├── .gitignore ├── LICENSE ├── README.md ├── data ├── crispri │ ├── ENCODE-E2G_Extended_Predictions.tsv │ ├── ENCODE-E2G_Predictions.tsv │ ├── EPCrisprBenchmark_ensemble_data_GRCh38.K562_AllFeatures_NAfilled.FullModel.tsv │ └── EPCrisprBenchmark_ensemble_data_GRCh38.K562_ENCDO000AAD_ENCFF325RTP_DNaseOnly_features_NAfilled.tsv └── feature_table │ ├── model_ablation_encode_e2g.tsv │ └── model_ablation_encode_e2g_extended.tsv ├── demo.ipynb ├── encode_e2g.py ├── environment.yml ├── figs ├── ENCODE-E2G_Extended_Model_Ablation_Barplot_Delta_Precision.pdf ├── ENCODE-E2G_Extended_Model_Ablation_Barplot_Delta_auPR.pdf ├── ENCODE-E2G_Extended_PR_curve_0-10k.pdf ├── ENCODE-E2G_Extended_PR_curve_100k-2500k.pdf ├── ENCODE-E2G_Extended_PR_curve_10k-100k.pdf ├── ENCODE-E2G_Extended_PR_curve_all.pdf ├── ENCODE-E2G_Extended_SHAP_scores_barplot.pdf ├── ENCODE-E2G_Extended_SHAP_scores_dotplot.pdf ├── ENCODE-E2G_Model_Ablation_Barplot_Delta_Precision.pdf ├── ENCODE-E2G_Model_Ablation_Barplot_Delta_auPR.pdf ├── ENCODE-E2G_PR_curve_0-10k.pdf ├── ENCODE-E2G_PR_curve_100k-2500k.pdf ├── ENCODE-E2G_PR_curve_10k-100k.pdf ├── ENCODE-E2G_PR_curve_all.pdf ├── ENCODE-E2G_SHAP_scores_barplot.pdf └── ENCODE-E2G_SHAP_scores_dotplot.pdf ├── models ├── model_ENCODE-E2G without ABC_test_chr1.pkl ├── model_ENCODE-E2G without ABC_test_chr10.pkl ├── model_ENCODE-E2G without ABC_test_chr11.pkl ├── model_ENCODE-E2G without ABC_test_chr12.pkl ├── model_ENCODE-E2G without ABC_test_chr13.pkl ├── model_ENCODE-E2G without ABC_test_chr14.pkl ├── model_ENCODE-E2G without ABC_test_chr15.pkl ├── model_ENCODE-E2G without ABC_test_chr16.pkl ├── model_ENCODE-E2G without ABC_test_chr17.pkl ├── model_ENCODE-E2G without ABC_test_chr18.pkl ├── model_ENCODE-E2G without ABC_test_chr19.pkl ├── model_ENCODE-E2G without ABC_test_chr2.pkl ├── model_ENCODE-E2G without ABC_test_chr20.pkl ├── model_ENCODE-E2G without ABC_test_chr21.pkl ├── model_ENCODE-E2G without ABC_test_chr22.pkl ├── model_ENCODE-E2G without ABC_test_chr3.pkl ├── model_ENCODE-E2G without ABC_test_chr4.pkl ├── model_ENCODE-E2G without ABC_test_chr5.pkl ├── model_ENCODE-E2G without ABC_test_chr6.pkl ├── model_ENCODE-E2G without ABC_test_chr7.pkl ├── model_ENCODE-E2G without ABC_test_chr8.pkl ├── model_ENCODE-E2G without ABC_test_chr9.pkl ├── model_ENCODE-E2G without ABC_test_chrX.pkl ├── model_ENCODE-E2G without contact_test_chr1.pkl ├── model_ENCODE-E2G without contact_test_chr10.pkl ├── model_ENCODE-E2G without contact_test_chr11.pkl ├── model_ENCODE-E2G without contact_test_chr12.pkl ├── model_ENCODE-E2G without contact_test_chr13.pkl ├── model_ENCODE-E2G without contact_test_chr14.pkl ├── model_ENCODE-E2G without contact_test_chr15.pkl ├── model_ENCODE-E2G without contact_test_chr16.pkl ├── model_ENCODE-E2G without contact_test_chr17.pkl ├── model_ENCODE-E2G without contact_test_chr18.pkl ├── model_ENCODE-E2G without contact_test_chr19.pkl ├── model_ENCODE-E2G without contact_test_chr2.pkl ├── model_ENCODE-E2G without contact_test_chr20.pkl ├── model_ENCODE-E2G without contact_test_chr21.pkl ├── model_ENCODE-E2G without contact_test_chr22.pkl ├── model_ENCODE-E2G without contact_test_chr3.pkl ├── model_ENCODE-E2G without contact_test_chr4.pkl ├── model_ENCODE-E2G without contact_test_chr5.pkl ├── model_ENCODE-E2G without contact_test_chr6.pkl ├── model_ENCODE-E2G without contact_test_chr7.pkl ├── model_ENCODE-E2G without contact_test_chr8.pkl ├── model_ENCODE-E2G without contact_test_chr9.pkl ├── model_ENCODE-E2G without contact_test_chrX.pkl ├── model_ENCODE-E2G without distance and contact_test_chr1.pkl ├── model_ENCODE-E2G without distance and contact_test_chr10.pkl ├── model_ENCODE-E2G without distance and contact_test_chr11.pkl ├── model_ENCODE-E2G without distance and contact_test_chr12.pkl ├── model_ENCODE-E2G without distance and contact_test_chr13.pkl ├── model_ENCODE-E2G without distance and contact_test_chr14.pkl ├── model_ENCODE-E2G without distance and contact_test_chr15.pkl ├── model_ENCODE-E2G without distance and contact_test_chr16.pkl ├── model_ENCODE-E2G without distance and contact_test_chr17.pkl ├── model_ENCODE-E2G without distance and contact_test_chr18.pkl ├── model_ENCODE-E2G without distance and contact_test_chr19.pkl ├── model_ENCODE-E2G without distance and contact_test_chr2.pkl ├── model_ENCODE-E2G without distance and contact_test_chr20.pkl ├── model_ENCODE-E2G without distance and contact_test_chr21.pkl ├── model_ENCODE-E2G without