├── CallRTMB ├── DESCRIPTION ├── NAMESPACE ├── R │ └── linreg.R └── src │ ├── Makevars │ └── linreg.cpp ├── LICENSE ├── Makefile ├── README.md ├── RTMB ├── DESCRIPTION ├── NAMESPACE ├── NEWS ├── R │ ├── 00roxygen.R │ ├── RcppExports.R │ ├── adcomplex.R │ ├── adjoint.R │ ├── advector.R │ ├── bessel.R │ ├── chol.R │ ├── determinant.R │ ├── distributions.R │ ├── eigen.R │ ├── expAv.R │ ├── experimental.R │ ├── integrate.R │ ├── interpol.R │ ├── methods.R │ ├── mvgauss.R │ ├── osa.R │ ├── poshess.R │ ├── sim.R │ ├── sugar.R │ └── zzz.R ├── inst │ ├── include │ │ ├── CallRTMB.hpp │ │ ├── RTMB.h │ │ ├── RTMB_stubs.cpp │ │ ├── TMB.h │ │ ├── config.h │ │ └── rtmb_set_shared_pointers.cpp │ └── tinytest │ │ ├── spatial_data.R │ │ ├── spde_data.RData │ │ ├── test-advector.R │ │ ├── test-bessel.R │ │ ├── test-distributions.R │ │ ├── test-factorize.R │ │ ├── test-model-spatial.R │ │ ├── test-model-spde.R │ │ ├── test-sparse.R │ │ ├── test-spline.R │ │ └── test-tape.R ├── man │ ├── AD.Rd │ ├── ADapply.Rd │ ├── ADcomplex.Rd │ ├── ADconstruct.Rd │ ├── ADintegrate.Rd │ ├── ADjoint.Rd │ ├── ADmatrix.Rd │ ├── ADoverload.Rd │ ├── ADsparse.Rd │ ├── ADvector.Rd │ ├── Distributions.Rd │ ├── Interpolation.Rd │ ├── MVgauss.Rd │ ├── OSA-residuals.Rd │ ├── RTMB-package.Rd │ ├── Simulation.Rd │ ├── TMB-interface.Rd │ ├── Tape.Rd │ ├── expAv.Rd │ └── grapes-twiddle-grapes.Rd ├── src │ ├── Makevars │ ├── Makevars.win │ ├── RTMB.cpp │ ├── RTMB.h │ ├── RTMB_tape.cpp │ ├── RcppExports.cpp │ ├── TMB.cpp │ ├── TMB.h │ ├── bessel.cpp │ ├── config.h │ ├── distributions.cpp │ ├── expAv.cpp │ ├── integrate.cpp │ ├── interpol.cpp │ ├── lapack.cpp │ ├── math.cpp │ ├── math_complex.cpp │ ├── misc.cpp │ ├── poshess.cpp │ └── subset.cpp ├── tests │ └── tinytest.R └── vignettes │ ├── RTMB-advanced.rmd │ ├── RTMB-introduction.rmd │ └── RTMB-tips.rmd ├── RTMBode ├── DESCRIPTION ├── NAMESPACE ├── R │ └── odesolve.R ├── man │ └── ode.Rd └── src │ └── odesolve.c ├── design_notes ├── README.md ├── complex.R ├── complex.cpp ├── example.R └── example.cpp ├── distr.R ├── rtmbTest ├── DESCRIPTION ├── NAMESPACE ├── R │ ├── sdv_multi_compact.R │ └── sdv_multi_data.R └── man │ └── sdvmulti.Rd ├── rtmbXtra ├── DESCRIPTION ├── NAMESPACE ├── R │ ├── 00roxygen.R │ └── RcppExports.R ├── man │ ├── logit_invcloglog.Rd │ ├── logit_pnorm.Rd │ └── logspace_gamma.Rd └── src │ ├── Makevars │ ├── RcppExports.cpp │ ├── local_stubs.cpp │ └── test.cpp └── tmb_examples ├── Makefile ├── README.md ├── adaptive_integration.R ├── ar1_4D.R ├── checkConsistency.R ├── compois.R ├── dataeval.R ├── hmm.R ├── linreg.R ├── matern.R ├── mvrw.R ├── rickervalidation.R ├── sam.R ├── sam_data.R ├── sdv_multi.R ├── sdv_multi_compact.R ├── sdv_multi_data.R ├── spa_gauss.R ├── spatial.R ├── spatial_data.R ├── spde.R ├── tools └── unittest.R ├── transform.R ├── transform2.R ├── tweedie.R └── tweedie_data.R /CallRTMB/DESCRIPTION: -------------------------------------------------------------------------------- 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