├── .gitignore ├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── R ├── dmrseq.R ├── getAnnot.R ├── helper_functions.R ├── internal_plotting_functions.R ├── meanDiff.R ├── plotDMRs.R ├── plotEmpiricalDistribution.R └── simDMRs.R ├── README.md ├── data ├── BS.chr21.rda ├── annot.chr21.rda └── dmrs.ex.rda ├── inst ├── CITATION ├── NEWS ├── scripts │ ├── get_BS.chr21.R │ ├── get_annot.chr21.R │ └── get_dmrs.ex.R └── sticker │ ├── dmrseq.png │ └── sticker.R ├── man ├── BS.chr21.Rd ├── annot.chr21.Rd ├── dmrPlotAnnotations.Rd ├── dmrs.ex.Rd ├── dmrseq.Rd ├── getAnnot.Rd ├── meanDiff.Rd ├── plotDMRs.Rd ├── plotEmpiricalDistribution.Rd └── simDMRs.Rd └── vignettes ├── dmrseq.Rmd └── dmrseqBib.bib /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kdkorthauer/dmrseq/HEAD/.gitignore -------------------------------------------------------------------------------- /DESCRIPTION: 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