distance and contact_test_chr22.pkl ├── model_ENCODE-E2G without distance and contact_test_chr3.pkl ├── model_ENCODE-E2G without distance and contact_test_chr4.pkl ├── model_ENCODE-E2G without distance and contact_test_chr5.pkl ├── model_ENCODE-E2G without distance and contact_test_chr6.pkl ├── model_ENCODE-E2G without distance and contact_test_chr7.pkl ├── model_ENCODE-E2G without distance and contact_test_chr8.pkl ├── model_ENCODE-E2G without distance and contact_test_chr9.pkl ├── model_ENCODE-E2G without distance and contact_test_chrX.pkl ├── model_ENCODE-E2G without distance_test_chr1.pkl ├── model_ENCODE-E2G without distance_test_chr10.pkl ├── model_ENCODE-E2G without distance_test_chr11.pkl ├── model_ENCODE-E2G without distance_test_chr12.pkl ├── model_ENCODE-E2G without distance_test_chr13.pkl ├── model_ENCODE-E2G without distance_test_chr14.pkl ├── model_ENCODE-E2G without distance_test_chr15.pkl ├── model_ENCODE-E2G without distance_test_chr16.pkl ├── model_ENCODE-E2G without distance_test_chr17.pkl ├── model_ENCODE-E2G without distance_test_chr18.pkl ├── model_ENCODE-E2G without distance_test_chr19.pkl ├── model_ENCODE-E2G without distance_test_chr2.pkl ├── model_ENCODE-E2G without distance_test_chr20.pkl ├── model_ENCODE-E2G without distance_test_chr21.pkl ├── model_ENCODE-E2G without distance_test_chr22.pkl ├── model_ENCODE-E2G without distance_test_chr3.pkl ├── model_ENCODE-E2G without distance_test_chr4.pkl ├── model_ENCODE-E2G without distance_test_chr5.pkl ├── model_ENCODE-E2G without distance_test_chr6.pkl ├── model_ENCODE-E2G without distance_test_chr7.pkl ├── model_ENCODE-E2G without distance_test_chr8.pkl ├── model_ENCODE-E2G without distance_test_chr9.pkl ├── model_ENCODE-E2G without distance_test_chrX.pkl ├── model_ENCODE-E2G without enhancer activity_test_chr1.pkl ├── model_ENCODE-E2G without enhancer activity_test_chr10.pkl ├── model_ENCODE-E2G without enhancer activity_test_chr11.pkl ├── model_ENCODE-E2G without enhancer activity_test_chr12.pkl ├── model_ENCODE-E2G without enhancer activity_test_chr13.pkl ├── model_ENCODE-E2G without enhancer activity_test_chr14.pkl ├── model_ENCODE-E2G without enhancer activity_test_chr15.pkl ├── model_ENCODE-E2G without enhancer activity_test_chr16.pkl ├── model_ENCODE-E2G without enhancer activity_test_chr17.pkl ├── model_ENCODE-E2G without enhancer activity_test_chr18.pkl ├── model_ENCODE-E2G without enhancer activity_test_chr19.pkl ├── model_ENCODE-E2G without enhancer activity_test_chr2.pkl ├── model_ENCODE-E2G without enhancer activity_test_chr20.pkl ├── model_ENCODE-E2G without enhancer activity_test_chr21.pkl ├── model_ENCODE-E2G without enhancer activity_test_chr22.pkl ├── model_ENCODE-E2G without enhancer activity_test_chr3.pkl ├── model_ENCODE-E2G without enhancer activity_test_chr4.pkl ├── model_ENCODE-E2G without enhancer activity_test_chr5.pkl ├── model_ENCODE-E2G without enhancer activity_test_chr6.pkl ├── model_ENCODE-E2G without enhancer activity_test_chr7.pkl ├── model_ENCODE-E2G without enhancer activity_test_chr8.pkl ├── model_ENCODE-E2G without enhancer activity_test_chr9.pkl ├── model_ENCODE-E2G without enhancer activity_test_chrX.pkl ├── model_ENCODE-E2G without nearby enhancers_test_chr1.pkl ├── model_ENCODE-E2G without nearby enhancers_test_chr10.pkl ├── model_ENCODE-E2G without nearby enhancers_test_chr11.pkl ├── model_ENCODE-E2G without nearby enhancers_test_chr12.pkl ├── model_ENCODE-E2G without nearby enhancers_test_chr13.pkl ├── model_ENCODE-E2G without nearby enhancers_test_chr14.pkl ├── model_ENCODE-E2G without nearby enhancers_test_chr15.pkl ├── model_ENCODE-E2G without nearby enhancers_test_chr16.pkl ├── model_ENCODE-E2G without nearby enhancers_test_chr17.pkl ├── model_ENCODE-E2G without nearby enhancers_test_chr18.pkl ├── model_ENCODE-E2G without nearby enhancers_test_chr19.pkl ├── model_ENCODE-E2G without nearby enhancers_test_chr2.pkl ├── model_ENCODE-E2G without nearby enhancers_test_chr20.pkl ├── model_ENCODE-E2G without nearby enhancers_test_chr21.pkl ├── model_ENCODE-E2G without nearby enhancers_test_chr22.pkl ├── model_ENCODE-E2G without nearby enhancers_test_chr3.pkl ├── model_ENCODE-E2G without nearby enhancers_test_chr4.pkl ├── model_ENCODE-E2G without nearby enhancers_test_chr5.pkl ├── model_ENCODE-E2G without nearby enhancers_test_chr6.pkl ├── model_ENCODE-E2G without nearby enhancers_test_chr7.pkl ├── model_ENCODE-E2G without nearby enhancers_test_chr8.pkl ├── model_ENCODE-E2G