├── ReadMe.md └── slides └── slides_MLInf_7_25_16_CH.pdf /ReadMe.md: -------------------------------------------------------------------------------- 1 | # Links to slides from JSM 2016 2 | 3 | Links to slides to talks at the 2016 4 | [Joint Statistical Meetings](https://www.amstat.org/meetings/jsm/2016/) 5 | in Chicago, Illinois. 6 | 7 | Pull requests welcome! Or add an issue or email 8 | [Karl Broman](http://kbroman.org). 9 | 10 | ## Sunday, 31 July 11 | 12 | ### 2:00pm - 3:50pm 13 | 14 | #### [6 Open Source Statistical Software for Data Science](https://www.amstat.org/meetings/jsm/2016/onlineprogram/ActivityDetails.cfm?SessionID=212387) 15 | 16 | - Skipper Seabold, [@jseabold](https://twitter.com/jseabold), 17 | [Having an impact as a modern statistician: Lessons from Software Engineering](https://speakerdeck.com/jseabold/having-an-impact-as-a-modern-statistician) 18 | 19 | - Jake VanderPlas, [@jakevdp](https://twitter.com/jakevdp), 20 | [Python's Data Science Stack](https://speakerdeck.com/jakevdp/pythons-data-science-stack-jsm-2016) 21 | 22 | - [Dirk Eddelbuettel](http://dirk.eddelbuettel.com/), [@eddelbuettel](https://twitter.com/eddelbuettel), 23 | [If You Can't Beat 'Em...](http://dirk.eddelbuettel.com/papers/jsm2016_rcpp_talk.pdf) 24 | 25 | - Mike Kane, [@kaneplusplus](https://twitter.com/kaneplusplus), 26 | [Grammars and Structures for Computing with Data](http://slides.com/michaelkane/deck-17#/) 27 | 28 | #### [7 Statistical Learning of Health Care Systems](https://www.amstat.org/meetings/jsm/2016/onlineprogram/ActivityDetails.cfm?SessionID=212491) 29 | 30 | - Becky McNeil, [@biostatbecky](https://twitter.com/biostatbecky), 31 | [Two case studies of statistical approaches that simplify the VHA learning health care system](https://github.com/bmcneil/Presentations) 32 | 33 | #### [26 Distinguishing Between Statistics Education for Undergraduate and Graduate Nonstatistics Major Students](https://www.amstat.org/meetings/jsm/2016/onlineprogram/ActivityDetails.cfm?SessionID=212717) 34 | 35 | - [Matt Hayat](http://publichealth.gsu.edu/profile/matt-hayat/), [Literature](http://bit.ly/MJHjsm2016) 36 | 37 | - [MyoungJin Kim](http://nursing.illinoisstate.edu/faculty-staff/profile.php?ulid=mkim2), [Technology](http://bit.ly/MJKjsm2016) 38 | 39 | - [Todd Schwartz](http://sph.unc.edu/adv_profile/todd-schwartz-drph/), [Datasets](http://bit.ly/TSjsm2016v2) 40 | 41 | - [Mike Jiroutek](http://www.campbell.edu/cphs/faculty/faculty-members/michael-r.-jiroutek), [Pedagogy](http://bit.ly/MRJjsm2016) 42 | 43 | #### [33 Efficient Methods for Structured Large Genomics Data](https://www.amstat.org/meetings/jsm/2016/onlineprogram/ActivityDetails.cfm?SessionID=212892) 44 | 45 | - Xiang Zhu, [@zhumaimai](https://twitter.com/zhumaimai), 46 | [Bayesian large-scale multiple regression with summary statistics from genome-wide association studies](http://www.stat.uchicago.edu/~xiangzhu/JSM_20160731.pdf) 47 | 48 | ### 4:00pm - 5:50pm 49 | 50 | #### [47 Making the Most of R Tools](https://www.amstat.org/meetings/jsm/2016/onlineprogram/ActivityDetails.cfm?SessionID=212343) 51 | 52 | - Nicholas Horton, [@askdrstats](https://twitter.com/askdrstats), 53 | [Thinking with Data using R and RStudio: powerful idioms for analysts](https://github.com/Amherst-Statistics/JSM2016-thinkwithR) 54 | 55 | #### [51 Media and Statistics](https://www.amstat.org/meetings/jsm/2016/onlineprogram/ActivityDetails.cfm?SessionID=212366) 56 | 57 | - Julie Rehmeyer, [@julierehmeyer](https://twitter.com/julierehmeyer), 58 | [Bad statistics, bad reporting, bad impact on patients: The story of the PACE trial](http://www.slideshare.net/JulieRehmeyer/bad-statistics-bad-reporting-bad-impact-on-patients-the-story-of-the-pace-trial) 59 | 60 | #### [54 Recent Advances in Information Visualization](https://www.amstat.org/meetings/jsm/2016/onlineprogram/ActivityDetails.cfm?SessionID=212554) 61 | 62 | - [Zan Armstrong](http://blog.zanarmstrong.com/about/), [@zanstrong](https://twitter.com/zanstrong), 63 | [Visualizing Statistics "Mix Effects" and Simpson's Paradox](https://docs.google.com/presentation/d/1TC9986iqrAe4cBH77kP-2sAf_i-W0jnxM9ZnGWq2S0w/edit#slide=id.p) 64 | 65 | 66 | #### [69 Novel Methods in Causal and Mediation Analysis](https://www.amstat.org/meetings/jsm/2016/onlineprogram/ActivityDetails.cfm?SessionID=212850) 67 | 68 | - Julian Wolfson, [@DrJWolfson](https://twitter.com/drjwolfson), 69 | [Treatment Effect Heterogeneity Trees](https://drive.google.com/uc?export=download&id=0B7tyIRgneHdbVFAtd3UxeldlV00) 70 | 71 | #### [74 Estimation and Learning in Graphical Models](https://www.amstat.org/meetings/jsm/2016/onlineprogram/ActivityDetails.cfm?SessionID=212918) 72 | 73 | - Andee Kaplan, [@andeekaplan](https://twitter.com/andeekaplan), 74 | [An exposition on the propriety of restricted Boltzmann machines](http://andeekaplan.com/rbm/presentations/jsm2016/) 75 | 76 | #### [78 For the Love of the Game: Applications of Statistics in Sports](https://www.amstat.org/meetings/jsm/2016/onlineprogram/ActivityDetails.cfm?SessionID=212986) 77 | 78 | - Brandon LeBeau, [@blebeau11](https://twitter.com/@blebeau11), 79 | [Estimating NCAA Football Coaches’ Abilities An Application of Item Response Theory](http://educate-r.org/2016/07/31/jsm2016.html) 80 | 81 | - Gregory Matthews, [@StatsInTheWild](https://twitter.com/StatsInTheWild), 82 | [An Examination of Statistical Disclosure Issues Related to Publication of Aggregate Statistics in the Presence of a Known Subset of the Data Set Using Baseball Hall of Fame Ballots](https://dl.dropboxusercontent.com/u/35094868/SlidesForTalk.pdf) 83 | 84 | 85 | --- 86 | 87 | ## Monday, 1 August 88 | 89 | ### 8:30am - 10:20am 90 | 91 | #### [7 Applied Data Visualization in Industry and Journalism](https://www.amstat.org/meetings/jsm/2016/onlineprogram/ActivityDetails.cfm?SessionID=212543) 92 | 93 | - [Jeff Leek](http://jtleek.com), [@jtleek](https://twitter.com/jtleek), 94 | [Data Science as a Science](http://www.slideshare.net/jtleek/data-science-as-a-science) 95 | 96 | #### [135 Advanced Methods for Statistics in Sports](https://www.amstat.org/meetings/jsm/2016/onlineprogram/ActivityDetails.cfm?SessionID=212985) 97 | 98 | - Scott