├── README.md ├── documents ├── overview.png └── tutorials │ ├── fmllm-miccai-25 │ └── slides.pdf │ └── fommia-miccai-24 │ └── slides.pdf ├── fseft ├── configs.py ├── datasets │ ├── configs.py │ ├── dataset.py │ └── utils.py ├── modeling │ ├── blackbox │ │ ├── Adapter.py │ │ ├── LP.py │ │ └── __init__.py │ ├── heads.py │ └── peft │ │ ├── AdaptFormer.py │ │ ├── AdapterCNN.py │ │ ├── Affine.py │ │ ├── Bias.py │ │ ├── Compacter.py │ │ ├── FT.py │ │ ├── LoRA.py │ │ └── __init__.py └── utils.py ├── local_data ├── constants.py ├── datasets │ └── README.md ├── experiments │ ├── experiments_novel_ft_selfsup_5shot │ ├── experiments_novel_ft_suptrain_5shot │ └── experiments_novel_lora_5shot └── partitions │ ├── pretrain │ └── train.txt │ └── transferability │ ├── flare │ ├── _test.txt │ └── _train.txt │ └── totalseg_selected │ ├── aorta_test.txt │ ├── aorta_train.txt │ ├── duodenum_test.txt │ ├── duodenum_train.txt │ ├── esophagus_test.txt │ ├── esophagus_train.txt │ ├── gallbladder_test.txt │ ├── gallbladder_train.txt │ ├── gluteus_maximus_left_test.txt │ ├── gluteus_maximus_left_train.txt │ ├── gluteus_maximus_right_test.txt │ ├── gluteus_maximus_right_train.txt │ ├── gluteus_medius_left_test.txt │ ├── gluteus_medius_left_train.txt │ ├── gluteus_medius_right_test.txt │ ├── gluteus_medius_right_train.txt │ ├── gluteus_minimus_left_test.txt │ ├── gluteus_minimus_left_train.txt │ ├── gluteus_minimus_right_test.txt │ ├── gluteus_minimus_right_train.txt │ ├── heart_atrium_left_test.txt │ ├── heart_atrium_left_train.txt │ ├── heart_atrium_right_test.txt │ ├── heart_atrium_right_train.txt │ ├── heart_myocardium_test.txt │ ├── heart_myocardium_train.txt │ ├── heart_ventricle_left_test.txt │ ├── heart_ventricle_left_train.txt │ ├── heart_ventricle_right_test.txt │ ├── heart_ventricle_right_train.txt │ ├── kidney_left_test.txt │ ├── kidney_left_train.txt │ ├── liver_test.txt │ ├── liver_train.txt │ ├── lung_lower_lobe_left_test.txt │ ├── lung_lower_lobe_left_train.txt │ ├── lung_lower_lobe_right_test.txt │ ├── lung_lower_lobe_right_train.txt │ ├── lung_middle_lobe_right_test.txt │ ├── lung_middle_lobe_right_train.txt │ ├── lung_upper_lobe_left_test.txt │ ├── lung_upper_lobe_left_train.txt │ ├── lung_upper_lobe_right_test.txt │ ├── lung_upper_lobe_right_train.txt │ ├── pancreas_test.txt │ ├── pancreas_train.txt │ ├── spleen_test.txt │ ├── spleen_train.txt │ ├── stomach_test.txt │ └── stomach_train.txt ├── main_fseft.py ├── main_pretrain.py ├── models ├── architectures │ ├── SwinUNETR.py │ └── unet3d.py ├── configs.py └── pretrained_weights │ └── README.md ├── pretrain └── datasets │ ├── dataset_pretrain.py │ ├── templates.py │ └── utils.py ├── requirements.txt └── utils ├── losses.py ├── metrics.py ├── misc.py ├── models.py ├── prepare_datasets.py ├── scheduler.py └── visualization.py /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jusiro/fewshot-finetuning/HEAD/README.md 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