without nearby enhancers_test_chr9.pkl ├── model_ENCODE-E2G without nearby enhancers_test_chrX.pkl ├── model_ENCODE-E2G without promoter activity_test_chr1.pkl ├── model_ENCODE-E2G without promoter activity_test_chr10.pkl ├── model_ENCODE-E2G without promoter activity_test_chr11.pkl ├── model_ENCODE-E2G without promoter activity_test_chr12.pkl ├── model_ENCODE-E2G without promoter activity_test_chr13.pkl ├── model_ENCODE-E2G without promoter activity_test_chr14.pkl ├── model_ENCODE-E2G without promoter activity_test_chr15.pkl ├── model_ENCODE-E2G without promoter activity_test_chr16.pkl ├── model_ENCODE-E2G without promoter activity_test_chr17.pkl ├── model_ENCODE-E2G without promoter activity_test_chr18.pkl ├── model_ENCODE-E2G without promoter activity_test_chr19.pkl ├── model_ENCODE-E2G without promoter activity_test_chr2.pkl ├── model_ENCODE-E2G without promoter activity_test_chr20.pkl ├── model_ENCODE-E2G without promoter activity_test_chr21.pkl ├── model_ENCODE-E2G without promoter activity_test_chr22.pkl ├── model_ENCODE-E2G without promoter activity_test_chr3.pkl ├── model_ENCODE-E2G without promoter activity_test_chr4.pkl ├── model_ENCODE-E2G without promoter activity_test_chr5.pkl ├── model_ENCODE-E2G without promoter activity_test_chr6.pkl ├── model_ENCODE-E2G without promoter activity_test_chr7.pkl ├── model_ENCODE-E2G without promoter activity_test_chr8.pkl ├── model_ENCODE-E2G without promoter activity_test_chr9.pkl ├── model_ENCODE-E2G without promoter activity_test_chrX.pkl ├── model_ENCODE-E2G without promoter class_test_chr1.pkl ├── model_ENCODE-E2G without promoter class_test_chr10.pkl ├── model_ENCODE-E2G without promoter class_test_chr11.pkl ├── model_ENCODE-E2G without promoter class_test_chr12.pkl ├── model_ENCODE-E2G without promoter class_test_chr13.pkl ├── model_ENCODE-E2G without promoter class_test_chr14.pkl ├── model_ENCODE-E2G without promoter class_test_chr15.pkl ├── model_ENCODE-E2G without promoter class_test_chr16.pkl ├── model_ENCODE-E2G without promoter class_test_chr17.pkl ├── model_ENCODE-E2G without promoter class_test_chr18.pkl ├── model_ENCODE-E2G without promoter class_test_chr19.pkl ├── model_ENCODE-E2G without promoter class_test_chr2.pkl ├── model_ENCODE-E2G without promoter class_test_chr20.pkl ├── model_ENCODE-E2G without promoter class_test_chr21.pkl ├── model_ENCODE-E2G without promoter class_test_chr22.pkl ├── model_ENCODE-E2G without promoter class_test_chr3.pkl ├── model_ENCODE-E2G without promoter class_test_chr4.pkl ├── model_ENCODE-E2G without promoter class_test_chr5.pkl ├── model_ENCODE-E2G without promoter class_test_chr6.pkl ├── model_ENCODE-E2G without promoter class_test_chr7.pkl ├── model_ENCODE-E2G without promoter class_test_chr8.pkl ├── model_ENCODE-E2G without promoter class_test_chr9.pkl ├── model_ENCODE-E2G without promoter class_test_chrX.pkl ├── model_ENCODE-E2G_Extended without ABC_test_chr1.pkl ├── model_ENCODE-E2G_Extended without ABC_test_chr10.pkl ├── model_ENCODE-E2G_Extended without ABC_test_chr11.pkl ├── model_ENCODE-E2G_Extended without ABC_test_chr12.pkl ├── model_ENCODE-E2G_Extended without ABC_test_chr13.pkl ├── model_ENCODE-E2G_Extended without ABC_test_chr14.pkl ├── model_ENCODE-E2G_Extended without ABC_test_chr15.pkl ├── model_ENCODE-E2G_Extended without ABC_test_chr16.pkl ├── model_ENCODE-E2G_Extended without ABC_test_chr17.pkl ├── model_ENCODE-E2G_Extended without ABC_test_chr18.pkl ├── model_ENCODE-E2G_Extended without ABC_test_chr19.pkl ├── model_ENCODE-E2G_Extended without ABC_test_chr2.pkl ├── model_ENCODE-E2G_Extended without ABC_test_chr20.pkl ├── model_ENCODE-E2G_Extended without ABC_test_chr21.pkl ├── model_ENCODE-E2G_Extended without ABC_test_chr22.pkl ├── model_ENCODE-E2G_Extended without ABC_test_chr3.pkl ├── model_ENCODE-E2G_Extended without ABC_test_chr4.pkl ├── model_ENCODE-E2G_Extended without ABC_test_chr5.pkl ├── model_ENCODE-E2G_Extended without ABC_test_chr6.pkl ├── model_ENCODE-E2G_Extended without ABC_test_chr7.pkl ├── model_ENCODE-E2G_Extended without ABC_test_chr8.pkl ├── model_ENCODE-E2G_Extended without ABC_test_chr9.pkl ├── model_ENCODE-E2G_Extended without ABC_test_chrX.pkl ├── model_ENCODE-E2G_Extended without CTCF_test_chr1.pkl ├── model_ENCODE-E2G_Extended without CTCF_test_chr10.pkl ├── model_ENCODE-E2G_Extended without CTCF_test_chr11.pkl ├── model_ENCODE-E2G_Extended without CTCF_test_chr12.pkl ├── model_ENCODE-E2G_Extended without CTCF_test_chr13.pkl ├── model_ENCODE-E2G_Extended without CTCF_test_chr14.pkl ├── model_ENCODE-E2G_Extended without CTCF_test_chr15.pkl ├── model_ENCODE-E2G_Extended without CTCF_test_chr16.pkl ├── model_ENCODE-E2G_Extended without CTCF_test_chr17.pkl ├── model_ENCODE-E2G_Extended without CTCF_test_chr18.pkl ├── model_ENCODE-E2G_Extended without CTCF_test_chr19.pkl ├── model_ENCODE-E2G_Extended without CTCF_test_chr2.pkl ├── model_ENCODE-E2G_Extended without CTCF_test_chr20.pkl ├── model_ENCODE-E2G_Extended without CTCF_test_chr21.pkl ├── model_ENCODE-E2G_Extended without CTCF_test_chr22.pkl ├── model_ENCODE-E2G_Extended without CTCF_test_chr3.pkl ├── model_ENCODE-E2G_Extended without CTCF_test_chr4.pkl ├── model_ENCODE-E2G_Extended without CTCF_test_chr5.pkl ├── model_ENCODE-E2G_Extended without CTCF_test_chr6.pkl ├── model_ENCODE-E2G_Extended without CTCF_test_chr7.pkl ├── model_ENCODE-E2G_Extended without CTCF_test_chr8.pkl ├── model_ENCODE-E2G_Extended without CTCF_test_chr9.pkl ├── model_ENCODE-E2G_Extended without CTCF_test_chrX.pkl ├── model_ENCODE-E2G_Extended without EP300_test_chr1.pkl ├── model_ENCODE-E2G_Extended without EP300_test_chr10.pkl ├── model_ENCODE-E2G_Extended without EP300_test_chr11.pkl ├── model_ENCODE-E2G_Extended without EP300_test_chr12.pkl ├── model_ENCODE-E2G_Extended without EP300_test_chr13.pkl ├── model_ENCODE-E2G_Extended without EP300_test_chr14.pkl ├── model_ENCODE-E2G_Extended without EP300_test_chr15.pkl ├── model_ENCODE-E2G_Extended without EP300_test_chr16.pkl ├── model_ENCODE-E2G_Extended without EP300_test_chr17.pkl ├── model_ENCODE-E2G_Extended without EP300_test_chr18.pkl ├── model_ENCODE-E2G_Extended without EP300_test_chr19.pkl ├── model_ENCODE-E2G_Extended without EP300_test_chr2.pkl ├── model_ENCODE-E2G_Extended without EP300_test_chr20.pkl ├── model_ENCODE-E2G_Extended without EP300_test_chr21.pkl ├── model_ENCODE-E2G_Extended without EP300_test_chr22.pkl ├── model_ENCODE-E2G_Extended without EP300_test_chr3.pkl ├── model_ENCODE-E2G_Extended without EP300_test_chr4.pkl ├── model_ENCODE-E2G_Extended without EP300_test_chr5.pkl ├── model_ENCODE-E2G_Extended without EP300_test_chr6.pkl ├── model_ENCODE-E2G_Extended without EP300_test_chr7.pkl ├── model_ENCODE-E2G_Extended without EP300_test_chr8.pkl ├── model_ENCODE-E2G_Extended without EP300_test_chr9.pkl ├── model_ENCODE-E2G_Extended without EP300_test_chrX.pkl ├── model_ENCODE-E2G_Extended without Hi-C and distance_test_chr1.pkl ├── model_ENCODE-E2G_Extended without Hi-C and distance_test_chr10.pkl ├── model_ENCODE-E2G_Extended without Hi-C and distance_test_chr11.pkl ├── model_ENCODE-E2G_Extended without Hi-C and distance_test_chr12.pkl ├── model_ENCODE-E2G_Extended without Hi-C and distance_test_chr13.pkl ├── model_ENCODE-E2G_Extended without Hi-C and distance_test_chr14.pkl ├── model_ENCODE-E2G_Extended without Hi-C and distance_test_chr15.pkl ├── model_ENCODE-E2G_Extended without Hi-C and distance_test_chr16.pkl ├── model_ENCODE-E2G_Extended without Hi-C and distance_test_chr17.pkl ├── model_ENCODE-E2G_Extended without Hi-C and distance_test_chr18.pkl ├── model_ENCODE-E2G_Extended without Hi-C and distance_test_chr19.pkl ├── model_ENCODE-E2G_Extended without Hi-C and distance_test_chr2.pkl ├── model_ENCODE-E2G_Extended without Hi-C and distance_test_chr20.pkl ├── model_ENCODE-E2G_Extended without Hi-C and distance_test_chr21.pkl ├── model_ENCODE-E2G_Extended without Hi-C and distance_test_chr22.pkl ├── model_ENCODE-E2G_Extended without Hi-C and distance_test_chr3.pkl ├── model_ENCODE-E2G_Extended without Hi-C and distance_test_chr4.pkl ├── model_ENCODE-E2G_Extended without Hi-C and distance_test_chr5.pkl ├── model_ENCODE-E2G_Extended without Hi-C and distance_test_chr6.pkl ├── model_ENCODE-E2G_Extended without Hi-C and distance_test_chr7.pkl ├── model_ENCODE-E2G_Extended without Hi-C and distance_test_chr8.pkl ├── model_ENCODE-E2G_Extended without Hi-C and distance_test_chr9.pkl ├── model_ENCODE-E2G_Extended without Hi-C and distance_test_chrX.pkl ├── model_ENCODE-E2G_Extended without Hi-C_test_chr1.pkl ├── model_ENCODE-E2G_Extended without Hi-C_test_chr10.pkl ├── model_ENCODE-E2G_Extended without Hi-C_test_chr11.pkl ├── model_ENCODE-E2G_Extended without Hi-C_test_chr12.pkl ├── model_ENCODE-E2G_Extended without Hi-C_test_chr13.pkl ├── model_ENCODE-E2G_Extended without Hi-C_test_chr14.pkl ├── model_ENCODE-E2G_Extended without Hi-C_test_chr15.pkl ├── model_ENCODE-E2G_Extended without