├── .github └── ISSUE_TEMPLATE.md ├── .gitignore ├── .travis.yml ├── LICENSE ├── Makefile ├── README.md ├── TMB ├── DESCRIPTION ├── NAMESPACE ├── NEWS ├── R │ ├── TMB.R │ ├── abi_table.R │ ├── benchmark.R │ ├── checker.R │ ├── config.R │ ├── dotCall.R │ ├── examples.R │ ├── gdbsource.R │ ├── graph_transform.R │ ├── header_tool.R │ ├── normalize.R │ ├── sdreport.R │ ├── setupRStudio.R │ ├── tmbprofile.R │ ├── tmbroot.R │ ├── utils.R │ ├── validation.R │ └── zzz.R ├── inst │ ├── CITATION │ ├── COPYRIGHTS │ ├── examples │ │ ├── ar1xar1.R │ │ ├── ar1xar1.cpp │ │ ├── linreg_parallel.R │ │ ├── linreg_parallel.cpp │ │ ├── randomregression.R │ │ ├── randomregression.cpp │ │ ├── simple.R │ │ └── simple.cpp │ ├── include │ │ ├── Eigen │ │ │ ├── Cholesky │ │ │ ├── CholmodSupport │ │ │ ├── Core │ │ │ ├── Dense │ │ │ ├── Eigen │ │ │ ├── Eigenvalues │ │ │ ├── Geometry │ │ │ ├── Householder │ │ │ ├── IterativeLinearSolvers │ │ │ ├── Jacobi │ │ │ ├── KLUSupport │ │ │ ├── LU │ │ │ ├── MetisSupport │ │ │ ├── OrderingMethods │ │ │ ├── PaStiXSupport │ │ │ ├── PardisoSupport │ │ │ ├── QR │ │ │ ├── QtAlignedMalloc │ │ │ ├── SPQRSupport │ │ │ ├── SVD │ │ │ ├── Sparse │ │ │ ├── SparseCholesky │ │ │ ├── SparseCore │ │ │ ├── SparseLU │ │ │ ├── SparseQR │ │ │ ├── StdDeque │ │ │ ├── StdList │ │ │ ├── StdVector │ │ │ ├── SuperLUSupport │ │ │ ├── UmfPackSupport │ │ │ └── src │ │ │ │ ├── Cholesky │ │ │ │ ├── LDLT.h │ │ │ │ ├── LLT.h │ │ │ │ └── LLT_LAPACKE.h │ │ │ │ ├── CholmodSupport │ │ │ │ └── CholmodSupport.h │ │ │ │ ├── Core │ │ │ │ ├── ArithmeticSequence.h │ │ │ │ ├── Array.h │ │ │ │ ├── ArrayBase.h │ │ │ │ ├── ArrayWrapper.h │ │ │ │ ├── Assign.h │ │ │ │ ├── AssignEvaluator.h │ │ │ │ ├── Assign_MKL.h │ │ │ │ ├── BandMatrix.h │ │ │ │ ├── Block.h │ │ │ │ ├── BooleanRedux.h │ │ │ │ ├── CommaInitializer.h │ │ │ │ ├── ConditionEstimator.h │ │ │ │ ├── CoreEvaluators.h │ │ │ │ ├── CoreIterators.h │ │ │ │ ├── CwiseBinaryOp.h │ │ │ │ ├── CwiseNullaryOp.h │ │ │ │ ├── CwiseTernaryOp.h │ │ │ │ ├── CwiseUnaryOp.h │ │ │ │ ├── CwiseUnaryView.h │ │ │ │ ├── DenseBase.h │ │ │ │ ├── DenseCoeffsBase.h │ │ │ │ ├── DenseStorage.h │ │ │ │ ├── Diagonal.h │ │ │ │ ├── DiagonalMatrix.h │ │ │ │ ├── DiagonalProduct.h │ │ │ │ ├── Dot.h │ │ │ │ ├── EigenBase.h │ │ │ │ ├── ForceAlignedAccess.h │ │ │ │ ├── Fuzzy.h │ │ │ │ ├── GeneralProduct.h │ │ │ │ ├── GenericPacketMath.h │ │ │ │ ├── GlobalFunctions.h │ │ │ │ ├── IO.h │ │ │ │ ├── IndexedView.h │ │ │ │ ├── Inverse.h │ │ │ │ ├── Map.h │ │ │ │ ├── MapBase.h │ │ │ │ ├── MathFunctions.h │ │ │ │ ├── MathFunctionsImpl.h │ │ │ │ ├── Matrix.h │ │ │ │ ├── MatrixBase.h │ │ │ │ ├── NestByValue.h │ │ │ │ ├── NoAlias.h │ │ │ │ ├── NumTraits.h │ │ │ │ ├── PartialReduxEvaluator.h │ │ │ │ ├── PermutationMatrix.h │ │ │ │ ├── PlainObjectBase.h │ │ │ │ ├── Product.h │ │ │ │ ├── ProductEvaluators.h │ │ │ │ ├── Random.h │ │ │ │ ├── Redux.h │ │ │ │ ├── Ref.h │ │ │ │ ├── Replicate.h │ │ │ │ ├── Reshaped.h │ │ │ │ ├── ReturnByValue.h │ │ │ │ ├── Reverse.h │ │ │ │ ├── Select.h │ │ │ │ ├── SelfAdjointView.h │ │ │ │ ├── SelfCwiseBinaryOp.h │ │ │ │ ├── Solve.h │ │ │ │ ├── SolveTriangular.h │ │ │ │ ├── SolverBase.h │ │ │ │ ├── StableNorm.h │ │ │ │ ├── StlIterators.h │ │ │ │ ├── Stride.h │ │ │ │ ├── Swap.h │ │ │ │ ├── Transpose.h │ │ │ │ ├── Transpositions.h │ │ │ │ ├── TriangularMatrix.h │ │ │ │ ├── VectorBlock.h │ │ │ │ ├── VectorwiseOp.h │ │ │ │ ├── Visitor.h │ │ │ │ ├── arch │ │ │ │ │ ├── AVX │ │ │ │ │ │ ├── Complex.h │ │ │ │ │ │ ├── MathFunctions.h │ │ │ │ │ │ ├── PacketMath.h │ │ │ │ │ │ └── TypeCasting.h │ │ │ │ │ ├── AVX512 │ │ │ │ │ │ ├── Complex.h │ │ │ │ │ │ ├── MathFunctions.h │ │ │ │ │ │ ├── PacketMath.h │ │ │ │ │ │ └── TypeCasting.h │ │ │ │ │ ├── AltiVec │ │ │ │ │ │ ├── Complex.h │ │ │ │ │ │ ├── MathFunctions.h │ │ │ │ │ │ ├── MatrixProduct.h │ │ │ │ │ │ ├── MatrixProductCommon.h │ │ │ │ │ │ ├── MatrixProductMMA.h │ │ │ │ │ │ └── PacketMath.h │ │ │ │ │ ├── CUDA │ │ │ │ │ │ └── Complex.h │ │ │ │ │ ├── Default │ │ │ │ │ │ ├── BFloat16.h │ │ │ │ │ │ ├── ConjHelper.h │ │ │ │ │ │ ├── GenericPacketMathFunctions.h │ │ │ │ │ │ ├── GenericPacketMathFunctionsFwd.h │ │ │ │ │ │ ├── Half.h │ │ │ │ │ │ ├── Settings.h │ │ │ │ │ │ └── TypeCasting.h │ │ │ │ │ ├── GPU │ │ │ │ │ │ ├── MathFunctions.h │ │ │ │ │ │ ├── PacketMath.h │ │ │ │ │ │ └── TypeCasting.h │ │ │ │ │ ├── HIP │ │ │ │ │ │ └── hcc │ │ │ │ │ │ │ └── math_constants.h │ │ │ │ │ ├── MSA │ │ │ │ │ │ ├── Complex.h │ │ │ │ │ │ ├── MathFunctions.h │ │ │ │ │ │ └── PacketMath.h │ │ │ │ │ ├── NEON │ │ │ │ │ │ ├── Complex.h │ │ │ │ │ │ ├── GeneralBlockPanelKernel.h │ │ │ │ │ │ ├── MathFunctions.h │ │ │ │ │ │ ├── PacketMath.h │ │ │ │ │ │ └── TypeCasting.h │ │ │ │ │ ├── SSE │ │ │ │ │ │ ├── Complex.h │ │ │ │ │ │ ├── MathFunctions.h │ │ │ │ │ │ ├── PacketMath.h │ │ │ │ │ │ └── TypeCasting.h │ │ │ │ │ ├── SVE │ │ │ │ │ │ ├── MathFunctions.h │ │ │ │ │ │ ├── PacketMath.h │ │ │ │ │ │ └── TypeCasting.h │ │ │ │ │ ├── SYCL │ │ │ │ │ │ ├── InteropHeaders.h │ │ │ │ │ │ ├── MathFunctions.h │ │ │ │ │ │ ├── PacketMath.h │ │ │ │ │ │ ├── SyclMemoryModel.h │ │ │ │ │ │ └── TypeCasting.h │ │ │ │ │ └── ZVector │ │ │ │ │ │ ├── Complex.h │ │ │ │ │ │ ├── MathFunctions.h │ │ │ │ │ │ └── PacketMath.h │ │ │ │ ├── functors │ │ │ │ │ ├── AssignmentFunctors.h │ │ │ │ │ ├── BinaryFunctors.h │ │ │ │ │ ├── NullaryFunctors.h │ │ │ │ │ ├── StlFunctors.h │ │ │ │ │ ├── TernaryFunctors.h │ │ │ │ │ └── UnaryFunctors.h │ │ │ │ ├── products │ │ │ │ │ ├── GeneralBlockPanelKernel.h │ │ │ │ │ ├── GeneralMatrixMatrix.h │ │ │ │ │ ├── GeneralMatrixMatrixTriangular.h │ │ │ │ │ ├── GeneralMatrixMatrixTriangular_BLAS.h │ │ │ │ │ ├── GeneralMatrixMatrix_BLAS.h │ │ │ │ │ ├── GeneralMatrixVector.h │ │ │ │ │ ├── GeneralMatrixVector_BLAS.h │ │ │ │ │ ├── Parallelizer.h │ │ │ │ │ ├── SelfadjointMatrixMatrix.h │ │ │ │ │ ├── SelfadjointMatrixMatrix_BLAS.h │ │ │ │ │ ├── SelfadjointMatrixVector.h │ │ │ │ │ ├── SelfadjointMatrixVector_BLAS.h │ │ │ │ │ ├── SelfadjointProduct.h │ │ │ │ │ ├── SelfadjointRank2Update.h │ │ │ │ │ ├── TriangularMatrixMatrix.h │ │ │ │ │ ├── TriangularMatrixMatrix_BLAS.h │ │ │ │ │ ├── TriangularMatrixVector.h │ │ │ │ │ ├── TriangularMatrixVector_BLAS.h │ │ │ │ │ ├── TriangularSolverMatrix.h │ │ │ │ │ ├── TriangularSolverMatrix_BLAS.h │ │ │ │ │ └── TriangularSolverVector.h │ │ │ │ └── util │ │ │ │ │ ├── BlasUtil.h │ │ │ │ │ ├── ConfigureVectorization.h │ │ │ │ │ ├── Constants.h │ │ │ │ │ ├── DisableStupidWarnings.h │ │ │ │ │ ├── ForwardDeclarations.h │ │ │ │ │ ├── IndexedViewHelper.h │ │ │ │ │ ├── IntegralConstant.h │ │ │ │ │ ├── MKL_support.h │ │ │ │ │ ├── Macros.h │ │ │ │ │ ├── Memory.h │ │ │ │ │ ├── Meta.h │ │ │ │ │ ├── NonMPL2.h │ │ │ │ │ ├── ReenableStupidWarnings.h │ │ │ │ │ ├── ReshapedHelper.h │ │ │ │ │ ├── StaticAssert.h │ │ │ │ │ ├── SymbolicIndex.h │ │ │ │ │ └── XprHelper.h │ │ │ │ ├── Eigenvalues │ │ │ │ ├── ComplexEigenSolver.h │ │ │ │ ├── ComplexSchur.h │ │ │ │ ├── ComplexSchur_LAPACKE.h │ │ │ │ ├── EigenSolver.h │ │ │ │ ├── GeneralizedEigenSolver.h │ │ │ │ ├── GeneralizedSelfAdjointEigenSolver.h │ │ │ │ ├── HessenbergDecomposition.h │ │ │ │ ├── MatrixBaseEigenvalues.h │ │ │ │ ├── RealQZ.h │ │ │ │ ├── RealSchur.h │ │ │ │ ├── RealSchur_LAPACKE.h │ │ │ │ ├── SelfAdjointEigenSolver.h │ │ │ │ ├── SelfAdjointEigenSolver_LAPACKE.h │ │ │ │ └── Tridiagonalization.h │ │ │ │ ├── Geometry │ │ │ │ ├── AlignedBox.h │ │ │ │ ├── AngleAxis.h │ │ │ │ ├── EulerAngles.h │ │ │ │ ├── Homogeneous.h │ │ │ │ ├── Hyperplane.h │ │ │ │ ├── OrthoMethods.h │ │ │ │ ├── ParametrizedLine.h │ │ │ │ ├── Quaternion.h │ │ │ │ ├── Rotation2D.h │ │ │ │ ├── RotationBase.h │ │ │ │ ├── Scaling.h │ │ │ │ ├── Transform.h │ │ │ │ ├── Translation.h │ │ │ │ ├── Umeyama.h │ │ │ │ └── arch │ │ │ │ │ └── Geometry_SIMD.h │ │ │ │ ├── Householder │ │ │ │ ├── BlockHouseholder.h │ │ │ │ ├── Householder.h │ │ │ │ └── HouseholderSequence.h │ │ │ │ ├── IterativeLinearSolvers │ │ │ │ ├── BasicPreconditioners.h │ │ │ │ ├── BiCGSTAB.h │ │ │ │ ├── ConjugateGradient.h │ │ │ │ ├── IncompleteCholesky.h │ │ │ │ ├── IncompleteLUT.h │ │ │ │ ├── IterativeSolverBase.h │ │ │ │ ├── LeastSquareConjugateGradient.h │ │ │ │ └── SolveWithGuess.h │ │ │ │ ├── Jacobi │ │ │ │ └── Jacobi.h │ │ │ │ ├── KLUSupport │ │ │ │ └── KLUSupport.h │ │ │ │ ├── LU │ │ │ │ ├── Determinant.h │ │ │ │ ├── FullPivLU.h │ │ │ │ ├── InverseImpl.h │ │ │ │ ├── PartialPivLU.h │ │ │ │ ├── PartialPivLU_LAPACKE.h │ │ │ │ └── arch │ │ │ │ │ └── InverseSize4.h │ │ │ │ ├── MetisSupport │ │ │ │ └── MetisSupport.h │ │ │ │ ├── OrderingMethods │ │ │ │ ├── Amd.h │ │ │ │ ├── Eigen_Colamd.h │ │ │ │ └── Ordering.h │ │ │ │ ├── PaStiXSupport │ │ │ │ └── PaStiXSupport.h │ │ │ │ ├── PardisoSupport │ │ │ │ └── PardisoSupport.h │ │ │ │ ├── QR │ │ │ │ ├── ColPivHouseholderQR.h │ │ │ │ ├── ColPivHouseholderQR_LAPACKE.h │ │ │ │ ├── CompleteOrthogonalDecomposition.h │ │ │ │ ├── FullPivHouseholderQR.h │ │ │ │ ├── HouseholderQR.h │ │ │ │ └── HouseholderQR_LAPACKE.h │ │ │ │ ├── SPQRSupport │ │ │ │ └── SuiteSparseQRSupport.h │ │ │ │ ├── SVD │ │ │ │ ├── BDCSVD.h │ │ │ │ ├── JacobiSVD.h │ │ │ │ ├── JacobiSVD_LAPACKE.h │ │ │ │ ├── SVDBase.h │ │ │ │ └── UpperBidiagonalization.h │ │ │ │ ├── SparseCholesky │ │ │ │ ├── SimplicialCholesky.h │ │ │ │ └── SimplicialCholesky_impl.h │ │ │ │ ├── SparseCore │ │ │ │ ├── AmbiVector.h │ │ │ │ ├── CompressedStorage.h │ │ │ │ ├── ConservativeSparseSparseProduct.h │ │ │ │ ├── MappedSparseMatrix.h │ │ │ │ ├── SparseAssign.h │ │ │ │ ├── SparseBlock.h │ │ │ │ ├── SparseColEtree.h │ │ │ │ ├── SparseCompressedBase.h │ │ │ │ ├── SparseCwiseBinaryOp.h │ │ │ │ ├── SparseCwiseUnaryOp.h │ │ │ │ ├── SparseDenseProduct.h │ │ │ │ ├── SparseDiagonalProduct.h │ │ │ │ ├── SparseDot.h │ │ │ │ ├── SparseFuzzy.h │ │ │ │ ├── SparseMap.h │ │ │ │ ├── SparseMatrix.h │ │ │ │ ├── SparseMatrixBase.h │ │ │ │ ├── SparsePermutation.h │ │ │ │ ├── SparseProduct.h │ │ │ │ ├── SparseRedux.h │ │ │ │ ├── SparseRef.h │ │ │ │ ├── SparseSelfAdjointView.h │ │ │ │ ├── SparseSolverBase.h │ │ │ │ ├── SparseSparseProductWithPruning.h │ │ │ │ ├── SparseTranspose.h │ │ │ │ ├── SparseTriangularView.h │ │ │ │ ├── SparseUtil.h │ │ │ │ ├── SparseVector.h │ │ │ │ ├── SparseView.h │ │ │ │ └── TriangularSolver.h │ │ │ │ ├── SparseLU │ │ │ │ ├── SparseLU.h │ │ │ │ ├── SparseLUImpl.h │ │ │ │ ├── SparseLU_Memory.h │ │ │ │ ├── SparseLU_Structs.h │ │ │ │ ├── SparseLU_SupernodalMatrix.h │ │ │ │ ├── SparseLU_Utils.h │ │ │ │ ├── SparseLU_column_bmod.h │ │ │ │ ├── SparseLU_column_dfs.h │ │ │ │ ├── SparseLU_copy_to_ucol.h │ │ │ │ ├── SparseLU_gemm_kernel.h │ │ │ │ ├── SparseLU_heap_relax_snode.h │ │ │ │ ├── SparseLU_kernel_bmod.h │ │ │ │ ├── SparseLU_panel_bmod.h │ │ │ │ ├── SparseLU_panel_dfs.h │ │ │ │ ├── SparseLU_pivotL.h │ │ │ │ ├── SparseLU_pruneL.h │ │ │ │ └── SparseLU_relax_snode.h │ │ │ │ ├── SparseQR │ │ │ │ └── SparseQR.h │ │ │ │ ├── StlSupport │ │ │ │ ├── StdDeque.h │ │ │ │ ├── StdList.h │ │ │ │ ├── StdVector.h │ │ │ │ └── details.h │ │ │ │ ├── SuperLUSupport │ │ │ │ └── SuperLUSupport.h │ │ │ │ ├── UmfPackSupport │ │ │ │ └── UmfPackSupport.h │ │ │ │ ├── misc │ │ │ │ ├── Image.h │ │ │ │ ├── Kernel.h │ │ │ │ ├── RealSvd2x2.h │ │ │ │ ├── blas.h │ │ │ │ ├── lapack.h │ │ │ │ ├── lapacke.h │ │ │ │ └── lapacke_mangling.h │ │ │ │ └── plugins │ │ │ │ ├── ArrayCwiseBinaryOps.h │ │ │ │ ├── ArrayCwiseUnaryOps.h │ │ │ │ ├── BlockMethods.h │ │ │ │ ├── CommonCwiseBinaryOps.h │ │ │ │ ├── CommonCwiseUnaryOps.h │ │ │ │ ├── IndexedViewMethods.h │ │ │ │ ├── MatrixCwiseBinaryOps.h │ │ │ │ ├── MatrixCwiseUnaryOps.h │ │ │ │ └── ReshapedMethods.h │ │ ├── EigenWarnings │ │ │ └── DisableStupidWarnings │ │ ├── Rstream.hpp │ │ ├── TMB.hpp │ │ ├── TMBad │ │ │ ├── TMBad.cpp │ │ │ ├── TMBad.hpp │ │ │ ├── ad_blas.hpp │ │ │ ├── checkpoint.hpp │ │ │ ├── code_generator.hpp │ │ │ ├── compile.hpp │ │ │ ├── compression.hpp │ │ │ ├── config.hpp │ │ │ ├── eigen_numtraits.hpp │ │ │ ├── global.hpp │ │ │ ├── graph2dot.hpp │ │ │ ├── graph_transform.hpp │ │ │ ├── integrate.hpp │ │ │ ├── radix.hpp │ │ │ ├── tmbad_allow_comparison.hpp │ │ │ └── vectorize.hpp │ │ ├── Vectorize.hpp │ │ ├── atomic_convolve.hpp │ │ ├── atomic_macro.hpp │ │ ├── atomic_math.hpp │ │ ├── checkpoint_macro.hpp │ │ ├── config.hpp │ │ ├── convenience.hpp │ │ ├── convert.hpp │ │ ├── cppad │ │ │ ├── CMakeLists.txt │ │ │ ├── COPYING │ │ │ ├── CheckNumericType.h │ │ │ ├── CheckSimpleVector.h │ │ │ ├── CppAD.h │ │ │ ├── CppAD_vector.h │ │ │ ├── ErrorHandler.h │ │ │ ├── LuFactor.h │ │ │ ├── LuInvert.h │ │ │ ├── LuSolve.h │ │ │ ├── NearEqual.h │ │ │ ├── OdeErrControl.h │ │ │ ├── OdeGear.h │ │ │ ├── OdeGearControl.h │ │ │ ├── Poly.h │ │ │ ├── PowInt.h │ │ │ ├── RombergMul.h │ │ │ ├── RombergOne.h │ │ │ ├── Rosen34.h │ │ │ ├── Runge45.h │ │ │ ├── SpeedTest.h │ │ │ ├── TrackNewDel.h │ │ │ ├── base_require.hpp │ │ │ ├── check_numeric_type.hpp │ │ │ ├── check_simple_vector.hpp │ │ │ ├── configure.hpp │ │ │ ├── configure.hpp.in │ │ │ ├── cppad.hpp │ │ │ ├── elapsed_seconds.hpp │ │ │ ├── error_handler.hpp │ │ │ ├── example │ │ │ │ ├── base_adolc.hpp │ │ │ │ ├── cppad_eigen.hpp │ │ │ │ ├── eigen_plugin.hpp │ │ │ │ └── matrix_mul.hpp │ │ │ ├── index_sort.hpp │ │ │ ├── ipopt │ │ │ │ ├── solve.hpp │ │ │ │ ├── solve_callback.hpp │ │ │ │ └── solve_result.hpp │ │ │ ├── local │ │ │ │ ├── abort_recording.hpp │ │ │ │ ├── abs.hpp │ │ │ │ ├── abs_op.hpp │ │ │ │ ├── acos_op.hpp │ │ │ │ ├── ad.hpp │ │ │ │ ├── ad_assign.hpp │ │ │ │ ├── ad_binary.hpp │ │ │ │ ├── ad_ctor.hpp │ │ │ │ ├── ad_fun.hpp │ │ │ │ ├── ad_io.hpp │ │ │ │ ├── ad_tape.hpp │ │ │ │ ├── ad_valued.hpp │ │ │ │ ├── add.hpp │ │ │ │ ├── add_eq.hpp │ │ │ │ ├── add_op.hpp │ │ │ │ ├── arithmetic.hpp │ │ │ │ ├── asin_op.hpp │ │ │ │ ├── atan2.hpp │ │ │ │ ├── atan_op.hpp │ │ │ │ ├── atomic_base.hpp │ │ │ │ ├── base_complex.hpp │ │ │ │ ├── base_cond_exp.hpp │ │ │ │ ├── base_double.hpp │ │ │ │ ├── base_float.hpp │ │ │ │ ├── base_std_math.hpp │ │ │ │ ├── bender_quad.hpp │ │ │ │ ├── bool_fun.hpp │ │ │ │ ├── bool_valued.hpp │ │ │ │ ├── capacity_order.hpp │ │ │ │ ├── checkpoint.hpp │ │ │ │ ├── color_general.hpp │ │ │ │ ├── color_symmetric.hpp │ │ │ │ ├── comp_op.hpp │ │ │ │ ├── compare.hpp │ │ │ │ ├── compute_assign.hpp │ │ │ │ ├── cond_exp.hpp │ │ │ │ ├── cond_op.hpp │ │ │ │ ├── config.h.in │ │ │ │ ├── convert.hpp │ │ │ │ ├── cos_op.hpp │ │ │ │ ├── cosh_op.hpp │ │ │ │ ├── cppad_assert.hpp │ │ │ │ ├── cppad_colpack.cpp │ │ │ │ ├── cppad_colpack.hpp │ │ │ │ ├── cskip_op.hpp │ │ │ │ ├── csum_op.hpp │ │ │ │ ├── declare_ad.hpp │ │ │ │ ├── define.hpp │ │ │ │ ├── dependent.hpp │ │ │ │ ├── discrete.hpp │ │ │ │ ├── discrete_op.hpp │ │ │ │ ├── div.hpp │ │ │ │ ├── div_eq.hpp │ │ │ │ ├── div_op.hpp │ │ │ │ ├── drivers.hpp │ │ │ │ ├── epsilon.hpp │ │ │ │ ├── equal_op_seq.hpp │ │ │ │ ├── erf.hpp │ │ │ │ ├── erf_op.hpp │ │ │ │ ├── exp_op.hpp │ │ │ │ ├── for_jac_sweep.hpp │ │ │ │ ├── for_one.hpp │ │ │ │ ├── for_sparse_jac.hpp │ │ │ │ ├── for_two.hpp │ │ │ │ ├── forward.hpp │ │ │ │ ├── forward0sweep.hpp │ │ │ │ ├── forward1sweep.hpp │ │ │ │ ├── forward2sweep.hpp │ │ │ │ ├── fun_check.hpp │ │ │ │ ├── fun_construct.hpp │ │ │ │ ├── fun_eval.hpp │ │ │ │ ├── hash_code.hpp │ │ │ │ ├── hessian.hpp │ │ │ │ ├── identical.hpp │ │ │ │ ├── independent.hpp │ │ │ │ ├── integer.hpp │ │ │ │ ├── jacobian.hpp │ │ │ │ ├── kasper.hpp │ │ │ │ ├── limits.hpp │ │ │ │ ├── load_op.hpp │ │ │ │ ├── log_op.hpp │ │ │ │ ├── lu_ratio.hpp │ │ │ │ ├── math_other.hpp │ │ │ │ ├── mul.hpp │ │ │ │ ├── mul_eq.hpp │ │ │ │ ├── mul_op.hpp │ │ │ │ ├── near_equal_ext.hpp │ │ │ │ ├── num_skip.hpp │ │ │ │ ├── old_atomic.hpp │ │ │ │ ├── omp_max_thread.hpp │ │ │ │ ├── op.hpp │ │ │ │ ├── op_code.hpp │ │ │ │ ├── opt_val_hes.hpp │ │ │ │ ├── optimize.hpp │ │ │ │ ├── ordered.hpp │ │ │ │ ├── par_var.hpp │ │ │ │ ├── parallel_ad.hpp │ │ │ │ ├── parameter_op.hpp │ │ │ │ ├── player.hpp │ │ │ │ ├── pod_vector.hpp │ │ │ │ ├── pow.hpp │ │ │ │ ├── pow_op.hpp │ │ │ │ ├── print_for.hpp │ │ │ │ ├── print_op.hpp │ │ │ │ ├── prototype_op.hpp │ │ │ │ ├── recorder.hpp │ │ │ │ ├── rev_hes_sweep.hpp │ │ │ │ ├── rev_jac_sweep.hpp │ │ │ │ ├── rev_one.hpp │ │ │ │ ├── rev_sparse_hes.hpp │ │ │ │ ├── rev_sparse_jac.hpp │ │ │ │ ├── rev_two.hpp │ │ │ │ ├── reverse.hpp │ │ │ │ ├── reverse_sweep.hpp │ │ │ │ ├── sign.hpp │ │ │ │ ├── sign_op.hpp │ │ │ │ ├── sin_op.hpp │ │ │ │ ├── sinh_op.hpp │ │ │ │ ├── sparse.hpp │ │ │ │ ├── sparse_binary_op.hpp │ │ │ │ ├── sparse_hessian.hpp │ │ │ │ ├── sparse_jacobian.hpp │ │ │ │ ├── sparse_list.hpp │ │ │ │ ├── sparse_pack.hpp │ │ │ │ ├── sparse_pattern.hpp │ │ │ │ ├── sparse_set.hpp │ │ │ │ ├── sparse_unary_op.hpp │ │ │ │ ├── sqrt_op.hpp │ │ │ │ ├── std_math_ad.hpp │ │ │ │ ├── std_set.hpp │ │ │ │ ├── store_op.hpp │ │ │ │ ├── sub.hpp │ │ │ │ ├── sub_eq.hpp │ │ │ │ ├── sub_op.hpp │ │ │ │ ├── tan_op.hpp │ │ │ │ ├── tanh_op.hpp │ │ │ │ ├── tape_link.hpp │ │ │ │ ├── test_vector.hpp │ │ │ │ ├── testvector.hpp │ │ │ │ ├── unary_minus.hpp │ │ │ │ ├── unary_plus.hpp │ │ │ │ ├── undef.hpp │ │ │ │ ├── user_ad.hpp │ │ │ │ ├── value.hpp │ │ │ │ ├── var2par.hpp │ │ │ │ └── vec_ad.hpp │ │ │ ├── lu_factor.hpp │ │ │ ├── lu_invert.hpp │ │ │ ├── lu_solve.hpp │ │ │ ├── memory_leak.hpp │ │ │ ├── nan.hpp │ │ │ ├── near_equal.hpp │ │ │ ├── ode_err_control.hpp │ │ │ ├── ode_gear.hpp │ │ │ ├── ode_gear_control.hpp │ │ │ ├── omp_alloc.hpp │ │ │ ├── poly.hpp │ │ │ ├── pow_int.hpp │ │ │ ├── romberg_mul.hpp │ │ │ ├── romberg_one.hpp │ │ │ ├── rosen_34.hpp │ │ │ ├── runge_45.hpp │ │ │ ├── speed │ │ │ │ ├── det_33.hpp │ │ │ │ ├── det_by_lu.hpp │ │ │ │ ├── det_by_minor.hpp │ │ │ │ ├── det_grad_33.hpp │ │ │ │ ├── det_of_minor.hpp │ │ │ │ ├── mat_sum_sq.hpp │ │ │ │ ├── ode_evaluate.hpp │ │ │ │ ├── sparse_hes_fun.hpp │ │ │ │ ├── sparse_jac_fun.hpp │ │ │ │ └── uniform_01.hpp │ │ │ ├── speed_test.hpp │ │ │ ├── thread_alloc.hpp │ │ │ ├── time_test.hpp │ │ │ ├── track_new_del.hpp │ │ │ └── vector.hpp │ │ ├── distributions_R.hpp │ │ ├── dnorm.hpp │ │ ├── dynamic_data.hpp │ │ ├── expm.hpp │ │ ├── fft.hpp │ │ ├── lgamma.hpp │ │ ├── precompile.hpp │ │ ├── start_parallel.hpp │ │ ├── tiny_ad │ │ │ ├── atomic.hpp │ │ │ ├── bessel │ │ │ │ ├── bessel.h │ │ │ │ ├── bessel.hpp │ │ │ │ ├── bessel_i.cpp │ │ │ │ ├── bessel_j.cpp │ │ │ │ ├── bessel_k.cpp │ │ │ │ ├── bessel_y.cpp │ │ │ │ └── undefs.h │ │ │ ├── beta │ │ │ │ ├── d1mach.cpp │ │ │ │ ├── dpq.h │ │ │ │ ├── i1mach.cpp │ │ │ │ ├── nmath.h │ │ │ │ ├── pbeta.cpp │ │ │ │ ├── pbeta.hpp │ │ │ │ ├── toms708.cpp │ │ │ │ └── undefs.h │ │ │ ├── compois │ │ │ │ └── compois.hpp │ │ │ ├── gamma │ │ │ │ ├── chebyshev.cpp │ │ │ │ ├── gamma.cpp │ │ │ │ ├── gamma.hpp │ │ │ │ ├── gamma_cody.cpp │ │ │ │ ├── gammalims.cpp.not_used │ │ │ │ ├── lgamma.cpp │ │ │ │ ├── lgammacor.cpp │ │ │ │ ├── stirlerr.cpp │ │ │ │ └── undefs.h │ │ │ ├── integrate │ │ │ │ ├── integrate.cpp │ │ │ │ └── integrate.hpp │ │ │ ├── mask.hpp │ │ │ ├── robust │ │ │ │ └── distributions.hpp │ │ │ ├── tiny_ad │ │ │ │ ├── tiny_ad.hpp │ │ │ │ ├── tiny_valarray.hpp │ │ │ │ └── tiny_vec.hpp │ │ │ └── tweedie │ │ │ │ ├── tweedie.cpp │ │ │ │ └── tweedie.hpp │ │ ├── tmb_core.hpp │ │ ├── tmb_enable_header_only.hpp │ │ ├── tmb_enable_precompile.hpp │ │ ├── tmbad_atomic_macro.hpp │ │ ├── tmbutils │ │ │ ├── R_inla.hpp │ │ │ ├── array.hpp │ │ │ ├── autodiff.hpp │ │ │ ├── concat.hpp │ │ │ ├── density.hpp │ │ │ ├── getListElement.hpp │ │ │ ├── interpol.hpp │ │ │ ├── kronecker.hpp │ │ │ ├── matexp.hpp │ │ │ ├── newton.hpp │ │ │ ├── order.hpp │ │ │ ├── romberg.hpp │ │ │ ├── simplicial_inverse_subset.hpp │ │ │ ├── sparse_matrix_exponential.hpp │ │ │ ├── splines.hpp │ │ │ ├── spmat.hpp │ │ │ ├── supernodal_inverse_subset.hpp │ │ │ ├── tmbutils.hpp │ │ │ ├── tmbutils_extra.hpp │ │ │ ├── vector.hpp │ │ │ └── vectorize.hpp │ │ ├── toggle_thread_safe_R.hpp │ │ └── unsupported │ │ │ ├── CMakeLists.txt │ │ │ ├── Eigen │ │ │ ├── AdolcForward │ │ │ ├── AlignedVector3 │ │ │ ├── ArpackSupport │ │ │ ├── AutoDiff │ │ │ ├── BVH │ │ │ ├── CMakeLists.txt │ │ │ ├── CXX11 │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── Tensor │ │ │ │ ├── TensorSymmetry │ │ │ │ ├── ThreadPool │ │ │ │ └── src │ │ │ │ │ ├── Tensor │ │ │ │ │ ├── README.md │ │ │ │ │ ├── Tensor.h │ │ │ │ │ ├── TensorArgMax.h │ │ │ │ │ ├── TensorAssign.h │ │ │ │ │ ├── TensorBase.h │ │ │ │ │ ├── TensorBlock.h │ │ │ │ │ ├── TensorBroadcasting.h │ │ │ │ │ ├── TensorChipping.h │ │ │ │ │ ├── TensorConcatenation.h │ │ │ │ │ ├── TensorContraction.h │ │ │ │ │ ├── TensorContractionBlocking.h │ │ │ │ │ ├── TensorContractionCuda.h │ │ │ │ │ ├── TensorContractionGpu.h │ │ │ │ │ ├── TensorContractionMapper.h │ │ │ │ │ ├── TensorContractionSycl.h │ │ │ │ │ ├── TensorContractionThreadPool.h │ │ │ │ │ ├── TensorConversion.h │ │ │ │ │ ├── TensorConvolution.h │ │ │ │ │ ├── TensorConvolutionSycl.h │ │ │ │ │ ├── TensorCostModel.h │ │ │ │ │ ├── TensorCustomOp.h │ │ │ │ │ ├── TensorDevice.h │ │ │ │ │ ├── TensorDeviceCuda.h │ │ │ │ │ ├── TensorDeviceDefault.h │ │ │ │ │ ├── TensorDeviceGpu.h │ │ │ │ │ ├── TensorDeviceSycl.h │ │ │ │ │ ├── TensorDeviceThreadPool.h │ │ │ │ │ ├── TensorDimensionList.h │ │ │ │ │ ├── TensorDimensions.h │ │ │ │ │ ├── TensorEvalTo.h │ │ │ │ │ ├── TensorEvaluator.h │ │ │ │ │ ├── TensorExecutor.h │ │ │ │ │ ├── TensorExpr.h │ │ │ │ │ ├── TensorFFT.h │ │ │ │ │ ├── TensorFixedSize.h │ │ │ │ │ ├── TensorForcedEval.h │ │ │ │ │ ├── TensorForwardDeclarations.h │ │ │ │ │ ├── TensorFunctors.h │ │ │ │ │ ├── TensorGenerator.h │ │ │ │ │ ├── TensorGlobalFunctions.h │ │ │ │ │ ├── TensorGpuHipCudaDefines.h │ │ │ │ │ ├── TensorGpuHipCudaUndefines.h │ │ │ │ │ ├── TensorIO.h │ │ │ │ │ ├── TensorImagePatch.h │ │ │ │ │ ├── TensorIndexList.h │ │ │ │ │ ├── TensorInflation.h │ │ │ │ │ ├── TensorInitializer.h │ │ │ │ │ ├── TensorIntDiv.h │ │ │ │ │ ├── TensorLayoutSwap.h │ │ │ │ │ ├── TensorMacros.h │ │ │ │ │ ├── TensorMap.h │ │ │ │ │ ├── TensorMeta.h │ │ │ │ │ ├── TensorMorphing.h │ │ │ │ │ ├── TensorPadding.h │ │ │ │ │ ├── TensorPatch.h │ │ │ │ │ ├── TensorRandom.h │ │ │ │ │ ├── TensorReduction.h │ │ │ │ │ ├── TensorReductionCuda.h │ │ │ │ │ ├── TensorReductionGpu.h │ │ │ │ │ ├── TensorReductionSycl.h │ │ │ │ │ ├── TensorRef.h │ │ │ │ │ ├── TensorReverse.h │ │ │ │ │ ├── TensorScan.h │ │ │ │ │ ├── TensorScanSycl.h │ │ │ │ │ ├── TensorShuffling.h │ │ │ │ │ ├── TensorStorage.h │ │ │ │ │ ├── TensorStriding.h │ │ │ │ │ ├── TensorTrace.h │ │ │ │ │ ├── TensorTraits.h │ │ │ │ │ ├── TensorUInt128.h │ │ │ │ │ └── TensorVolumePatch.h │ │ │ │ │ ├── TensorSymmetry │ │ │ │ │ ├── DynamicSymmetry.h │ │ │ │ │ ├── StaticSymmetry.h │ │ │ │ │ ├── Symmetry.h │ │ │ │ │ └── util │ │ │ │ │ │ └── TemplateGroupTheory.h │ │ │ │ │ ├── ThreadPool │ │ │ │ │ ├── Barrier.h │ │ │ │ │ ├── EventCount.h │ │ │ │ │ ├── NonBlockingThreadPool.h │ │ │ │ │ ├── RunQueue.h │ │ │ │ │ ├── ThreadCancel.h │ │ │ │ │ ├── ThreadEnvironment.h │ │ │ │ │ ├── ThreadLocal.h │ │ │ │ │ ├── ThreadPoolInterface.h │ │ │ │ │ └── ThreadYield.h │ │ │ │ │ └── util │ │ │ │ │ ├── CXX11Meta.h │ │ │ │ │ ├── CXX11Workarounds.h │ │ │ │ │ ├── EmulateArray.h │ │ │ │ │ └── MaxSizeVector.h │ │ │ ├── EulerAngles │ │ │ ├── FFT │ │ │ ├── IterativeSolvers │ │ │ ├── KroneckerProduct │ │ │ ├── LevenbergMarquardt │ │ │ ├── MPRealSupport │ │ │ ├── MatrixFunctions │ │ │ ├── MoreVectorization │ │ │ ├── NonLinearOptimization │ │ │ ├── NumericalDiff │ │ │ ├── OpenGLSupport │ │ │ ├── Polynomials │ │ │ ├── Skyline │ │ │ ├── SparseExtra │ │ │ ├── SpecialFunctions │ │ │ ├── Splines │ │ │ └── src │ │ │ │ ├── AutoDiff │ │ │ │ ├── AutoDiffJacobian.h │ │ │ │ ├── AutoDiffScalar.h │ │ │ │ └── AutoDiffVector.h │ │ │ │ ├── BVH │ │ │ │ ├── BVAlgorithms.h │ │ │ │ └── KdBVH.h │ │ │ │ ├── Eigenvalues │ │ │ │ └── ArpackSelfAdjointEigenSolver.h │ │ │ │ ├── EulerAngles │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── EulerAngles.h │ │ │ │ └── EulerSystem.h │ │ │ │ ├── FFT │ │ │ │ ├── ei_fftw_impl.h │ │ │ │ └── ei_kissfft_impl.h │ │ │ │ ├── IterativeSolvers │ │ │ │ ├── ConstrainedConjGrad.h │ │ │ │ ├── DGMRES.h │ │ │ │ ├── GMRES.h │ │ │ │ ├── IDRS.h │ │ │ │ ├── IncompleteLU.h │ │ │ │ ├── IterationController.h │ │ │ │ ├── MINRES.h │ │ │ │ └── Scaling.h │ │ │ │ ├── KroneckerProduct │ │ │ │ └── KroneckerTensorProduct.h │ │ │ │ ├── LevenbergMarquardt │ │ │ │ ├── CopyrightMINPACK.txt │ │ │ │ ├── LMcovar.h │ │ │ │ ├── LMonestep.h │ │ │ │ ├── LMpar.h │ │ │ │ ├── LMqrsolv.h │ │ │ │ └── LevenbergMarquardt.h │ │ │ │ ├── MatrixFunctions │ │ │ │ ├── MatrixExponential.h │ │ │ │ ├── MatrixFunction.h │ │ │ │ ├── MatrixLogarithm.h │ │ │ │ ├── MatrixPower.h │ │ │ │ ├── MatrixSquareRoot.h │ │ │ │ └── StemFunction.h │ │ │ │ ├── MoreVectorization │ │ │ │ └── MathFunctions.h │ │ │ │ ├── NonLinearOptimization │ │ │ │ ├── HybridNonLinearSolver.h │ │ │ │ ├── LevenbergMarquardt.h │ │ │ │ ├── chkder.h │ │ │ │ ├── covar.h │ │ │ │ ├── dogleg.h │ │ │ │ ├── fdjac1.h │ │ │ │ ├── lmpar.h │ │ │ │ ├── qrsolv.h │ │ │ │ ├── r1mpyq.h │ │ │ │ ├── r1updt.h │ │ │ │ └── rwupdt.h │ │ │ │ ├── NumericalDiff │ │ │ │ └── NumericalDiff.h │ │ │ │ ├── Polynomials │ │ │ │ ├── Companion.h │ │ │ │ ├── PolynomialSolver.h │ │ │ │ └── PolynomialUtils.h │ │ │ │ ├── Skyline │ │ │ │ ├── SkylineInplaceLU.h │ │ │ │ ├── SkylineMatrix.h │ │ │ │ ├── SkylineMatrixBase.h │ │ │ │ ├── SkylineProduct.h │ │ │ │ ├── SkylineStorage.h │ │ │ │ └── SkylineUtil.h │ │ │ │ ├── SparseExtra │ │ │ │ ├── BlockOfDynamicSparseMatrix.h │ │ │ │ ├── BlockSparseMatrix.h │ │ │ │ ├── DynamicSparseMatrix.h │ │ │ │ ├── MarketIO.h │ │ │ │ ├── MatrixMarketIterator.h │ │ │ │ └── RandomSetter.h │ │ │ │ ├── SpecialFunctions │ │ │ │ ├── BesselFunctionsArrayAPI.h │ │ │ │ ├── BesselFunctionsBFloat16.h │ │ │ │ ├── BesselFunctionsFunctors.h │ │ │ │ ├── BesselFunctionsHalf.h │ │ │ │ ├── BesselFunctionsImpl.h │ │ │ │ ├── BesselFunctionsPacketMath.h │ │ │ │ ├── HipVectorCompatibility.h │ │ │ │ ├── SpecialFunctionsArrayAPI.h │ │ │ │ ├── SpecialFunctionsBFloat16.h │ │ │ │ ├── SpecialFunctionsFunctors.h │ │ │ │ ├── SpecialFunctionsHalf.h │ │ │ │ ├── SpecialFunctionsImpl.h │ │ │ │ ├── SpecialFunctionsPacketMath.h │ │ │ │ └── arch │ │ │ │ │ ├── AVX │ │ │ │ │ ├── BesselFunctions.h │ │ │ │ │ └── SpecialFunctions.h │ │ │ │ │ ├── AVX512 │ │ │ │ │ ├── BesselFunctions.h │ │ │ │ │ └── SpecialFunctions.h │ │ │ │ │ ├── GPU │ │ │ │ │ └── SpecialFunctions.h │ │ │ │ │ └── NEON │ │ │ │ │ ├── BesselFunctions.h │ │ │ │ │ └── SpecialFunctions.h │ │ │ │ └── Splines │ │ │ │ ├── Spline.h │ │ │ │ ├── SplineFitting.h │ │ │ │ └── SplineFwd.h │ │ │ ├── README.txt │ │ │ ├── bench │ │ │ └── bench_svd.cpp │ │ │ ├── doc │ │ │ ├── CMakeLists.txt │ │ │ ├── Overview.dox │ │ │ ├── SYCL.dox │ │ │ ├── eigendoxy_layout.xml.in │ │ │ ├── examples │ │ │ │ ├── BVH_Example.cpp │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── EulerAngles.cpp │ │ │ │ ├── FFT.cpp │ │ │ │ ├── MatrixExponential.cpp │ │ │ │ ├── MatrixFunction.cpp │ │ │ │ ├── MatrixLogarithm.cpp │ │ │ │ ├── MatrixPower.cpp │ │ │ │ ├── MatrixPower_optimal.cpp │ │ │ │ ├── MatrixSine.cpp │ │ │ │ ├── MatrixSinh.cpp │ │ │ │ ├── MatrixSquareRoot.cpp │ │ │ │ ├── PolynomialSolver1.cpp │ │ │ │ ├── PolynomialUtils1.cpp │ │ │ │ └── SYCL │ │ │ │ │ ├── CMakeLists.txt │ │ │ │ │ └── CwiseMul.cpp │ │ │ └── snippets │ │ │ │ └── CMakeLists.txt │ │ │ └── test │ │ │ ├── BVH.cpp │ │ │ ├── CMakeLists.txt │ │ │ ├── EulerAngles.cpp │ │ │ ├── FFT.cpp │ │ │ ├── FFTW.cpp │ │ │ ├── NonLinearOptimization.cpp │ │ │ ├── NumericalDiff.cpp │ │ │ ├── alignedvector3.cpp │ │ │ ├── autodiff.cpp │ │ │ ├── autodiff_scalar.cpp │ │ │ ├── bessel_functions.cpp │ │ │ ├── cxx11_eventcount.cpp │ │ │ ├── cxx11_maxsizevector.cpp │ │ │ ├── cxx11_meta.cpp │ │ │ ├── cxx11_non_blocking_thread_pool.cpp │ │ │ ├── cxx11_runqueue.cpp │ │ │ ├── cxx11_tensor_argmax.cpp │ │ │ ├── cxx11_tensor_argmax_gpu.cu │ │ │ ├── cxx11_tensor_argmax_sycl.cpp │ │ │ ├── cxx11_tensor_assign.cpp │ │ │ ├── cxx11_tensor_block_access.cpp │ │ │ ├── cxx11_tensor_block_eval.cpp │ │ │ ├── cxx11_tensor_block_io.cpp │ │ │ ├── cxx11_tensor_broadcast_sycl.cpp │ │ │ ├── cxx11_tensor_broadcasting.cpp │ │ │ ├── cxx11_tensor_builtins_sycl.cpp │ │ │ ├── cxx11_tensor_cast_float16_gpu.cu │ │ │ ├── cxx11_tensor_casts.cpp │ │ │ ├── cxx11_tensor_chipping.cpp │ │ │ ├── cxx11_tensor_chipping_sycl.cpp │ │ │ ├── cxx11_tensor_comparisons.cpp │ │ │ ├── cxx11_tensor_complex_cwise_ops_gpu.cu │ │ │ ├── cxx11_tensor_complex_gpu.cu │ │ │ ├── cxx11_tensor_concatenation.cpp │ │ │ ├── cxx11_tensor_concatenation_sycl.cpp │ │ │ ├── cxx11_tensor_const.cpp │ │ │ ├── cxx11_tensor_contract_gpu.cu │ │ │ ├── cxx11_tensor_contract_sycl.cpp │ │ │ ├── cxx11_tensor_contraction.cpp │ │ │ ├── cxx11_tensor_convolution.cpp │ │ │ ├── cxx11_tensor_convolution_sycl.cpp │ │ │ ├── cxx11_tensor_custom_index.cpp │ │ │ ├── cxx11_tensor_custom_op.cpp │ │ │ ├── cxx11_tensor_custom_op_sycl.cpp │ │ │ ├── cxx11_tensor_device.cu │ │ │ ├── cxx11_tensor_device_sycl.cpp │ │ │ ├── cxx11_tensor_dimension.cpp │ │ │ ├── cxx11_tensor_empty.cpp │ │ │ ├── cxx11_tensor_executor.cpp │ │ │ ├── cxx11_tensor_expr.cpp │ │ │ ├── cxx11_tensor_fft.cpp │ │ │ ├── cxx11_tensor_fixed_size.cpp │ │ │ ├── cxx11_tensor_forced_eval.cpp │ │ │ ├── cxx11_tensor_forced_eval_sycl.cpp │ │ │ ├── cxx11_tensor_generator.cpp │ │ │ ├── cxx11_tensor_generator_sycl.cpp │ │ │ ├── cxx11_tensor_gpu.cu │ │ │ ├── cxx11_tensor_ifft.cpp │ │ │ ├── cxx11_tensor_image_op_sycl.cpp │ │ │ ├── cxx11_tensor_image_patch.cpp │ │ │ ├── cxx11_tensor_image_patch_sycl.cpp │ │ │ ├── cxx11_tensor_index_list.cpp │ │ │ ├── cxx11_tensor_inflation.cpp │ │ │ ├── cxx11_tensor_inflation_sycl.cpp │ │ │ ├── cxx11_tensor_intdiv.cpp │ │ │ ├── cxx11_tensor_io.cpp │ │ │ ├── cxx11_tensor_layout_swap.cpp │ │ │ ├── cxx11_tensor_layout_swap_sycl.cpp │ │ │ ├── cxx11_tensor_lvalue.cpp │ │ │ ├── cxx11_tensor_map.cpp │ │ │ ├── cxx11_tensor_math.cpp │ │ │ ├── cxx11_tensor_math_sycl.cpp │ │ │ ├── cxx11_tensor_mixed_indices.cpp │ │ │ ├── cxx11_tensor_morphing.cpp │ │ │ ├── cxx11_tensor_morphing_sycl.cpp │ │ │ ├── cxx11_tensor_move.cpp │ │ │ ├── cxx11_tensor_notification.cpp │ │ │ ├── cxx11_tensor_of_complex.cpp │ │ │ ├── cxx11_tensor_of_const_values.cpp │ │ │ ├── cxx11_tensor_of_float16_gpu.cu │ │ │ ├── cxx11_tensor_of_strings.cpp │ │ │ ├── cxx11_tensor_padding.cpp │ │ │ ├── cxx11_tensor_padding_sycl.cpp │ │ │ ├── cxx11_tensor_patch.cpp │ │ │ ├── cxx11_tensor_patch_sycl.cpp │ │ │ ├── cxx11_tensor_random.cpp │ │ │ ├── cxx11_tensor_random_gpu.cu │ │ │ ├── cxx11_tensor_random_sycl.cpp │ │ │ ├── cxx11_tensor_reduction.cpp │ │ │ ├── cxx11_tensor_reduction_gpu.cu │ │ │ ├── cxx11_tensor_reduction_sycl.cpp │ │ │ ├── cxx11_tensor_ref.cpp │ │ │ ├── cxx11_tensor_reverse.cpp │ │ │ ├── cxx11_tensor_reverse_sycl.cpp │ │ │ ├── cxx11_tensor_roundings.cpp │ │ │ ├── cxx11_tensor_scan.cpp │ │ │ ├── cxx11_tensor_scan_gpu.cu │ │ │ ├── cxx11_tensor_scan_sycl.cpp │ │ │ ├── cxx11_tensor_shuffling.cpp │ │ │ ├── cxx11_tensor_shuffling_sycl.cpp │ │ │ ├── cxx11_tensor_simple.cpp │ │ │ ├── cxx11_tensor_striding.cpp │ │ │ ├── cxx11_tensor_striding_sycl.cpp │ │ │ ├── cxx11_tensor_sugar.cpp │ │ │ ├── cxx11_tensor_sycl.cpp │ │ │ ├── cxx11_tensor_symmetry.cpp │ │ │ ├── cxx11_tensor_thread_local.cpp │ │ │ ├── cxx11_tensor_thread_pool.cpp │ │ │ ├── cxx11_tensor_trace.cpp │ │ │ ├── cxx11_tensor_uint128.cpp │ │ │ ├── cxx11_tensor_volume_patch.cpp │ │ │ ├── cxx11_tensor_volume_patch_sycl.cpp │ │ │ ├── dgmres.cpp │ │ │ ├── forward_adolc.cpp │ │ │ ├── gmres.cpp │ │ │ ├── idrs.cpp │ │ │ ├── kronecker_product.cpp │ │ │ ├── levenberg_marquardt.cpp │ │ │ ├── matrix_exponential.cpp │ │ │ ├── matrix_function.cpp │ │ │ ├── matrix_functions.h │ │ │ ├── matrix_power.cpp │ │ │ ├── matrix_square_root.cpp │ │ │ ├── minres.cpp │ │ │ ├── mpreal_support.cpp │ │ │ ├── openglsupport.cpp │ │ │ ├── polynomialsolver.cpp │ │ │ ├── polynomialutils.cpp │ │ │ ├── sparse_extra.cpp │ │ │ ├── special_functions.cpp │ │ │ ├── special_packetmath.cpp │ │ │ └── splines.cpp │ └── template.cpp ├── man │ ├── FreeADFun.Rd │ ├── GK.Rd │ ├── MakeADFun.Rd │ ├── Rinterface.Rd │ ├── SR.Rd │ ├── TMB.Version.Rd │ ├── as.list.sdreport.Rd │ ├── benchmark.Rd │ ├── checkConsistency.Rd │ ├── compile.Rd │ ├── config.Rd │ ├── confint.tmbprofile.Rd │ ├── dynlib.Rd │ ├── gdbsource.Rd │ ├── newton.Rd │ ├── newtonOption.Rd │ ├── normalize.Rd │ ├── oneStepPredict.Rd │ ├── openmp.Rd │ ├── plot.tmbprofile.Rd │ ├── precompile.Rd │ ├── print.checkConsistency.Rd │ ├── print.sdreport.Rd │ ├── runExample.Rd │ ├── runSymbolicAnalysis.Rd │ ├── sdreport.Rd │ ├── summary.checkConsistency.Rd │ ├── summary.sdreport.Rd │ ├── template.Rd │ ├── tmbprofile.Rd │ └── tmbroot.Rd └── src │ ├── Makevars │ ├── external_metis.c │ ├── init.c │ ├── local_stubs.c │ ├── solve_subset.c │ └── utils.c ├── TODO.md ├── bin ├── abi_hash.sh ├── abi_table.sh ├── benchmark.sh ├── benchmark_compare.sh ├── deploy.md ├── deploy.sh ├── deploy_key.enc ├── find_tmb_junk.sh ├── install_and_check.sh ├── install_dependencies.sh ├── macro_cleanup.sh ├── makeSymlink.sh ├── patch │ ├── CTOR-workarounds.patch │ ├── CppAD-jacobian-prefer-reverse-mode-over-forward-mode.patch │ └── Parallel-checkpoint-still-needed.patch ├── patch_cppad.sh ├── run_full_example_suite.sh ├── run_more_checks.sh ├── update_cppad.sh └── version.sh ├── dox ├── 00-BookConfig.Rmd ├── 01-Introduction.Rmd ├── 02-ModelObject.Rmd ├── 03-Sparsity.Rmd ├── 04-CovStruct.Rmd ├── 05-Simulation.Rmd ├── 06-Validation.Rmd ├── 07-AtomicFunctions.Rmd ├── 08-Parallelization.Rmd ├── 09-Appendix.Rmd ├── Doxyfile ├── Makefile ├── README.md ├── figure │ ├── TMB_components.pdf │ └── TMB_components.png ├── layout │ ├── customdoxygen.css │ ├── doxy-boot.js │ ├── footer.html │ ├── header.html │ ├── inject_links.R │ ├── krantz.cls │ └── utils.R ├── mainpage.Rmd └── references.bib ├── emacs ├── LICENSE ├── NEWS └── tmb.el ├── gdb ├── .gdbinit └── README.md ├── tmb_examples ├── Makefile ├── README.md ├── TMBad │ ├── README.md │ ├── interpol.R │ ├── interpol.cpp │ ├── sam.R │ ├── sam.cpp │ ├── sam.expected.RData │ ├── sam_data.R │ ├── solver.R │ ├── solver.cpp │ ├── spa_gauss.R │ ├── spa_gauss.cpp │ ├── spatial.R │ ├── spatial.cpp │ ├── spatial.expected.RData │ ├── spatial_data.R │ ├── spde_epsilon.R │ ├── spde_epsilon.cpp │ ├── spde_mesh.RData │ ├── thetalog.R │ ├── thetalog.cpp │ ├── thetalog.dat │ └── thetalog.expected.RData ├── adaptive_integration.R ├── adaptive_integration.cpp ├── adaptive_integration.expected.RData ├── ar1_4D.R ├── ar1_4D.cpp ├── ar1_4D.expected.RData ├── compois.R ├── compois.cpp ├── compois.expected.RData ├── fft.R ├── fft.cpp ├── fft.expected.RData ├── hmm.R ├── hmm.cpp ├── hmm.expected.RData ├── hmm_filter.hpp ├── laplace.R ├── laplace.cpp ├── laplace.expected.RData ├── linreg.R ├── linreg.cpp ├── linreg.expected.RData ├── linreg_parallel.R ├── linreg_parallel.cpp ├── linreg_parallel.expected.RData ├── longlinreg.R ├── longlinreg.cpp ├── longlinreg.expected.RData ├── lr_test.R ├── lr_test.cpp ├── matern.R ├── matern.cpp ├── matern.expected.RData ├── mvrw.R ├── mvrw.cpp ├── mvrw.expected.RData ├── mvrw_sparse.R ├── mvrw_sparse.cpp ├── mvrw_sparse.expected.RData ├── nmix.R ├── nmix.cpp ├── nmix.dat ├── nmix.expected.RData ├── orange_big.R ├── orange_big.cpp ├── orange_big.expected.RData ├── orange_data.R ├── register_atomic.R ├── register_atomic.cpp ├── register_atomic.expected.RData ├── register_atomic_parallel.R ├── register_atomic_parallel.cpp ├── sam.R ├── sam.cpp ├── sam.expected.RData ├── sam_data.R ├── sde_linear.R ├── sde_linear.cpp ├── sde_linear.expected.RData ├── sdv_multi.R ├── sdv_multi.cpp ├── sdv_multi.expected.RData ├── sdv_multi_compact.R ├── sdv_multi_compact.cpp ├── sdv_multi_compact.expected.RData ├── sdv_multi_data.R ├── socatt.R ├── socatt.cpp ├── socatt.dat ├── socatt.expected.RData ├── spatial.R ├── spatial.cpp ├── spatial.expected.RData ├── spatial_data.R ├── spde.R ├── spde.cpp ├── spde.expected.RData ├── spde_aniso.R ├── spde_aniso.cpp ├── spde_aniso.expected.RData ├── spde_aniso_speedup.R ├── spde_aniso_speedup.cpp ├── spde_mesh.R ├── spde_mesh.RData ├── thetalog.R ├── thetalog.cpp ├── thetalog.dat ├── thetalog.expected.RData ├── tools │ ├── logpid.R │ ├── profiler.R │ ├── readdat.R │ └── unittest.R ├── transform.R ├── transform.cpp ├── transform.expected.RData ├── transform2.R ├── transform2.cpp ├── transform2.expected.RData ├── transform_parallel.R ├── transform_parallel.cpp ├── tweedie.R ├── tweedie.cpp ├── tweedie.expected.RData ├── tweedie_data.R └── validation │ ├── MVRandomWalkValidation.R │ ├── MVRandomWalkValidation.cpp │ ├── MVRandomWalkValidation.expected.RData │ ├── MVRandomWalkValidation_data.R │ ├── randomwalkvalidation.R │ ├── randomwalkvalidation.cpp │ ├── randomwalkvalidation.expected.RData │ ├── rickervalidation.R │ ├── rickervalidation.cpp │ └── rickervalidation.expected.RData └── tmb_syntax ├── Makefile ├── check_autodiff.R ├── check_autodiff.cpp ├── check_derivatives.R ├── check_distributions.R ├── check_simulations.R ├── check_simulations.cpp ├── compilation_units ├── Makefile ├── Makevars ├── README.md ├── adaptive_integration.cpp ├── distrib.cpp └── distrib.h ├── data_update.R ├── data_update.cpp ├── matrix_arrays.R ├── matrix_arrays.cpp ├── multivariate_distributions.R ├── 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