├── LICENSE ├── README.md ├── config.py ├── icd9_reader.py ├── models ├── decom_los_model.py ├── ihm_model.py ├── text_utils.py └── utils.py ├── path_setter.sh └── scripts ├── extract_T0.py ├── extract_notes.py ├── fetch_text_events_ts.py ├── generate_patienttohadm_mapping.py ├── preprocess_embeddings.py ├── process_data.py └── utility.py /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kaggarwal/ClinicalNotesICU/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kaggarwal/ClinicalNotesICU/HEAD/README.md -------------------------------------------------------------------------------- /config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kaggarwal/ClinicalNotesICU/HEAD/config.py -------------------------------------------------------------------------------- /icd9_reader.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kaggarwal/ClinicalNotesICU/HEAD/icd9_reader.py -------------------------------------------------------------------------------- /models/decom_los_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kaggarwal/ClinicalNotesICU/HEAD/models/decom_los_model.py -------------------------------------------------------------------------------- /models/ihm_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kaggarwal/ClinicalNotesICU/HEAD/models/ihm_model.py -------------------------------------------------------------------------------- /models/text_utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kaggarwal/ClinicalNotesICU/HEAD/models/text_utils.py -------------------------------------------------------------------------------- /models/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kaggarwal/ClinicalNotesICU/HEAD/models/utils.py -------------------------------------------------------------------------------- /path_setter.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kaggarwal/ClinicalNotesICU/HEAD/path_setter.sh -------------------------------------------------------------------------------- /scripts/extract_T0.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kaggarwal/ClinicalNotesICU/HEAD/scripts/extract_T0.py -------------------------------------------------------------------------------- /scripts/extract_notes.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kaggarwal/ClinicalNotesICU/HEAD/scripts/extract_notes.py -------------------------------------------------------------------------------- /scripts/fetch_text_events_ts.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kaggarwal/ClinicalNotesICU/HEAD/scripts/fetch_text_events_ts.py -------------------------------------------------------------------------------- /scripts/generate_patienttohadm_mapping.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kaggarwal/ClinicalNotesICU/HEAD/scripts/generate_patienttohadm_mapping.py -------------------------------------------------------------------------------- /scripts/preprocess_embeddings.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kaggarwal/ClinicalNotesICU/HEAD/scripts/preprocess_embeddings.py -------------------------------------------------------------------------------- /scripts/process_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kaggarwal/ClinicalNotesICU/HEAD/scripts/process_data.py -------------------------------------------------------------------------------- /scripts/utility.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kaggarwal/ClinicalNotesICU/HEAD/scripts/utility.py --------------------------------------------------------------------------------