├── README.md ├── code ├── DatasetLoader.py ├── EvaluateAcc.py ├── EvaluateClustering.py ├── MethodBertComp.py ├── MethodGraphBert.py ├── MethodGraphBertGraphClassification.py ├── MethodPadding.py ├── MethodProcessRaw.py ├── MethodSegmentedGraphBertGraphClassification.py ├── MethodWLNodeColoring.py ├── ResultSaving.py ├── Settings.py ├── __init__.py ├── __pycache__ │ ├── DatasetLoader.cpython-37.pyc │ ├── EvaluateAcc.cpython-37.pyc │ ├── MethodBertComp.cpython-37.pyc │ ├── MethodGraphBert.cpython-37.pyc │ ├── MethodGraphBertGraphClassification.cpython-37.pyc │ ├── MethodPadding.cpython-37.pyc │ ├── MethodProcessRaw.cpython-37.pyc │ ├── MethodSegmentedGraphBertGraphClassification.cpython-37.pyc │ ├── MethodWLNodeColoring.cpython-37.pyc │ ├── ResultSaving.cpython-37.pyc │ ├── Settings.cpython-37.pyc │ └── __init__.cpython-37.pyc └── base_class │ ├── __init__.py │ ├── dataset.py │ ├── evaluate.py │ ├── method.py │ ├── result.py │ └── setting.py ├── data └── MUTAG │ ├── 10fold_idx │ ├── test_idx-1.txt │ ├── test_idx-10.txt │ ├── test_idx-2.txt │ ├── test_idx-3.txt │ ├── test_idx-4.txt │ ├── test_idx-5.txt │ ├── test_idx-6.txt │ ├── test_idx-7.txt │ ├── test_idx-8.txt │ ├── test_idx-9.txt │ ├── train_idx-1.txt │ ├── train_idx-10.txt │ ├── train_idx-2.txt │ ├── train_idx-3.txt │ ├── train_idx-4.txt │ ├── train_idx-5.txt │ ├── train_idx-6.txt │ ├── train_idx-7.txt │ ├── train_idx-8.txt │ └── train_idx-9.txt │ ├── ReadMe │ └── data.txt ├── result ├── AuGBert │ ├── full_input │ │ ├── IMDBBINARY │ │ │ ├── IMDBBINARY_10_500_none_full_input │ │ │ ├── IMDBBINARY_1_500_none_full_input │ │ │ ├── IMDBBINARY_2_500_none_full_input │ │ │ ├── IMDBBINARY_3_500_none_full_input │ │ │ ├── IMDBBINARY_4_500_none_full_input │ │ │ ├── IMDBBINARY_5_500_none_full_input │ │ │ ├── IMDBBINARY_6_500_none_full_input │ │ │ ├── IMDBBINARY_7_500_none_full_input │ │ │ ├── IMDBBINARY_8_500_none_full_input │ │ │ └── IMDBBINARY_9_500_none_full_input │ │ ├── IMDBMULTI │ │ │ ├── IMDBMULTI_10_500_none_full_input │ │ │ ├── IMDBMULTI_1_500_none_full_input │ │ │ ├── IMDBMULTI_2_500_none_full_input │ │ │ ├── IMDBMULTI_3_500_none_full_input │ │ │ ├── IMDBMULTI_4_500_none_full_input │ │ │ ├── IMDBMULTI_5_500_none_full_input │ │ │ ├── IMDBMULTI_6_500_none_full_input │ │ │ ├── IMDBMULTI_7_500_none_full_input │ │ │ ├── IMDBMULTI_8_500_none_full_input │ │ │ └── IMDBMULTI_9_500_none_full_input │ │ ├── MUTAG │ │ │ ├── MUTAG_10_500_none_full_input │ │ │ ├── MUTAG_1_500_none_full_input │ │ │ ├── MUTAG_2_500_none_full_input │ │ │ ├── MUTAG_3_500_none_full_input │ │ │ ├── MUTAG_4_500_none_full_input │ │ │ ├── MUTAG_5_500_none_full_input │ │ │ ├── MUTAG_6_500_none_full_input │ │ │ ├── MUTAG_7_500_none_full_input │ │ │ ├── MUTAG_8_500_none_full_input │ │ │ └── MUTAG_9_500_none_full_input │ │ └── PTC │ │ │ ├── PTC_10_500_none_full_input │ │ │ ├── PTC_1_500_none_full_input │ │ │ ├── PTC_2_500_none_full_input │ │ │ ├── PTC_3_500_none_full_input │ │ │ ├── PTC_4_500_none_full_input │ │ │ ├── PTC_5_500_none_full_input │ │ │ ├── PTC_6_500_none_full_input │ │ │ ├── PTC_7_500_none_full_input │ │ │ ├── PTC_8_500_none_full_input │ │ │ └── PTC_9_500_none_full_input │ ├── isolated_segment │ │ └── MUTAG │ │ │ ├── MUTAG_10_500_none_isolated_segment │ │ │ ├── MUTAG_1_500_none_isolated_segment │ │ │ ├── MUTAG_2_500_none_isolated_segment │ │ │ ├── MUTAG_3_500_none_isolated_segment │ │ │ ├── MUTAG_4_500_none_isolated_segment │ │ │ ├── MUTAG_5_500_none_isolated_segment │ │ │ ├── MUTAG_6_500_none_isolated_segment │ │ │ ├── MUTAG_7_500_none_isolated_segment │ │ │ ├── MUTAG_8_500_none_isolated_segment │ │ │ └── MUTAG_9_500_none_isolated_segment │ └── padding_pruning │ │ └── MUTAG │ │ ├── MUTAG_10_1000_none │ │ ├── MUTAG_10_1000_raw │ │ ├── MUTAG_1_1000_none │ │ ├── MUTAG_1_1000_raw │ │ ├── MUTAG_2_1000_none │ │ ├── MUTAG_2_1000_raw │ │ ├── MUTAG_3_1000_none │ │ ├── MUTAG_3_1000_raw │ │ ├── MUTAG_4_1000_none │ │ ├── MUTAG_4_1000_raw │ │ ├── MUTAG_5_1000_none │ │ ├── MUTAG_5_1000_raw │ │ ├── MUTAG_6_1000_none │ │ ├── MUTAG_6_1000_raw │ │ ├── MUTAG_7_1000_none │ │ ├── MUTAG_7_1000_raw │ │ ├── MUTAG_8_1000_none │ │ ├── MUTAG_8_1000_raw │ │ ├── MUTAG_9_1000_none │ │ └── MUTAG_9_1000_raw ├── Padding │ ├── full_input │ │ └── MUTAG │ ├── isolated_segment │ │ └── MUTAG │ └── padding_pruning │ │ └── MUTAG ├── Preprocess │ └── MUTAG ├── WL │ └── MUTAG └── framework.png ├── script_evaluation_plots.py ├── script_graph_classification.py ├── script_preprocess.py └── script_segmented_graph_classification.py /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jwzhanggy/SEG-BERT/HEAD/README.md -------------------------------------------------------------------------------- /code/DatasetLoader.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jwzhanggy/SEG-BERT/HEAD/code/DatasetLoader.py 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