├── .Rbuildignore ├── .github ├── .gitignore ├── CODE_OF_CONDUCT.md ├── CONTRIBUTING.md ├── ISSUE_TEMPLATE │ └── issue_template.md ├── SUPPORT.md └── workflows │ ├── R-CMD-check.yaml │ ├── cancel.yaml │ ├── covr.yaml │ ├── pkgdown.yaml │ ├── pr-commands.yml │ ├── readme.yaml │ ├── release-checks-manual.yml │ ├── touchstone-comment.yaml │ ├── touchstone-receive.yaml │ └── update-citation-cff.yaml ├── .gitignore ├── .lintr ├── CITATION.cff ├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── NEWS.md ├── R ├── RcppExports.R ├── add_correlated_data.R ├── add_data.R ├── asserts.R ├── conditions.R ├── define_data.R ├── generate_correlated_data.R ├── generate_data.R ├── generate_dist.R ├── glue.R ├── group_data.R ├── internal_utility.R ├── missing_data.R ├── simstudy-package.R ├── utility.R └── zzz.R ├── README.Rmd ├── README.md ├── _pkgdown.yml ├── bench └── define.R ├── codecov.yml ├── codemeta.json ├── cran-comments.md ├── inst └── CITATION ├── man ├── addColumns.Rd ├── addCompRisk.Rd ├── addCondition.Rd ├── addCorData.Rd ├── addCorFlex.Rd ├── addCorGen.Rd ├── addDataDensity.Rd ├── addMarkov.Rd ├── addMultiFac.Rd ├── addPeriods.Rd ├── addSynthetic.Rd ├── betaGetShapes.Rd ├── blockDecayMat.Rd ├── blockExchangeMat.Rd ├── catProbs.Rd ├── defCondition.Rd ├── defData.Rd ├── defDataAdd.Rd ├── defMiss.Rd ├── defRead.Rd ├── defReadAdd.Rd ├── defReadCond.Rd ├── defRepeat.Rd ├── defRepeatAdd.Rd ├── defSurv.Rd ├── delColumns.Rd ├── distributions.Rd ├── gammaGetShapeRate.Rd ├── genCatFormula.Rd ├── genCluster.Rd ├── genCorData.Rd ├── genCorFlex.Rd ├── genCorGen.Rd ├── genCorMat.Rd ├── genCorOrdCat.Rd ├── genData.Rd ├── genDataDensity.Rd ├── genDummy.Rd ├── genFactor.Rd ├── genFormula.Rd ├── genMarkov.Rd ├── genMiss.Rd ├── genMixFormula.Rd ├── genMultiFac.Rd ├── genNthEvent.Rd ├── genObs.Rd ├── genOrdCat.Rd ├── genSpline.Rd ├── genSurv.Rd ├── genSynthetic.Rd ├── grouped.Rd ├── iccRE.Rd ├── logisticCoefs.Rd ├── mergeData.Rd ├── negbinomGetSizeProb.Rd ├── scenario_list.Rd ├── simstudy-deprecated.Rd ├── simstudy-package.Rd ├── survGetParams.Rd ├── survParamPlot.Rd ├── trimData.Rd ├── trtAssign.Rd ├── trtObserve.Rd ├── trtStepWedge.Rd ├── updateDef.Rd ├── updateDefAdd.Rd ├── viewBasis.Rd └── viewSplines.Rd ├── paper ├── paper.md └── simstudy.bib ├── src ├── RcppExports.cpp └── srcRcpp.cpp ├── tests ├── .lintr ├── testthat.R └── testthat │ ├── helper-gen_def.R │ ├── setup-general.R │ ├── setup-minimal.R │ ├── teardown-general.R │ ├── test-actual-distributions.R │ ├── test-add_data.R │ ├── test-asserts.R │ ├── test-conditions.R │ ├── test-define_data.R │ ├── test-generate_correlated_data.R │ ├── test-generate_data.R │ ├── test-generate_dist.R │ ├── test-glue.R │ ├── test-group_data.R │ ├── test-internal_utility.R │ ├── test-missing_data.R │ ├── test-survival.R │ └── test-utility.R ├── touchstone ├── .gitignore ├── config.json ├── footer.R ├── header.R └── script.R └── vignettes ├── clustered.Rmd ├── corelationmat.Rmd ├── correlated.Rmd ├── customdist.Rmd ├── 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