├── MATI.mlappinstall ├── Examples └── README.txt ├── LICENSE.md └── README.md /MATI.mlappinstall: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jzxu0622/mati/HEAD/MATI.mlappinstall -------------------------------------------------------------------------------- /Examples/README.txt: -------------------------------------------------------------------------------- 1 | Due to the very large file size of the patient data, Examples cannot be uploaded here but can be downloaded from release 1.0. 2 | 3 | The download link is: https://github.com/jzxu0622/mati/releases/download/v1.0/Examples.zip 4 | -------------------------------------------------------------------------------- /LICENSE.md: -------------------------------------------------------------------------------- 1 | Copyright (c) 2024, Junzhong Xu & Vanderbilt University Medical Center 2 | 3 | Redistribution and use in source and binary forms, with or without 4 | modification, are permitted provided that the following conditions are met: 5 | 6 | 1. Redistributions of source code must retain the above copyright notice, this 7 | list of conditions and the following disclaimer. 8 | 9 | 2. Redistributions in binary form must reproduce the above copyright notice, 10 | this list of conditions and the following disclaimer in the documentation 11 | and/or other materials provided with the distribution. 12 | 13 | THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 14 | AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 15 | IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE 16 | DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE 17 | FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL 18 | DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR 19 | SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER 20 | CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, 21 | OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE 22 | OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- 1 | # MATI (Microstructural Analysis of Tissues by Imaging) 2 | --------------------------------------------------------------------------------------------------------------- 3 | MATI (Microstructural Analysis of Tissues by Imaging) v1.0 is a GPU-accelerated toolbox for microstructural diffusion MRI simulation and data fitting with a user-friendly graphical user interface. MATI runs a Finite Difference simulation to simulate diffusion MRI signals arising from arbitrary modeled microstructural tissues and diffusion pulse sequences. As a general framework for data fitting, MATI fits any user-customized signal model to experimental data to extract parameters with a selection of fitting methods. 4 | 5 | MATI was developed by Dr. Junzhong Xu at Vanderbilt University Medical Center. Please send your comments or questions to Junzhong (JZ) Xu (junzhong.xu@vanderbilt.edu) 6 | --------------------------------------------------------------------------------------------------------------- 7 | 8 | # Files 9 | MATI is distributed as a MATLAB App. It contains the following files: 10 | 1. MATI.mlappinstall is the installation file. 11 | 2. MATI_Guide.pdf is a quick guide about how to use MATI for simulation and data fitting with GUI screenshots. 12 | 3. Examples.zip can be extracted to an Example folder that contains example code and data showing how to use MATI scripts. It can be downloaded from the release v1.0. 13 | 4. LICENSE.md is the license file. 14 | 15 | # References 16 | If you use MATI, either in a whole or partially, please cite 17 | 1. this source code: https://github.com/jzxu0622/mati 18 | 2. The MATI paper: https://arxiv.org/abs/2411.04401 19 | 20 | 21 | 22 | --------------------------------------------------------------------------------