Powers, [@saberpowers](https://twitter.com/saberpowers), 99 | [Nuclear Penalized Multinomial Regression for Predicting At-Bat Outcomes in Baseball](https://github.com/saberpowers/npmr/blob/master/slides/jsm2016.pdf) 100 | 101 | - Sameer Deshpande, [A Bayesian Hierarchical Model of Pitch Framing in Major League Baseball](http://stat.wharton.upenn.edu/~dsameer/pitchFraming/deshpande_jsm2016.pdf) 102 | 103 | ### 10:30am - 12:20pm 104 | 105 | #### [142 The Extraordinary Impacts of Statistics in Genomics and Genetics](https://www.amstat.org/meetings/jsm/2016/onlineprogram/ActivityDetails.cfm?SessionID=212335) 106 | 107 | - [John Storey](http://genomine.org/), [@storeylab](https://github.com/storeylab), 108 | [Latent Variable Methods for the Analysis of Genomic Data](http://genomine.org/talks/jsm_2016.pdf) 109 | 110 | - [Rafael Irizarry](http://rafalab.dfci.harvard.edu/), [@rafalab](https://github.com/rafalab), 111 | [Overcoming bias and batch effects in RNA-seq data](http://rafalab.github.io/talks/JSM-2016.pdf) 112 | \[[related paper on bioRxiv](http://www.biorxiv.org/content/early/2015/08/28/025767)\] 113 | 114 | #### [170 SPEED: Statistics for Education and Social Sciences Research](http://ww2.amstat.org/meetings/jsm/2016/onlineprogram/ActivityDetails.cfm?SessionID=213158) 115 | 116 | - [Amelia McNamara](http://www.science.smith.edu/~amcnamara/), [@AmeliaMN](https://twitter.com/AmeliaMN), [ Pushing the Boundary Between Tools for Learning and for Doing Statistics](http://www.science.smith.edu/~amcnamara/JSM2016_PushingTheBoundary.pdf) 117 | 118 | ### 2:00pm - 3:50pm 119 | 120 | #### [228 The Extraordinary Power of Statistical Collaboration](https://www.amstat.org/meetings/jsm/2016/onlineprogram/ActivityDetails.cfm?SessionID=212605) 121 | 122 | - [Eric Vance](http://ervance.com), [@ervance](https://twitter.com/ervance), 123 | [The Extraordinary Potential of Statistical Collaboration Laboratories](https://prezi.com/dpiwuz7pep45/2016jsmeposcl/) 124 | 125 | #### [247 Toward Better Communication of Information with Statistical Graphics](https://www.amstat.org/meetings/jsm/2016/onlineprogram/ActivityDetails.cfm?SessionID=212912) 126 | 127 | - [Susan VanderPlas](http://srvanderplas.github.io), [@srvanderplas](https://twitter.com/srvanderplas), 128 | [Clusters Beat Trend!? Testing Feature Hierarchy in Statistical Graphics](https://srvanderplas.github.io/Presentations/JSM2016/HierarchyOfVisualFeatures.html#/) 129 | 130 | #### [257 Motivating and Teaching Advanced Biostatistical Topics](https://www.amstat.org/meetings/jsm/2016/onlineprogram/ActivityDetails.cfm?SessionID=213006) 131 | 132 | - Pierre-Jérôme Bergeron, 133 | [Valar Morghulis: A Survival Analysis of a Song of Ice and Fire](https://dl.dropboxusercontent.com/u/38003000/bergeronJSM2016.pdf) 134 | 135 | --- 136 | 137 | ## Tuesday, 2 August 138 | 139 | ### 8:30am - 10:20am 140 | 141 | #### [288 Economic and Business Applications in High-Dimensional Big Data Contexts](https://www.amstat.org/meetings/jsm/2016/onlineprogram/ActivityDetails.cfm?SessionID=212479) 142 | 143 | - [Christian Hansen](http://www.chicagobooth.edu/faculty/directory/h/christian-b-hansen), [Double