Hi-C_test_chr16.pkl ├── model_ENCODE-E2G_Extended without Hi-C_test_chr17.pkl ├── model_ENCODE-E2G_Extended without Hi-C_test_chr18.pkl ├── model_ENCODE-E2G_Extended without Hi-C_test_chr19.pkl ├── model_ENCODE-E2G_Extended without Hi-C_test_chr2.pkl ├── model_ENCODE-E2G_Extended without Hi-C_test_chr20.pkl ├── model_ENCODE-E2G_Extended without Hi-C_test_chr21.pkl ├── model_ENCODE-E2G_Extended without Hi-C_test_chr22.pkl ├── model_ENCODE-E2G_Extended without Hi-C_test_chr3.pkl ├── model_ENCODE-E2G_Extended without Hi-C_test_chr4.pkl ├── model_ENCODE-E2G_Extended without Hi-C_test_chr5.pkl ├── model_ENCODE-E2G_Extended without Hi-C_test_chr6.pkl ├── model_ENCODE-E2G_Extended without Hi-C_test_chr7.pkl ├── model_ENCODE-E2G_Extended without Hi-C_test_chr8.pkl ├── model_ENCODE-E2G_Extended without Hi-C_test_chr9.pkl ├── model_ENCODE-E2G_Extended without Hi-C_test_chrX.pkl ├── model_ENCODE-E2G_Extended without conservation_test_chr1.pkl ├── model_ENCODE-E2G_Extended without conservation_test_chr10.pkl ├── model_ENCODE-E2G_Extended without conservation_test_chr11.pkl ├── model_ENCODE-E2G_Extended without conservation_test_chr12.pkl ├── model_ENCODE-E2G_Extended without conservation_test_chr13.pkl ├── model_ENCODE-E2G_Extended without conservation_test_chr14.pkl ├── model_ENCODE-E2G_Extended without conservation_test_chr15.pkl ├── model_ENCODE-E2G_Extended without conservation_test_chr16.pkl ├── model_ENCODE-E2G_Extended without conservation_test_chr17.pkl ├── model_ENCODE-E2G_Extended without conservation_test_chr18.pkl ├── model_ENCODE-E2G_Extended without conservation_test_chr19.pkl ├── model_ENCODE-E2G_Extended without conservation_test_chr2.pkl ├── model_ENCODE-E2G_Extended without conservation_test_chr20.pkl ├── model_ENCODE-E2G_Extended without conservation_test_chr21.pkl ├── model_ENCODE-E2G_Extended without conservation_test_chr22.pkl ├── model_ENCODE-E2G_Extended without conservation_test_chr3.pkl ├── model_ENCODE-E2G_Extended without conservation_test_chr4.pkl ├── model_ENCODE-E2G_Extended without conservation_test_chr5.pkl ├── model_ENCODE-E2G_Extended without conservation_test_chr6.pkl ├── model_ENCODE-E2G_Extended without conservation_test_chr7.pkl ├── model_ENCODE-E2G_Extended without conservation_test_chr8.pkl ├── model_ENCODE-E2G_Extended without conservation_test_chr9.pkl ├── model_ENCODE-E2G_Extended without conservation_test_chrX.pkl ├── model_ENCODE-E2G_Extended without contact_test_chr1.pkl ├── model_ENCODE-E2G_Extended without contact_test_chr10.pkl ├── model_ENCODE-E2G_Extended without contact_test_chr11.pkl ├── model_ENCODE-E2G_Extended without contact_test_chr12.pkl ├── model_ENCODE-E2G_Extended without contact_test_chr13.pkl ├── model_ENCODE-E2G_Extended without contact_test_chr14.pkl ├── model_ENCODE-E2G_Extended without contact_test_chr15.pkl ├── model_ENCODE-E2G_Extended without contact_test_chr16.pkl ├── model_ENCODE-E2G_Extended without contact_test_chr17.pkl ├── model_ENCODE-E2G_Extended without contact_test_chr18.pkl ├── model_ENCODE-E2G_Extended without contact_test_chr19.pkl ├── model_ENCODE-E2G_Extended without contact_test_chr2.pkl ├── model_ENCODE-E2G_Extended without contact_test_chr20.pkl ├── model_ENCODE-E2G_Extended without contact_test_chr21.pkl ├── model_ENCODE-E2G_Extended without contact_test_chr22.pkl ├── model_ENCODE-E2G_Extended without contact_test_chr3.pkl ├── model_ENCODE-E2G_Extended without contact_test_chr4.pkl ├── model_ENCODE-E2G_Extended without contact_test_chr5.pkl ├── model_ENCODE-E2G_Extended without contact_test_chr6.pkl ├── model_ENCODE-E2G_Extended without contact_test_chr7.pkl ├── model_ENCODE-E2G_Extended without contact_test_chr8.pkl ├── model_ENCODE-E2G_Extended without contact_test_chr9.pkl ├── model_ENCODE-E2G_Extended without contact_test_chrX.pkl ├── model_ENCODE-E2G_Extended without correlations_test_chr1.pkl ├── model_ENCODE-E2G_Extended without correlations_test_chr10.pkl ├── model_ENCODE-E2G_Extended without correlations_test_chr11.pkl ├── model_ENCODE-E2G_Extended without correlations_test_chr12.pkl ├── model_ENCODE-E2G_Extended without correlations_test_chr13.pkl ├── model_ENCODE-E2G_Extended without correlations_test_chr14.pkl ├── model_ENCODE-E2G_Extended without correlations_test_chr15.pkl ├── model_ENCODE-E2G_Extended without correlations_test_chr16.pkl ├── model_ENCODE-E2G_Extended without correlations_test_chr17.pkl ├── model_ENCODE-E2G_Extended without correlations_test_chr18.pkl ├── model_ENCODE-E2G_Extended