├── .gitattributes ├── .github ├── FUNDING.yml ├── ISSUE_TEMPLATE │ ├── bug_report.md │ └── feature_request.md ├── stale.yml └── workflows │ └── main.yml ├── .gitignore ├── CONTRIBUTING.md ├── LICENSE ├── MANIFEST.in ├── Makefile ├── README.md ├── data ├── example_grid.nii.gz ├── masks │ ├── radiopaedia_10_85902_1.nii.gz │ ├── radiopaedia_10_85902_3.nii.gz │ ├── radiopaedia_14_85914_0.nii.gz │ ├── radiopaedia_27_86410_0.nii.gz │ └── radiopaedia_29_86490_1.nii.gz ├── radiopaedia_cases.csv └── series │ ├── radiopaedia_10_85902_1.nii.gz │ ├── radiopaedia_10_85902_3.nii.gz │ ├── radiopaedia_14_85914_0.nii.gz │ ├── radiopaedia_27_86410_0.nii.gz │ └── radiopaedia_29_86490_1.nii.gz ├── dev_nbs └── 99_widgets.cam.ipynb ├── docker-compose.yml ├── docs ├── .gitignore ├── Gemfile ├── Gemfile.lock ├── _config.yml ├── _data │ ├── sidebars │ │ └── home_sidebar.yml │ └── topnav.yml ├── assets │ ├── css │ │ ├── bootstrap.min.css │ │ ├── boxshadowproperties.css │ │ ├── customstyles.css │ │ ├── font-awesome.min.css │ │ ├── fonts │ │ │ ├── FontAwesome.otf │ │ │ ├── fontawesome-webfont.eot │ │ │ ├── fontawesome-webfont.svg │ │ │ ├── fontawesome-webfont.ttf │ │ │ ├── fontawesome-webfont.woff │ │ │ └── fontawesome-webfont.woff2 │ │ ├── modern-business.css │ │ ├── printstyles.css │ │ ├── syntax.css │ │ ├── theme-blue.css │ │ └── theme-green.css │ ├── fonts │ │ ├── FontAwesome.otf │ │ ├── fontawesome-webfont.eot │ │ ├── fontawesome-webfont.svg │ │ ├── fontawesome-webfont.ttf │ │ ├── fontawesome-webfont.woff │ │ ├── glyphicons-halflings-regular.eot │ │ ├── glyphicons-halflings-regular.svg │ │ ├── glyphicons-halflings-regular.ttf │ │ ├── glyphicons-halflings-regular.woff │ │ └── glyphicons-halflings-regular.woff2 │ ├── images │ │ ├── colab.svg │ │ ├── company_logo.png │ │ ├── company_logo_big.png │ │ ├── favicon.ico │ │ └── workflowarrow.png │ └── js │ │ ├── customscripts.js │ │ ├── jekyll-search.js │ │ ├── jquery.ba-throttle-debounce.min.js │ │ ├── jquery.navgoco.min.js │ │ ├── jquery.shuffle.min.js │ │ └── toc.js ├── basics.html ├── callback.html ├── dataloaders.html ├── feed.xml ├── images │ ├── 4d-cnn.png │ ├── colab.svg │ ├── company_logo.png │ ├── company_logo_big.png │ ├── favivon.ico │ ├── logo.png │ ├── output_11_2.png │ ├── output_12_2.png │ ├── output_6_2.png │ ├── output_9_2.png │ └── workflowarrow.png ├── index.html ├── layers.html ├── learner.html ├── model.efficientnet.html ├── models.alexnet.html ├── models.deeplabv3.html ├── models.losses.html ├── models.resnet.html ├── models.unet.html ├── preprocessing.html ├── search-template.txt ├── sidebar.json ├── sitemap.xml ├── tooltips.json ├── transforms.html └── widgets.viewer.html ├── examples ├── 3d_classification.md ├── 3d_segmentation.md └── imgs │ ├── cm_3d_cl.png │ ├── ct_sample_cases_seg.png │ ├── ct_sample_radio_seg.png │ ├── plot_loss_112_3d_cl.png │ ├── plot_loss_224_3d_cl.png │ ├── plot_lr_find_seg.png │ ├── sample_preds_seg.png │ └── sample_targs_seg.png ├── faimed3d ├── __init__.py ├── _nbdev.py ├── all.py ├── augment.py ├── basics.py ├── callback.py ├── data.py ├── layers.py ├── learner.py ├── models │ ├── __init__.py │ ├── alexnet.py │ ├── deeplab.py │ ├── efficientnet.py │ ├── losses.py │ ├── resnet.py │ └── unet.py ├── preprocess.py └── widgets │ ├── __init__.py │ └── viewer.py ├── img ├── 4d-cnn.png └── prostate_segmentation.PNG ├── index.ipynb ├── nbs ├── .gitattributes ├── .last_checked ├── 01_basics.ipynb ├── 02_preprocessing.ipynb ├── 03_transforms.ipynb ├── 04_dataloaders.ipynb ├── 05_layers.ipynb ├── 06_learner.ipynb ├── 06a_models.alexnet.ipynb ├── 06b_models.resnet.ipynb ├── 06c_model.efficientnet.ipynb ├── 06d_models.unet.ipynb ├── 06e_models.deeplabv3.ipynb ├── 06f_models.losses.ipynb ├── 07_callback.ipynb ├── 08_widgets.viewer.ipynb ├── faimed3d └── index.ipynb ├── settings.ini └── setup.py /.gitattributes: -------------------------------------------------------------------------------- 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