Machine Learning for Treatment and Causal Parameters](https://github.com/kbroman/JSM2016slides/blob/master/slides/slides_MLInf_7_25_16_CH.pdf)[[arxiv](https://arxiv.org/abs/1608.00060v1)] 144 | 145 | ### 10:30am - 12:20pm 146 | 147 | #### [326 Controversies: Past, Present, and Future -- Statistical Issues in Reproducibility](https://www.amstat.org/meetings/jsm/2016/onlineprogram/ActivityDetails.cfm?SessionID=212307) 148 | 149 | - Fernando Martel Garcia, [Replication and the Manufacture of Scientific Inferences: A Formal Approach](https://dl.dropboxusercontent.com/u/15842577/presentation_amstat_Aug_2016b.pdf) 150 | 151 | #### [332 Doing More with Data in and Outside the Undergraduate Classroom](https://www.amstat.org/meetings/jsm/2016/onlineprogram/ActivityDetails.cfm?SessionID=212444) 152 | 153 | - [Colin Rundel](http://www2.stat.duke.edu/~cr173/), [@rundel](https://twitter.com/rundel), 154 | [Statistical computing as an introduction to data science](https://github.com/rundel/Presentations/tree/master/JSM%202016) 155 | 156 | #### [352 SPEED: Advances in Biometrics](https://www.amstat.org/meetings/jsm/2016/onlineprogram/ActivityDetails.cfm?SessionID=213147) 157 | 158 | - [Jean V. Adams](https://profile.usgs.gov/jvadams), [@JeanVAdams](https://twitter.com/JeanVAdams), 159 | [Fish Cliques: Evidence of Social Groups from Sparse Observations in Time and Space?](https://speakerdeck.com/jvadams/fish-cliques-evidence-of-social-groups-from-sparse-observations-in-time-and-space) 160 | 161 | ### 2:00pm - 3:50pm 162 | 163 | #### [407 Interactive Visualizations and Web Applications for Analytics](https://www.amstat.org/meetings/jsm/2016/onlineprogram/ActivityDetails.cfm?SessionID=212551) 164 | 165 | - [Carson Sievert](http://cpsievert.github.io/), [@cpsievert](https://twitter.com/cpsievert), 166 | [Interactive and Dynamic Web-Based Graphics for Data Analysis](http://bit.ly/JSM_16) 167 | 168 | - [Yihui Xie](http://yihui.name/), [@xieyihui](https://twitter.com/xieyihui), 169 | [HTML Widgets: Interactive Visualizations from R Made Easy!](https://dl.dropboxusercontent.com/u/15335397/slides/2016-htmlwidgets-JSM-Yihui-Xie.html) 170 | 171 | #### [418 Biometrics Section Student Paper Award Session 2](https://www.amstat.org/meetings/jsm/2016/onlineprogram/ActivityDetails.cfm?sessionid=212749) 172 | 173 | - [Keegan Korthauer](http://bcb.dfci.harvard.edu/~keegan/index.html), [@keegsdur](https://twitter.com/keegsdur), [scDD: A Statistical Approach for Identifying Differential Distributions in Single-Cell RNA-Seq Experiments](http://bcb.dfci.harvard.edu/~keegan/talks/JSM_2016_Korthauer_Session_418.pdf) 174 | 175 | #### [451 SPEED: Advances in Biometrics, Part 2B](https://www.amstat.org/meetings/jsm/2016/onlineprogram/ActivityDetails.cfm?SessionID=213218) 176 | 177 | - [Jean V. Adams](https://profile.usgs.gov/jvadams), [@JeanVAdams](https://twitter.com/JeanVAdams), 178 | [Fish Cliques: Evidence of Social Groups from Sparse Observations in Time and Space?](https://speakerdeck.com/jvadams/fish-cliques-evidence-of-social-groups-from-sparse-observations-in-time-and-space-1) 