------------------------------------------------------------------------- 1 | mkdir papyri/static/fa/ 2 | curl -L -o papyri/static/fa/fontawesome.css https://use.fontawesome.com/releases/v5.8.1/css/all.css 3 | 4 | mkdir papyri/static/webfonts/ 5 | curl -L -o papyri/static/webfonts/fa-solid-900.woff2 https://use.fontawesome.com/releases/v5.8.1/webfonts/fa-solid-900.woff2 6 | curl -L -o papyri/static/webfonts/fa-solid-900.woff https://use.fontawesome.com/releases/v5.8.1/webfonts/fa-solid-900.woff 7 | curl -L -o papyri/static/webfonts/fa-solid-900.ttf https://use.fontawesome.com/releases/v5.8.1/webfonts/fa-solid-900.ttf 8 | 9 | 10 | curl -L -o papyri/static/new.css https://cdn.jsdelivr.net/npm/@exampledev/new.css@1.1.2/new.min.css 11 | 12 | 13 | mkdir -p papyri/static/jax/input/TeX 14 | 15 | mkdir papyri/static/extensions 16 | curl -L -o papyri/static/MathJax.js https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/MathJax.js 17 | 18 | mkdir -p papyri/static/jax 19 | mkdir -p papyri/static/jax/extensions 20 | mkdir -p papyri/static/jax/input 21 | mkdir -p papyri/static/jax/input/TeX 22 | mkdir -p papyri/static/jax/output 23 | mkdir -p papyri/static/jax/output/HTML-CSS/ 24 | curl -L -o 'papyri/static/extensions/MathMenu.js' https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/extensions/MathMenu.js 25 | curl -L -o 'papyri/static/extensions/MathZoom.js' https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/extensions/MathZoom.js 26 | curl -L -o 'papyri/static/jax/input/TeX/config.js' https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/jax/input/TeX/config.js 27 | curl -L -o 'papyri/static/jax/output/HTML-CSS/config.js' https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/jax/output/HTML-CSS/config.js 28 | curl -L -o 'papyri/static/extensions/tex2jax.js' https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/extensions/tex2jax.js 29 | 30 | curl -o papyri/static/myst.js https://unpkg.com/mystjs@0.0.15/dist/myst.min.js 31 | --------------------------------------------------------------------------------