without correlations_test_chr19.pkl ├── model_ENCODE-E2G_Extended without correlations_test_chr2.pkl ├── model_ENCODE-E2G_Extended without correlations_test_chr20.pkl ├── model_ENCODE-E2G_Extended without correlations_test_chr21.pkl ├── model_ENCODE-E2G_Extended without correlations_test_chr22.pkl ├── model_ENCODE-E2G_Extended without correlations_test_chr3.pkl ├── model_ENCODE-E2G_Extended without correlations_test_chr4.pkl ├── model_ENCODE-E2G_Extended without correlations_test_chr5.pkl ├── model_ENCODE-E2G_Extended without correlations_test_chr6.pkl ├── model_ENCODE-E2G_Extended without correlations_test_chr7.pkl ├── model_ENCODE-E2G_Extended without correlations_test_chr8.pkl ├── model_ENCODE-E2G_Extended without correlations_test_chr9.pkl ├── model_ENCODE-E2G_Extended without correlations_test_chrX.pkl ├── model_ENCODE-E2G_Extended without distance and contact_test_chr1.pkl ├── model_ENCODE-E2G_Extended without distance and contact_test_chr10.pkl ├── model_ENCODE-E2G_Extended without distance and contact_test_chr11.pkl ├── model_ENCODE-E2G_Extended without distance and contact_test_chr12.pkl ├── model_ENCODE-E2G_Extended without distance and contact_test_chr13.pkl ├── model_ENCODE-E2G_Extended without distance and contact_test_chr14.pkl ├── model_ENCODE-E2G_Extended without distance and contact_test_chr15.pkl ├── model_ENCODE-E2G_Extended without distance and contact_test_chr16.pkl ├── model_ENCODE-E2G_Extended without distance and contact_test_chr17.pkl ├── model_ENCODE-E2G_Extended without distance and contact_test_chr18.pkl ├── model_ENCODE-E2G_Extended without distance and contact_test_chr19.pkl ├── model_ENCODE-E2G_Extended without distance and contact_test_chr2.pkl ├── model_ENCODE-E2G_Extended without distance and contact_test_chr20.pkl ├── model_ENCODE-E2G_Extended without distance and contact_test_chr21.pkl ├── model_ENCODE-E2G_Extended without distance and contact_test_chr22.pkl ├── model_ENCODE-E2G_Extended without distance and contact_test_chr3.pkl ├── model_ENCODE-E2G_Extended without distance and contact_test_chr4.pkl ├── model_ENCODE-E2G_Extended without distance and contact_test_chr5.pkl ├── model_ENCODE-E2G_Extended without distance and contact_test_chr6.pkl ├── model_ENCODE-E2G_Extended without distance and contact_test_chr7.pkl ├── model_ENCODE-E2G_Extended without distance and contact_test_chr8.pkl ├── model_ENCODE-E2G_Extended without distance and contact_test_chr9.pkl ├── model_ENCODE-E2G_Extended without distance and contact_test_chrX.pkl ├── model_ENCODE-E2G_Extended without distance_test_chr1.pkl ├── model_ENCODE-E2G_Extended without distance_test_chr10.pkl ├── model_ENCODE-E2G_Extended without distance_test_chr11.pkl ├── model_ENCODE-E2G_Extended without distance_test_chr12.pkl ├── model_ENCODE-E2G_Extended without distance_test_chr13.pkl ├── model_ENCODE-E2G_Extended without distance_test_chr14.pkl ├── model_ENCODE-E2G_Extended without distance_test_chr15.pkl ├── model_ENCODE-E2G_Extended without distance_test_chr16.pkl ├── model_ENCODE-E2G_Extended without distance_test_chr17.pkl ├── model_ENCODE-E2G_Extended without distance_test_chr18.pkl ├── model_ENCODE-E2G_Extended without distance_test_chr19.pkl ├── model_ENCODE-E2G_Extended without distance_test_chr2.pkl ├── model_ENCODE-E2G_Extended without distance_test_chr20.pkl ├── model_ENCODE-E2G_Extended without distance_test_chr21.pkl ├── model_ENCODE-E2G_Extended without distance_test_chr22.pkl ├── model_ENCODE-E2G_Extended without distance_test_chr3.pkl ├── model_ENCODE-E2G_Extended without distance_test_chr4.pkl ├── model_ENCODE-E2G_Extended without distance_test_chr5.pkl ├── model_ENCODE-E2G_Extended without distance_test_chr6.pkl ├── model_ENCODE-E2G_Extended without distance_test_chr7.pkl ├── model_ENCODE-E2G_Extended without distance_test_chr8.pkl ├── model_ENCODE-E2G_Extended without distance_test_chr9.pkl ├── model_ENCODE-E2G_Extended without distance_test_chrX.pkl ├── model_ENCODE-E2G_Extended without enhancer activity_test_chr1.pkl ├── model_ENCODE-E2G_Extended without enhancer activity_test_chr10.pkl ├── model_ENCODE-E2G_Extended without enhancer activity_test_chr11.pkl ├── model_ENCODE-E2G_Extended without enhancer activity_test_chr12.pkl ├── model_ENCODE-E2G_Extended without enhancer activity_test_chr13.pkl ├── model_ENCODE-E2G_Extended without enhancer activity_test_chr14.pkl ├── model_ENCODE-E2G_Extended without enhancer activity_test_chr15.pkl ├── model_ENCODE-E2G_Extended