├── .editorconfig ├── .github └── workflows │ ├── ci.yml │ ├── publish.yml │ └── release-check.yml ├── .gitignore ├── .style.yapf ├── LICENSE ├── Makefile ├── README.rst ├── pyproject.toml ├── requirements.txt ├── samsift ├── __init__.py ├── increment_version.py ├── samsift ├── samsift.py ├── samsift_norm_sam.py └── version.py ├── setup.cfg └── tests ├── Makefile ├── profiling ├── .gitignore └── Makefile ├── qnames.txt ├── test.bam ├── test.sam └── tests ├── .gitignore ├── Makefile ├── seqheadless.bam ├── test.bam └── test.sam /.editorconfig: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/karel-brinda/samsift/HEAD/.editorconfig -------------------------------------------------------------------------------- /.github/workflows/ci.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/karel-brinda/samsift/HEAD/.github/workflows/ci.yml 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