├── .gitignore ├── Makefile ├── README.md ├── data ├── stack-1.nii.gz ├── stack-2.nii.gz ├── stack-3.nii.gz ├── stack-4.nii.gz ├── stack-5.nii.gz ├── stack-6.nii.gz ├── stack-7.nii.gz └── stack-8.nii.gz ├── img ├── bare_stack-1.png ├── bare_stack-2.png ├── bare_stack-3.png ├── bare_stack-4.png ├── bare_stack-5.png ├── bare_stack-6.png ├── bare_stack-7.png ├── bare_stack-8.png ├── detection_stack-1.png ├── detection_stack-2.png ├── detection_stack-3.png ├── detection_stack-4.png ├── detection_stack-5.png ├── detection_stack-6.png ├── detection_stack-7.png ├── detection_stack-8.png ├── masked_stack-1.png ├── masked_stack-2.png ├── masked_stack-3.png ├── masked_stack-4.png ├── masked_stack-5.png ├── masked_stack-6.png ├── masked_stack-7.png ├── masked_stack-8.png ├── motion_corrected_volume.png ├── proba_stack-1.png ├── proba_stack-2.png ├── proba_stack-3.png ├── proba_stack-4.png ├── proba_stack-5.png ├── proba_stack-6.png ├── proba_stack-7.png ├── proba_stack-8.png ├── res_stack-1.png ├── res_stack-2.png ├── res_stack-3.png ├── res_stack-4.png ├── res_stack-5.png ├── res_stack-6.png ├── res_stack-7.png ├── res_stack-8.png ├── seg_stack-1.png ├── seg_stack-2.png ├── seg_stack-3.png ├── seg_stack-4.png ├── seg_stack-5.png ├── seg_stack-6.png ├── seg_stack-7.png ├── seg_stack-8.png ├── stack-1.png ├── stack-2.png ├── stack-3.png ├── stack-4.png ├── stack-5.png ├── stack-6.png ├── stack-7.png ├── stack-8.png ├── very_large_stack-1.png ├── very_large_stack-2.png ├── very_large_stack-3.png ├── very_large_stack-4.png ├── very_large_stack-5.png ├── very_large_stack-6.png ├── very_large_stack-7.png └── very_large_stack-8.png ├── model ├── mser_detector_0_linearSVM ├── mser_detector_0_linearSVM_01.npy ├── mser_detector_0_linearSVM_02.npy ├── mser_detector_0_linearSVM_03.npy ├── mser_detector_0_linearSVM_04.npy ├── mser_detector_0_linearSVM_05.npy └── vocabulary_0.npy ├── output_detection ├── stack-1.nii.gz ├── stack-2.nii.gz ├── stack-3.nii.gz ├── stack-4.nii.gz ├── stack-5.nii.gz ├── stack-6.nii.gz ├── stack-7.nii.gz └── stack-8.nii.gz ├── output_reconstruction └── motion_corrected_volume.nii.gz ├── output_segmentation ├── bare_stack-1.nii.gz ├── bare_stack-2.nii.gz ├── bare_stack-3.nii.gz ├── bare_stack-4.nii.gz ├── bare_stack-5.nii.gz ├── bare_stack-6.nii.gz ├── bare_stack-7.nii.gz ├── bare_stack-8.nii.gz ├── masked_stack-1.nii.gz ├── masked_stack-2.nii.gz ├── masked_stack-3.nii.gz ├── masked_stack-4.nii.gz ├── masked_stack-5.nii.gz ├── masked_stack-6.nii.gz ├── masked_stack-7.nii.gz ├── masked_stack-8.nii.gz ├── proba_stack-1.nii.gz ├── proba_stack-2.nii.gz ├── proba_stack-3.nii.gz ├── proba_stack-4.nii.gz ├── proba_stack-5.nii.gz ├── proba_stack-6.nii.gz ├── proba_stack-7.nii.gz ├── proba_stack-8.nii.gz ├── res_stack-1.nii.gz ├── res_stack-2.nii.gz ├── res_stack-3.nii.gz ├── res_stack-4.nii.gz ├── res_stack-5.nii.gz ├── res_stack-6.nii.gz ├── res_stack-7.nii.gz ├── res_stack-8.nii.gz ├── seg_stack-1.nii.gz ├── seg_stack-2.nii.gz ├── 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