without enhancer activity_test_chr16.pkl ├── model_ENCODE-E2G_Extended without enhancer activity_test_chr17.pkl ├── model_ENCODE-E2G_Extended without enhancer activity_test_chr18.pkl ├── model_ENCODE-E2G_Extended without enhancer activity_test_chr19.pkl ├── model_ENCODE-E2G_Extended without enhancer activity_test_chr2.pkl ├── model_ENCODE-E2G_Extended without enhancer activity_test_chr20.pkl ├── model_ENCODE-E2G_Extended without enhancer activity_test_chr21.pkl ├── model_ENCODE-E2G_Extended without enhancer activity_test_chr22.pkl ├── model_ENCODE-E2G_Extended without enhancer activity_test_chr3.pkl ├── model_ENCODE-E2G_Extended without enhancer activity_test_chr4.pkl ├── model_ENCODE-E2G_Extended without enhancer activity_test_chr5.pkl ├── model_ENCODE-E2G_Extended without enhancer activity_test_chr6.pkl ├── model_ENCODE-E2G_Extended without enhancer activity_test_chr7.pkl ├── model_ENCODE-E2G_Extended without enhancer activity_test_chr8.pkl ├── model_ENCODE-E2G_Extended without enhancer activity_test_chr9.pkl ├── model_ENCODE-E2G_Extended without enhancer activity_test_chrX.pkl ├── model_ENCODE-E2G_Extended without gradients_test_chr1.pkl ├── model_ENCODE-E2G_Extended without gradients_test_chr10.pkl ├── model_ENCODE-E2G_Extended without gradients_test_chr11.pkl ├── model_ENCODE-E2G_Extended without gradients_test_chr12.pkl ├── model_ENCODE-E2G_Extended without gradients_test_chr13.pkl ├── model_ENCODE-E2G_Extended without gradients_test_chr14.pkl ├── model_ENCODE-E2G_Extended without gradients_test_chr15.pkl ├── model_ENCODE-E2G_Extended without gradients_test_chr16.pkl ├── model_ENCODE-E2G_Extended without gradients_test_chr17.pkl ├── model_ENCODE-E2G_Extended without gradients_test_chr18.pkl ├── model_ENCODE-E2G_Extended without gradients_test_chr19.pkl ├── model_ENCODE-E2G_Extended without gradients_test_chr2.pkl ├── model_ENCODE-E2G_Extended without gradients_test_chr20.pkl ├── model_ENCODE-E2G_Extended without gradients_test_chr21.pkl ├── model_ENCODE-E2G_Extended without gradients_test_chr22.pkl ├── model_ENCODE-E2G_Extended without gradients_test_chr3.pkl ├── model_ENCODE-E2G_Extended without gradients_test_chr4.pkl ├── model_ENCODE-E2G_Extended without gradients_test_chr5.pkl ├── model_ENCODE-E2G_Extended without gradients_test_chr6.pkl ├── model_ENCODE-E2G_Extended without gradients_test_chr7.pkl ├── model_ENCODE-E2G_Extended without gradients_test_chr8.pkl ├── model_ENCODE-E2G_Extended without gradients_test_chr9.pkl ├── model_ENCODE-E2G_Extended without gradients_test_chrX.pkl ├── model_ENCODE-E2G_Extended without nearby enhancers_test_chr1.pkl ├── model_ENCODE-E2G_Extended without nearby enhancers_test_chr10.pkl ├── model_ENCODE-E2G_Extended without nearby enhancers_test_chr11.pkl ├── model_ENCODE-E2G_Extended without nearby enhancers_test_chr12.pkl ├── model_ENCODE-E2G_Extended without nearby enhancers_test_chr13.pkl ├── model_ENCODE-E2G_Extended without nearby enhancers_test_chr14.pkl ├── model_ENCODE-E2G_Extended without nearby enhancers_test_chr15.pkl ├── model_ENCODE-E2G_Extended without nearby enhancers_test_chr16.pkl ├── model_ENCODE-E2G_Extended without nearby enhancers_test_chr17.pkl ├── model_ENCODE-E2G_Extended without nearby enhancers_test_chr18.pkl ├── model_ENCODE-E2G_Extended without nearby enhancers_test_chr19.pkl ├── model_ENCODE-E2G_Extended without nearby enhancers_test_chr2.pkl ├── model_ENCODE-E2G_Extended without nearby enhancers_test_chr20.pkl ├── model_ENCODE-E2G_Extended without nearby enhancers_test_chr21.pkl ├── model_ENCODE-E2G_Extended without nearby enhancers_test_chr22.pkl ├── model_ENCODE-E2G_Extended without nearby enhancers_test_chr3.pkl ├── model_ENCODE-E2G_Extended without nearby enhancers_test_chr4.pkl ├── model_ENCODE-E2G_Extended without nearby enhancers_test_chr5.pkl ├── model_ENCODE-E2G_Extended without nearby enhancers_test_chr6.pkl ├── model_ENCODE-E2G_Extended without nearby enhancers_test_chr7.pkl ├── model_ENCODE-E2G_Extended without nearby enhancers_test_chr8.pkl ├── model_ENCODE-E2G_Extended without nearby enhancers_test_chr9.pkl ├── model_ENCODE-E2G_Extended without nearby enhancers_test_chrX.pkl ├── model_ENCODE-E2G_Extended without promoter activity_test_chr1.pkl ├── model_ENCODE-E2G_Extended without promoter activity_test_chr10.pkl ├── model_ENCODE-E2G_Extended without promoter activity_test_chr11.pkl ├── model_ENCODE-E2G_Extended without promoter activity_test_chr12.pkl ├── model_ENCODE-E2G_Extended