├── .coveragerc ├── .github └── workflows │ ├── build_wheels.yml │ └── tests_and_lint.yml ├── .gitignore ├── .pydocstyle ├── .pydocstyle_test ├── .pylintrc ├── AUTHORS.md ├── CODE_OF_CONDUCT.md ├── CONTRIBUTING.md ├── LICENSE ├── README.md ├── codecov.yml ├── docs └── images │ ├── memory_benchmark.png │ ├── runtime_benchmark.png │ └── sequence_align.png ├── mypy.ini ├── pyproject.toml ├── rust ├── Cargo.toml └── src │ └── lib.rs ├── scripts ├── copyright_line_check.sh ├── lint.sh └── test.sh ├── setup.cfg ├── src └── sequence_align │ ├── __init__.py │ ├── pairwise.py │ └── py.typed └── tests ├── __init__.py ├── perf ├── __init__.py ├── expected_perf.yml ├── test_hirschberg.py ├── test_needleman_wunsch.py └── utils.py └── unit ├── __init__.py ├── test_alignment_score.py ├── test_hirschberg.py └── test_needleman_wunsch.py /.coveragerc: -------------------------------------------------------------------------------- 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