├── .gitignore ├── LICENSE ├── README.md ├── __init__.py ├── ctc_raw_data ├── challenge │ └── .gitkeep └── train │ └── .gitkeep ├── data └── .gitkeep ├── embedtrack ├── __init__.py ├── _tests │ ├── __init__.py │ └── test_augment.py ├── criterions │ ├── __init__.py │ ├── loss.py │ └── lovasz_losses.py ├── ctc_metrics │ ├── CTC_eval │ │ └── .gitkeep │ ├── __init__.py │ └── eval_ctc.py ├── datasets │ ├── __init__.py │ ├── dataset.py │ ├── generate_crops.py │ └── prepare_data.py ├── infer │ ├── __init__.py │ ├── infer_ctc_data.py │ ├── infer_ctc_data.spec │ └── inference.py ├── models │ ├── BranchedERFNet.py │ ├── __init__.py │ ├── erfnet.py │ └── net.py ├── scripts │ ├── __init__.py │ ├── calc_overlap_cells.py │ ├── infer_all.py │ └── train_all.py ├── train │ ├── __init__.py │ ├── run_training_pipeline.py │ └── train.py └── utils │ ├── __init__.py │ ├── clustering.py │ ├── create_dicts.py │ ├── logging.py │ ├── transforms.py │ ├── utils.py │ └── visualize.py ├── environment.yml ├── gifs 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