without promoter activity_test_chr13.pkl ├── model_ENCODE-E2G_Extended without promoter activity_test_chr14.pkl ├── model_ENCODE-E2G_Extended without promoter activity_test_chr15.pkl ├── model_ENCODE-E2G_Extended without promoter activity_test_chr16.pkl ├── model_ENCODE-E2G_Extended without promoter activity_test_chr17.pkl ├── model_ENCODE-E2G_Extended without promoter activity_test_chr18.pkl ├── model_ENCODE-E2G_Extended without promoter activity_test_chr19.pkl ├── model_ENCODE-E2G_Extended without promoter activity_test_chr2.pkl ├── model_ENCODE-E2G_Extended without promoter activity_test_chr20.pkl ├── model_ENCODE-E2G_Extended without promoter activity_test_chr21.pkl ├── model_ENCODE-E2G_Extended without promoter activity_test_chr22.pkl ├── model_ENCODE-E2G_Extended without promoter activity_test_chr3.pkl ├── model_ENCODE-E2G_Extended without promoter activity_test_chr4.pkl ├── model_ENCODE-E2G_Extended without promoter activity_test_chr5.pkl ├── model_ENCODE-E2G_Extended without promoter activity_test_chr6.pkl ├── model_ENCODE-E2G_Extended without promoter activity_test_chr7.pkl ├── model_ENCODE-E2G_Extended without promoter activity_test_chr8.pkl ├── model_ENCODE-E2G_Extended without promoter activity_test_chr9.pkl ├── model_ENCODE-E2G_Extended without promoter activity_test_chrX.pkl ├── model_ENCODE-E2G_Extended without promoter class_test_chr1.pkl ├── model_ENCODE-E2G_Extended without promoter class_test_chr10.pkl ├── model_ENCODE-E2G_Extended without promoter class_test_chr11.pkl ├── model_ENCODE-E2G_Extended without promoter class_test_chr12.pkl ├── model_ENCODE-E2G_Extended without promoter class_test_chr13.pkl ├── model_ENCODE-E2G_Extended without promoter class_test_chr14.pkl ├── model_ENCODE-E2G_Extended without promoter class_test_chr15.pkl ├── model_ENCODE-E2G_Extended without promoter class_test_chr16.pkl ├── model_ENCODE-E2G_Extended without promoter class_test_chr17.pkl ├── model_ENCODE-E2G_Extended without promoter class_test_chr18.pkl ├── model_ENCODE-E2G_Extended without promoter class_test_chr19.pkl ├── model_ENCODE-E2G_Extended without promoter class_test_chr2.pkl ├── model_ENCODE-E2G_Extended without promoter class_test_chr20.pkl ├── model_ENCODE-E2G_Extended without promoter class_test_chr21.pkl ├── model_ENCODE-E2G_Extended without promoter class_test_chr22.pkl ├── model_ENCODE-E2G_Extended without promoter class_test_chr3.pkl ├── model_ENCODE-E2G_Extended without promoter class_test_chr4.pkl ├── model_ENCODE-E2G_Extended without promoter class_test_chr5.pkl ├── model_ENCODE-E2G_Extended without promoter class_test_chr6.pkl ├── model_ENCODE-E2G_Extended without promoter class_test_chr7.pkl ├── model_ENCODE-E2G_Extended without promoter class_test_chr8.pkl ├── model_ENCODE-E2G_Extended without promoter class_test_chr9.pkl ├── model_ENCODE-E2G_Extended without promoter class_test_chrX.pkl ├── model_ENCODE-E2G_Extended_test_chr1.pkl ├── model_ENCODE-E2G_Extended_test_chr10.pkl ├── model_ENCODE-E2G_Extended_test_chr11.pkl ├── model_ENCODE-E2G_Extended_test_chr12.pkl ├── model_ENCODE-E2G_Extended_test_chr13.pkl ├── model_ENCODE-E2G_Extended_test_chr14.pkl ├── model_ENCODE-E2G_Extended_test_chr15.pkl ├── model_ENCODE-E2G_Extended_test_chr16.pkl ├── model_ENCODE-E2G_Extended_test_chr17.pkl ├── model_ENCODE-E2G_Extended_test_chr18.pkl ├── model_ENCODE-E2G_Extended_test_chr19.pkl ├── model_ENCODE-E2G_Extended_test_chr2.pkl ├── model_ENCODE-E2G_Extended_test_chr20.pkl ├── model_ENCODE-E2G_Extended_test_chr21.pkl ├── model_ENCODE-E2G_Extended_test_chr22.pkl ├── model_ENCODE-E2G_Extended_test_chr3.pkl ├── model_ENCODE-E2G_Extended_test_chr4.pkl ├── model_ENCODE-E2G_Extended_test_chr5.pkl ├── model_ENCODE-E2G_Extended_test_chr6.pkl ├── model_ENCODE-E2G_Extended_test_chr7.pkl ├── model_ENCODE-E2G_Extended_test_chr8.pkl ├── model_ENCODE-E2G_Extended_test_chr9.pkl ├── model_ENCODE-E2G_Extended_test_chrX.pkl ├── model_ENCODE-E2G_test_chr1.pkl ├── model_ENCODE-E2G_test_chr10.pkl ├── model_ENCODE-E2G_test_chr11.pkl ├── model_ENCODE-E2G_test_chr12.pkl ├── model_ENCODE-E2G_test_chr13.pkl ├── model_ENCODE-E2G_test_chr14.pkl ├── model_ENCODE-E2G_test_chr15.pkl ├── model_ENCODE-E2G_test_chr16.pkl ├── model_ENCODE-E2G_test_chr17.pkl ├── model_ENCODE-E2G_test_chr18.pkl ├── model_ENCODE-E2G_test_chr19.pkl ├── model_ENCODE-E2G_test_chr2.pkl ├── model_ENCODE-E2G_test_chr20.pkl ├── model_ENCODE-E2G_test_chr21.pkl ├── 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