179 | 180 | --- 181 | 182 | ## Wednesday, 3 August 183 | 184 | ### 8:30am - 10:20am 185 | 186 | #### [465 Data Science for Health Policy: A Broad Tent ](https://www.amstat.org/meetings/jsm/2016/onlineprogram/ActivityDetails.cfm?SessionID=212330) 187 | 188 | - [Jenna Krall](http://jennakrall.com), [@kralljr](https://twitter.com/kralljr), [Identifying the Most Harmful Sources of Ambient Air Pollution to Better Protect Public Health](http://jennakrall.com/krall-jsm-2016.pdf) 189 | 190 | #### [475 Reproducibility in Statistics and Data Science ](https://www.amstat.org/meetings/jsm/2016/onlineprogram/ActivityDetails.cfm?SessionID=212538) 191 | 192 | - [Jenny Bryan](http://stat545.com), [@jennybryan](https://twitter.com/jennybryan), 193 | [Reproducibility for All and Our Love/Hate Relationship with Spreadsheets](https://github.com/jennybc/2016-06_spreadsheets#readme) 194 | 195 | - [Karl Broman](http://kbroman.org), 196 | [Steps Toward Reproducible Research](http://bit.ly/jsm2016) 197 | 198 | - [Karthik Ram](http://karthik.io/), 199 | [@_inundata](https://twitter.com/_inundata), 200 | [Enough with trickle down reproducibility: scientists, open this gate! scientists, tear down this wall!](http://inundata.org/talks/jsm2016) 10.5281/zenodo.59737 201 | 202 | - [Mine Çetinkaya-Rundel](http://www2.stat.duke.edu/~mc301/), 203 | [@minebocek](https://twitter.com/minebocek), 204 | [Integrating reproducibility into the undergraduate statistics curriculum](https://github.com/mine-cetinkaya-rundel/2016-08-03-reproducible-undergrad-stats) 205 | 206 | - [Yihui Xie](http://yihui.name/), [@xieyihui](https://twitter.com/xieyihui), 207 | [Reproducibility in Statistics and Data Science (Discussion)](https://dl.dropboxusercontent.com/u/15335397/slides/2016-repro-JSM-Yihui-Xie.html#(1)) 208 | 209 | #### [486 Estimating the Properties of Physical Time Series by Leveraging the Power of Spectral Analysis](https://www.amstat.org/meetings/jsm/2016/onlineprogram/ActivityDetails.cfm?SessionID=212827) 210 | 211 | - [Wesley S. Burr](http://www.wesleyburr.com), [@wsburr](https://twitter.com/wsburr), [Phase as Lag: Synthetic Lag Models for Risk Estimation in Environmental Epidemiology](https://wesleyburr.github.io/Talk_JSM2016/) 212 | 213 | - [Josh Pohlkamp-Hartt](https://www.linkedin.com/in/jpohlkamphartt), [Extraction of Atrial Signals From Electrocardiograms](https://github.com/wesleyburr/Talk_JSM2016/blob/master/JSM%202016%20JPohlkampHartt.pdf) 214 | 215 | #### [492 SPEED: Advances in Survey Research Methodology](https://www.amstat.org/meetings/jsm/2016/onlineprogram/ActivityDetails.cfm?SessionID=213155) 216 | 217 | - Stanislav Kolenikov, [@StatStas](https://twitter.com/StatStas), 218 | [Sampling with Minimal Strata Sample Size Requirements](https://github.com/skolenik/jsm2016slides) 219 | 220 | #### [499 Statistical Learning Approaches to Biological Inference Problems](https://www.amstat.org/meetings/jsm/2016/onlineprogram/ActivityDetails.cfm?SessionID=212935) 221 | 222 | - [Neal Grantham](http://nsgrantham.github.io), [@nsgrantham](https://twitter.com/nsgrantham), [Deep Spatial Learning