├── .gitignore ├── LICENSE ├── README.md ├── faa_prediction.sh ├── model ├── model_unknown_80_07092023 │ ├── keras_metadata.pb │ ├── saved_model.pb │ └── variables │ │ ├── variables.data-00000-of-00001 │ │ └── variables.index └── model_unknown_80_07092023_lb.pkl ├── plm_vpf_predict_cpu.yml ├── plm_vpf_predict_gpu.yml ├── scripts ├── embed_faa.py ├── model_predict_fns.py ├── predict_function.py └── protbert_bfd_embed_utils.py ├── test.sh └── test ├── test.faa └── test_out_compare ├── prediction_heatmap.png ├── test_function_predictions.csv ├── test_functional_probabilities.csv └── test_protbert_bfd.pkl /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kellylab/viral-protein-function-plm/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- 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