├── .Rbuildignore ├── .github ├── .gitignore └── workflows │ └── check-bioc.yml ├── .gitignore ├── DESCRIPTION ├── Dockerfile ├── LICENSE ├── LICENSE.md ├── NAMESPACE ├── NEWS.md ├── R ├── basilisk.R ├── embedVelocity.R ├── gridVectors.R ├── plotVelocity.R ├── plotVelocityStream.R ├── scvelo.R ├── utils.R └── velociraptor-package.R ├── README.md ├── configure ├── configure.win ├── inst ├── envs │ ├── Intel_20240522.txt │ ├── Linux_20240523.txt │ ├── Linux_x86_64.yaml │ ├── Linux_x86_64_anaconda.yaml │ ├── M1.yaml │ ├── M1_20240522.txt │ ├── README.Rmd │ ├── Windows.yaml │ ├── Windows_20240524.txt │ ├── compare_scvelo_deps.R │ ├── format_scvelo_deps.R │ └── format_yaml_to_r.R └── vignettes_extras │ └── compare_velociraptor_runs.Rmd ├── man ├── embedVelocity.Rd ├── figures │ └── logo.png ├── gridVectors.Rd ├── plotVelocity.Rd ├── plotVelocityStream.Rd ├── scvelo.Rd └── velociraptor-package.Rd ├── pkgdown ├── _pkgdown.yml └── favicon │ ├── apple-touch-icon-120x120.png │ ├── 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