for Forensic Geolocation with Microbiome Data](http://nsgrantham.github.io/documents/jsm-2016.pdf) 223 | 224 | ### 10:30am - 12:20pm 225 | 226 | #### [520 Machine Learning in Econometrics](https://www.amstat.org/meetings/jsm/2016/onlineprogram/ActivityDetails.cfm?SessionID=212663) 227 | 228 | - [Qingyuan Zhao](http://web.stanford.edu/~qyzhao/) [Causal Interpretations of Black-Box Models](http://web.stanford.edu/~qyzhao/papers/pdp_slides.pdf) 229 | 230 | #### [526 The 2016 Statistical Computing and Graphics Award Honors William S. Cleveland](https://www.amstat.org/meetings/jsm/2016/onlineprogram/ActivityDetails.cfm?SessionID=212769) 231 | 232 | - [Dianne Cook](http://dicook.github.io/), [@visnut](https://twitter.com/visnut), Modern Crowd-Sourcing Validates Cleveland's 1984 Hierarchy of Graphical Elements \[[survey](http://bit.ly/JSM-vis16) | [results](http://visiphilia.org/2016/08/03/CM-hierarchy)\] 233 | 234 | - [Luke Tierney](http://homepage.divms.uiowa.edu/~luke/), 235 | [Some reflections on dynamic graphics for data exploration](http://homepage.divms.uiowa.edu/~luke/talks/jsm2016.pdf) 236 | 237 | - [Video Library](http://stat-graphics.org/movies/), ASA Sections on Statistical Computing and 238 | Statistical Graphics 239 | 240 | ### 2:00pm - 3:50pm 241 | 242 | #### [593 Batch Effects in Genomics Data](https://www.amstat.org/meetings/jsm/2016/onlineprogram/ActivityDetails.cfm?SessionID=212439) 243 | 244 | - David Risso, [@drisso1893](https://twitter.com/drisso1893), 245 | [Design and normalization of single-cell RNA-seq](http://rpubs.com/daviderisso/jsm2016) 246 | 247 | #### [600 When the Plot Is Not the End: Advances in Computing and Reasoning on Data Visualizations](https://www.amstat.org/meetings/jsm/2016/onlineprogram/ActivityDetails.cfm?SessionID=212826) 248 | 249 | - Barret Schloerke, [@schloerke](https://twitter.com/schloerke), 250 | [Cognostics: Metrics Enabling Detailed Interactive Visualization of Big Data](https://www.odrive.com/s/e2519606-0fc9-49ef-a058-5aadc88bebf5-57a2530e) 251 | 252 | --- 253 | 254 | ## Thursday, 4 August 255 | 256 | ### 8:30am - 10:20am 257 | 258 | #### [632 Julia for Modern Statistical Computing](https://www.amstat.org/meetings/jsm/2016/onlineprogram/ActivityDetails.cfm?SessionID=212487) 259 | 260 | - [Josh Day](https://joshday.github.io), [OnlineStats.jl for Streaming and Big Data](https://github.com/joshday/OnlineStats_JSM2016) 261 | 262 | #### [652 Big Data and Data Science Education](http://ww2.amstat.org/meetings/jsm/2016/onlineprogram/ActivityDetails.cfm?SessionID=212899) 263 | 264 | - [Robin Lock](http://it.stlawu.edu/~rlock/), [DataSurfing on the World Wide Web: Part 2](http://myslu.stlawu.edu/~rlock/data2016.html) ([Part 1, from JSM 1996](http://it.stlawu.edu/~rlock/data96/)) 265 | -------------------------------------------------------------------------------- /slides/slides_MLInf_7_25_16_CH.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kbroman/JSM2016slides/14d65ece795201c91ad0726ff7c2208978d427a2/slides/slides_MLInf_7_25_16_CH.pdf --------------------------------------------------------------------------------