├── .gitignore ├── README.md ├── benchmark_result.CMRG.png ├── benchmark_result.GIAB.png ├── convert_severus.py ├── environment.yml ├── fetch_data.sh ├── nextflow.config ├── ont_results.md ├── pacbio_results.md ├── pipeline.nf └── plot_benchmark.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kcleal/SV_Benchmark_CMRG_GIAB/HEAD/.gitignore -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kcleal/SV_Benchmark_CMRG_GIAB/HEAD/README.md -------------------------------------------------------------------------------- /benchmark_result.CMRG.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kcleal/SV_Benchmark_CMRG_GIAB/HEAD/benchmark_result.CMRG.png -------------------------------------------------------------------------------- /benchmark_result.GIAB.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kcleal/SV_Benchmark_CMRG_GIAB/HEAD/benchmark_result.GIAB.png -------------------------------------------------------------------------------- /convert_severus.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kcleal/SV_Benchmark_CMRG_GIAB/HEAD/convert_severus.py -------------------------------------------------------------------------------- /environment.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kcleal/SV_Benchmark_CMRG_GIAB/HEAD/environment.yml -------------------------------------------------------------------------------- /fetch_data.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kcleal/SV_Benchmark_CMRG_GIAB/HEAD/fetch_data.sh -------------------------------------------------------------------------------- /nextflow.config: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kcleal/SV_Benchmark_CMRG_GIAB/HEAD/nextflow.config -------------------------------------------------------------------------------- /ont_results.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kcleal/SV_Benchmark_CMRG_GIAB/HEAD/ont_results.md -------------------------------------------------------------------------------- /pacbio_results.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kcleal/SV_Benchmark_CMRG_GIAB/HEAD/pacbio_results.md -------------------------------------------------------------------------------- /pipeline.nf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kcleal/SV_Benchmark_CMRG_GIAB/HEAD/pipeline.nf -------------------------------------------------------------------------------- /plot_benchmark.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kcleal/SV_Benchmark_CMRG_GIAB/HEAD/plot_benchmark.py --------------------------------------------------------------------------------