├── README.md ├── download_db.sh ├── dummy_test └── query │ ├── features.pkl │ ├── msas │ ├── bfd_uniclust_hits.a3m │ ├── mgnify_hits.sto │ └── uniref90_hits.sto │ ├── ranked_0.pdb │ ├── ranking_debug.json │ ├── relaxed_model_1.pdb │ ├── result_model_1.pkl │ ├── timings.json │ └── unrelaxed_model_1.pdb ├── example └── query.fasta └── run_alphafold.sh /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kalininalab/alphafold_non_docker/HEAD/README.md -------------------------------------------------------------------------------- /download_db.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kalininalab/alphafold_non_docker/HEAD/download_db.sh -------------------------------------------------------------------------------- /dummy_test/query/features.pkl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kalininalab/alphafold_non_docker/HEAD/dummy_test/query/features.pkl -------------------------------------------------------------------------------- /dummy_test/query/msas/bfd_uniclust_hits.a3m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kalininalab/alphafold_non_docker/HEAD/dummy_test/query/msas/bfd_uniclust_hits.a3m -------------------------------------------------------------------------------- /dummy_test/query/msas/mgnify_hits.sto: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kalininalab/alphafold_non_docker/HEAD/dummy_test/query/msas/mgnify_hits.sto -------------------------------------------------------------------------------- /dummy_test/query/msas/uniref90_hits.sto: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kalininalab/alphafold_non_docker/HEAD/dummy_test/query/msas/uniref90_hits.sto -------------------------------------------------------------------------------- /dummy_test/query/ranked_0.pdb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kalininalab/alphafold_non_docker/HEAD/dummy_test/query/ranked_0.pdb -------------------------------------------------------------------------------- /dummy_test/query/ranking_debug.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kalininalab/alphafold_non_docker/HEAD/dummy_test/query/ranking_debug.json -------------------------------------------------------------------------------- /dummy_test/query/relaxed_model_1.pdb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kalininalab/alphafold_non_docker/HEAD/dummy_test/query/relaxed_model_1.pdb -------------------------------------------------------------------------------- /dummy_test/query/result_model_1.pkl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kalininalab/alphafold_non_docker/HEAD/dummy_test/query/result_model_1.pkl -------------------------------------------------------------------------------- /dummy_test/query/timings.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kalininalab/alphafold_non_docker/HEAD/dummy_test/query/timings.json -------------------------------------------------------------------------------- /dummy_test/query/unrelaxed_model_1.pdb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kalininalab/alphafold_non_docker/HEAD/dummy_test/query/unrelaxed_model_1.pdb -------------------------------------------------------------------------------- /example/query.fasta: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kalininalab/alphafold_non_docker/HEAD/example/query.fasta -------------------------------------------------------------------------------- /run_alphafold.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kalininalab/alphafold_non_docker/HEAD/run_alphafold.sh --------------------------------------------------------------------------------