├── .dockerignore ├── .env.schema ├── .eslintignore ├── .eslintrc.json ├── .github ├── CODEOWNERS ├── pull_request_template.md └── workflows │ ├── create_pr_template.yml │ └── quality.yml ├── .gitignore ├── .gitmodules ├── .husky ├── commit-msg └── pre-commit ├── .jest └── identity-obj-proxy-esm.js ├── .npmrc ├── .storybook ├── main.js └── preview.js ├── Dockerfile ├── ELSindexesToChangeAfter ├── LICENSE ├── README.md ├── RELEASES.md ├── commitlint.config.js ├── config ├── env.js ├── getHttpsConfig.js ├── jest │ ├── babelTransform.js │ ├── cssTransform.js │ └── fileTransform.js ├── modules.js ├── paths.js ├── webpack.config.js ├── webpack │ └── persistentCache │ │ └── createEnvironmentHash.js └── webpackDevServer.config.js ├── cypress.config.ts ├── cypress ├── e2e │ ├── CavaticaButton │ │ ├── PageDataExploration_1.cy.ts │ │ ├── PageDataExploration_2.cy.ts │ │ ├── PageFile_1.cy.ts │ │ └── PageFile_2.cy.ts │ ├── Colonnes │ │ ├── TableauBiospecimens.cy.ts │ │ ├── TableauFiles.cy.ts │ │ ├── TableauFilesImaging.cy.ts │ │ ├── TableauParticipants.cy.ts │ │ ├── TableauStudies.cy.ts │ │ ├── TableauVariants.cy.ts │ │ ├── TableauVariantsSomatic.cy.ts │ │ ├── TableauxPageFile_1.cy.ts │ │ ├── TableauxPageFile_2.cy.ts │ │ ├── TableauxPageParticipant_1.cy.ts │ │ ├── TableauxPageParticipant_2.cy.ts │ │ ├── TableauxPageParticipant_3.cy.ts │ │ └── TableauxPageParticipant_4.cy.ts │ ├── Consultation │ │ ├── Landing.cy.ts │ │ ├── PageFile_1.cy.ts │ │ ├── PageFile_2.cy.ts │ │ ├── PageFile_3.cy.ts │ │ ├── PageFile_4.cy.ts │ │ ├── PageParticipant_1.cy.ts │ │ ├── PageParticipant_2.cy.ts │ │ ├── PageParticipant_3.cy.ts │ │ ├── PageParticipant_4.cy.ts │ │ ├── PageProfileSettings_1.cy.ts │ │ ├── PageProfileSettings_2.cy.ts │ │ ├── PageVariant_1.cy.ts │ │ ├── PageVariant_2.cy.ts │ │ ├── PageVariant_3.cy.ts │ │ ├── TableauBiospecimens_1.cy.ts │ │ ├── TableauBiospecimens_2.cy.ts │ │ ├── TableauBiospecimens_3.cy.ts │ │ ├── TableauFiles_1.cy.ts │ │ ├── TableauFiles_2.cy.ts │ │ ├── TableauFiles_3.cy.ts │ │ ├── TableauParticipants_1.cy.ts │ │ ├── TableauParticipants_2.cy.ts │ │ ├── TableauParticipants_3.cy.ts │ │ ├── TableauStudies_1.cy.ts │ │ ├── TableauStudies_2.cy.ts │ │ ├── TableauStudies_3.cy.ts │ │ ├── TableauVariantsSomatic_1.cy.ts │ │ ├── TableauVariantsSomatic_2.cy.ts │ │ ├── TableauVariants_1.cy.ts │ │ └── TableauVariants_2.cy.ts │ ├── Facettes │ │ ├── PageDataExploration_1.cy.ts │ │ ├── PageDataExploration_2.cy.ts │ │ ├── PageDataExploration_3.cy.ts │ │ ├── PageDataExploration_4.cy.ts │ │ ├── PageDataExploration_5.cy.ts │ │ ├── PageDataExploration_6.cy.ts │ │ ├── PageStudies.cy.ts │ │ ├── PageVariantsSomatic.cy.ts │ │ ├── PageVariants_1.cy.ts │ │ ├── PageVariants_2.cy.ts │ │ ├── PageVariants_3.cy.ts │ │ ├── PageVariants_4.cy.ts │ │ ├── PageVariants_5.cy.ts │ │ └── PageVariants_6.cy.ts │ ├── Filtres │ │ ├── PageDataExploration_1.cy.ts │ │ ├── PageDataExploration_2.cy.ts │ │ ├── PageDataExploration_3.cy.ts │ │ ├── PageVariantsSomatic_1.cy.ts │ │ ├── PageVariantsSomatic_2.cy.ts │ │ ├── PageVariantsSomatic_3.cy.ts │ │ ├── PageVariants_1.cy.ts │ │ ├── PageVariants_2.cy.ts │ │ └── PageVariants_3.cy.ts │ ├── ManifestButton │ │ ├── PageDataExploration_1.cy.ts │ │ ├── PageDataExploration_2.cy.ts │ │ ├── PageDataExploration_3.cy.ts │ │ ├── PageFile_1.cy.ts │ │ ├── PageFile_2.cy.ts │ │ └── PageFile_3.cy.ts │ ├── Navigation │ │ ├── Logout.cy.ts │ │ └── Pages.cy.ts │ ├── Recherche │ │ └── PageStudies.cy.ts │ ├── Requetes │ │ ├── ActionsSur0Requete.cy.ts │ │ ├── ActionsSur1Requete1Pilule.cy.ts │ │ ├── ActionsSur1Requete2Pilules.cy.ts │ │ ├── ActionsSur2Requetes.cy.ts │ │ ├── ActionsSurCombinaison.cy.ts │ │ └── ValidationParticipants.cy.ts │ ├── SaveSetButton │ │ ├── PageDataExploration_1.cy.ts │ │ ├── PageDataExploration_2.cy.ts │ │ ├── PageDataExploration_3.cy.ts │ │ ├── PageVariants.cy.ts │ │ └── PageVariantsSomatic.cy.ts │ ├── Telechargement │ │ ├── ClinicalDataPageParticipant_1.cy.ts │ │ ├── ClinicalDataPageParticipant_2.cy.ts │ │ ├── ClinicalDataTableauParticipants_1.cy.ts │ │ ├── ClinicalDataTableauParticipants_2.cy.ts │ │ ├── SampleDataPageParticipant.cy.ts │ │ ├── SampleDataTableauBiospecimens.cy.ts │ │ ├── TableauBiospecimens.cy.ts │ │ ├── TableauFiles.cy.ts │ │ ├── TableauParticipants.cy.ts │ │ ├── TableauStudies.cy.ts │ │ ├── TableauxPageFile_1.cy.ts │ │ ├── TableauxPageFile_2.cy.ts │ │ ├── TableauxPageParticipant_1.cy.ts │ │ ├── TableauxPageParticipant_2.cy.ts │ │ ├── TableauxPageParticipant_3.cy.ts │ │ └── TableauxPageParticipant_4.cy.ts │ ├── UploadList │ │ ├── PageDataExploration_1.cy.ts │ │ ├── PageDataExploration_2.cy.ts │ │ ├── PageDataExploration_3.cy.ts │ │ ├── PageVariants.cy.ts │ │ └── PageVariantsSomatic.cy.ts │ └── Widgets │ │ ├── AuthorizedStudies_1.cy.ts │ │ ├── AuthorizedStudies_2.cy.ts │ │ ├── BiospecimenRequests_1.cy.ts │ │ ├── BiospecimenRequests_2.cy.ts │ │ ├── BiospecimenRequests_3.cy.ts │ │ ├── CavaticaProjects_1.cy.ts │ │ ├── CavaticaProjects_2.cy.ts │ │ ├── KidsFirstFhirApi.cy.ts │ │ ├── SavedFilters_1.cy.ts │ │ ├── SavedFilters_2.cy.ts │ │ ├── SavedFilters_3.cy.ts │ │ ├── SavedSets_1.cy.ts │ │ ├── SavedSets_2.cy.ts │ │ ├── SavedSets_3.cy.ts │ │ ├── VariantWorkbench_1.cy.ts │ │ └── VariantWorkbench_2.cy.ts ├── fixtures │ ├── .gitkeep │ ├── DownloadClinicalData.json │ ├── DownloadClinicalDataFamily.json │ ├── DownloadManifest.json │ ├── DownloadManifestFamily.json │ ├── DownloadSampleData.json │ ├── ExportTableauBiospecimens.json │ ├── ExportTableauBiospecimensPageParticipant.json │ ├── ExportTableauDiagnosesPageParticipant.json │ ├── ExportTableauExpProcPageFile.json │ ├── ExportTableauExperimentalProcedurePageFile.json │ ├── ExportTableauFamilyPageParticipant.json │ ├── ExportTableauFiles.json │ ├── ExportTableauParticipants.json │ ├── ExportTableauParticipantsPageFile.json │ ├── ExportTableauPhenotypesPageParticipant.json │ └── ExportTableauStudies.json ├── plugins │ └── index.ts ├── support │ ├── commands.ts │ ├── createUUID.ts │ ├── e2e.js │ ├── index.d.ts │ └── utils.ts └── tsconfig.json ├── dev_tools └── nginx │ ├── README.md │ ├── nginx-prd.conf │ ├── nginx-qa.conf │ ├── prd.Dockerfile │ ├── prd.crt │ ├── prd.key │ ├── qa.Dockerfile │ ├── qa.crt │ └── qa.key ├── docker-compose.yaml ├── docs ├── deployment.md ├── dev.md ├── performance.md ├── portal.svg ├── portal_screenshot.png └── style.md ├── jest.config.ts ├── jest.setup.ts ├── package.json ├── public ├── _headers ├── _redirects ├── avatar-placeholder.png ├── favicon.ico ├── index.html ├── manifest.json └── robots.txt ├── scripts ├── build.js ├── start.js └── test.js ├── src ├── App.test.jsx ├── App.tsx ├── ProtectedRoute.tsx ├── auth │ └── keycloak-api │ │ ├── config.ts │ │ ├── index.ts │ │ ├── keycloak.ts │ │ ├── manager.ts │ │ └── utils.ts ├── common │ ├── charts.ts │ ├── constants.ts │ ├── downloader.ts │ ├── featureToggle.ts │ ├── fenceTypes.ts │ ├── queryBuilder.ts │ ├── sqonToName.ts │ ├── theme.ts │ ├── tokenTypes.ts │ └── types.ts ├── components │ ├── AgeCell │ │ ├── index.module.css │ │ └── index.tsx │ ├── Biospecimens │ │ └── DownloadDataButton │ │ │ └── index.tsx │ ├── Cavatica │ │ └── AnalyzeButton │ │ │ └── index.tsx │ ├── Cells │ │ └── index.tsx │ ├── ErrorBoundary.tsx │ ├── Icons │ │ ├── BiospecimenIcon.tsx │ │ ├── DiseaseIcon.tsx │ │ ├── ExternalIcon.tsx │ │ ├── ExternalLinkIcon.tsx │ │ ├── FrequencyIcon.tsx │ │ ├── GeneIcon.tsx │ │ ├── KidsFirstIcon.tsx │ │ ├── KidsFirstLoginIcon.tsx │ │ ├── LineStyleIcon.tsx │ │ ├── ListAddIcon.tsx │ │ ├── ListRemoveIcon.tsx │ │ ├── NciIcon.tsx │ │ ├── OpenInIcon.tsx │ │ ├── VariantBadgeIcons │ │ │ ├── HighBadgeIcon.tsx │ │ │ ├── LowBadgeIcon.tsx │ │ │ ├── ModerateBadgeIcon.tsx │ │ │ └── ModifierBadgeIcon.tsx │ │ └── index.tsx │ ├── Layout │ │ ├── Footer │ │ │ ├── index.module.css │ │ │ └── index.tsx │ │ ├── Header │ │ │ ├── HeaderLink │ │ │ │ ├── index.module.css │ │ │ │ └── index.tsx │ │ │ ├── index.module.css │ │ │ └── index.tsx │ │ ├── SideImage │ │ │ ├── index.module.css │ │ │ └── index.tsx │ │ ├── index.module.css │ │ └── index.tsx │ ├── ManeCell │ │ ├── index.module.css │ │ └── index.tsx │ ├── OutcomesAgeCells │ │ └── index.tsx │ ├── PublicLayout │ │ ├── Header │ │ │ ├── HeaderButton │ │ │ │ ├── index.module.css │ │ │ │ └── index.tsx │ │ │ ├── index.module.css │ │ │ └── index.tsx │ │ ├── LoginModal │ │ │ ├── index.module.css │ │ │ └── index.tsx │ │ ├── index.module.css │ │ └── index.tsx │ ├── assets │ │ ├── FHIR.png │ │ ├── analytics │ │ │ ├── newsletterWidget1.svg │ │ │ ├── newsletterWidget2.svg │ │ │ └── newsletterWidget3.svg │ │ ├── appache-zeppelin.png │ │ ├── cavatica-login-logo.png │ │ ├── chicago.png │ │ ├── chop.png │ │ ├── chu.png │ │ ├── facebook-f.svg │ │ ├── genetic_engineering.png │ │ ├── instagram.svg │ │ ├── jupyterLab.png │ │ ├── kf-portal-icons_biosamples.svg │ │ ├── kf-portal-icons_biospecimens_2.svg │ │ ├── kf-portal-icons_cloud_files.svg │ │ ├── kf-portal-icons_genomes.svg │ │ ├── kf-portal-icons_participants_3.svg │ │ ├── kf-portal-icons_studies_1.svg │ │ ├── kf-portal-icons_studies_2.svg │ │ ├── linkedin-in.svg │ │ ├── login-header.png │ │ ├── logo.svg │ │ ├── mainSideImage-alt.jpg │ │ ├── mainSideImage.jpg │ │ ├── memberHeader.png │ │ ├── pedcbioportal.png │ │ ├── unc.png │ │ ├── vanderbilt.png │ │ ├── velsera.png │ │ ├── x-twitter.svg │ │ └── youtube.svg │ ├── featureToggle │ │ └── NotificationBanner │ │ │ ├── index.module.css │ │ │ └── index.tsx │ ├── reports │ │ └── DownloadClinicalDataDropdown │ │ │ └── index.tsx │ ├── uiKit │ │ ├── DataRelease │ │ │ ├── index.module.css │ │ │ └── index.tsx │ │ ├── FilterList │ │ │ ├── CollapsePlaceHolderFacet │ │ │ │ ├── index.module.css │ │ │ │ └── index.tsx │ │ │ ├── CustomFilterContainer.tsx │ │ │ ├── CustomFilterSelector.tsx │ │ │ ├── Filters.module.css │ │ │ ├── GenericFilters.tsx │ │ │ ├── index.tsx │ │ │ └── types.ts │ │ ├── GradientAccent │ │ │ ├── index.module.css │ │ │ └── index.tsx │ │ ├── PopoverContentLink │ │ │ └── index.module.css │ │ ├── Spinner │ │ │ ├── index.module.css │ │ │ └── index.tsx │ │ ├── UnderlineLink │ │ │ └── index.module.css │ │ ├── reports │ │ │ ├── DownloadClinicalDataDropdown.tsx │ │ │ ├── DownloadFileManifestModal │ │ │ │ ├── FilesTable.tsx │ │ │ │ ├── index.module.css │ │ │ │ └── index.tsx │ │ │ ├── DownloadRequestAccessModal │ │ │ │ ├── FilesTable.tsx │ │ │ │ ├── index.module.css │ │ │ │ └── index.tsx │ │ │ └── TooMuchFilesAlert.tsx │ │ ├── search │ │ │ ├── GlobalSearch │ │ │ │ ├── Search │ │ │ │ │ ├── SearchAutocomplete │ │ │ │ │ │ └── index.tsx │ │ │ │ │ └── index.tsx │ │ │ │ ├── SquareLabel │ │ │ │ │ ├── index.module.css │ │ │ │ │ └── index.tsx │ │ │ │ ├── index.tsx │ │ │ │ └── utils.tsx │ │ │ ├── SearchLabel │ │ │ │ ├── index.module.css │ │ │ │ └── index.tsx │ │ │ └── SetSearch │ │ │ │ ├── index.module.css │ │ │ │ └── index.tsx │ │ └── select │ │ │ └── SelectItem │ │ │ ├── index.module.css │ │ │ └── index.tsx │ └── utils │ │ ├── ConditionalWrapper │ │ └── index.tsx │ │ ├── NotificationContextHolder │ │ ├── index.module.css │ │ └── index.tsx │ │ └── filterUtils.tsx ├── graphql │ ├── biospecimens │ │ ├── actions.ts │ │ ├── models.ts │ │ ├── queries.ts │ │ └── useBiospecimenResolvedSqon.tsx │ ├── constants.ts │ ├── files │ │ ├── actions.ts │ │ ├── models.ts │ │ ├── queries.ts │ │ └── useFileResolvedSqon.tsx │ ├── genes │ │ └── queries.ts │ ├── models.ts │ ├── participants │ │ ├── actions.ts │ │ ├── models.ts │ │ ├── queries.ts │ │ └── useParticipantResolvedSqon.tsx │ ├── queries.ts │ ├── quickFilter │ │ └── queries.ts │ ├── reports │ │ └── queries.ts │ ├── studies │ │ ├── actions.ts │ │ ├── models.ts │ │ └── queries.ts │ ├── summary │ │ ├── models.ts │ │ └── queries.ts │ ├── utils │ │ ├── Filters.tsx │ │ ├── helpers.test.ts │ │ ├── helpers.ts │ │ └── nameTransformer.tsx │ └── variants │ │ ├── actions.ts │ │ ├── models.ts │ │ └── queries.ts ├── helpers │ ├── EnvVariables.ts │ ├── index.ts │ ├── notebook.ts │ └── roles.ts ├── hooks │ ├── graphql │ │ ├── type.ts │ │ ├── useGetAggregations.ts │ │ ├── useGetExtendedMappings.ts │ │ └── useLazyResultQuery.ts │ ├── useApi.tsx │ ├── useFeatureToggle.tsx │ ├── useInterval.tsx │ ├── usePrevious.tsx │ ├── useQBStateWithSavedFilters.tsx │ └── useQueryParams.tsx ├── index.css ├── index.js ├── locales │ ├── en.json │ ├── en.ts │ └── index.ts ├── middleware │ └── AuthMiddleware.tsx ├── provider │ ├── ApolloProvider.tsx │ ├── ContextProvider.tsx │ ├── KeycloakProvider.tsx │ └── types.ts ├── react-app-env.d.ts ├── services │ ├── analytics.ts │ ├── api │ │ ├── arranger │ │ │ ├── index.ts │ │ │ └── models.ts │ │ ├── cavatica │ │ │ ├── index.ts │ │ │ └── models.ts │ │ ├── fence │ │ │ ├── index.ts │ │ │ └── models.ts │ │ ├── index.tsx │ │ ├── notebook │ │ │ ├── index.ts │ │ │ └── model.ts │ │ ├── reports │ │ │ ├── index.ts │ │ │ └── models.ts │ │ ├── savedFilter │ │ │ ├── index.ts │ │ │ └── models.ts │ │ ├── savedSet │ │ │ ├── index.ts │ │ │ └── models.ts │ │ └── user │ │ │ ├── index.ts │ │ │ └── models.ts │ └── initUsersnap.ts ├── store │ ├── community │ │ ├── index.ts │ │ ├── selector.ts │ │ ├── slice.ts │ │ ├── thunks.ts │ │ └── types.ts │ ├── fences │ │ ├── index.ts │ │ ├── selector.ts │ │ ├── slice.ts │ │ ├── thunks.ts │ │ └── types.ts │ ├── global │ │ ├── index.ts │ │ ├── selector.ts │ │ ├── slice.ts │ │ ├── thunks.ts │ │ └── types.ts │ ├── index.tsx │ ├── notebook │ │ ├── index.ts │ │ ├── selector.ts │ │ ├── slice.ts │ │ ├── thunks.ts │ │ └── types.ts │ ├── passport │ │ ├── index.ts │ │ ├── metadata.ts │ │ ├── selector.ts │ │ ├── slice.ts │ │ ├── thunks.test.ts │ │ ├── thunks.ts │ │ └── type.ts │ ├── remote │ │ ├── index.ts │ │ ├── selector.ts │ │ ├── slice.ts │ │ └── types.ts │ ├── report │ │ ├── index.ts │ │ ├── selector.ts │ │ ├── slice.ts │ │ ├── thunks.tsx │ │ └── types.ts │ ├── savedFilter │ │ ├── index.ts │ │ ├── selector.ts │ │ ├── slice.ts │ │ ├── thunks.ts │ │ └── types.ts │ ├── savedSet │ │ ├── index.ts │ │ ├── selector.ts │ │ ├── slice.ts │ │ ├── thunks.ts │ │ └── types.ts │ ├── types.ts │ ├── user │ │ ├── index.ts │ │ ├── selector.ts │ │ ├── slice.ts │ │ ├── thunks.test.tsx │ │ ├── thunks.ts │ │ ├── thunksTestData.ts │ │ └── types.ts │ ├── utils.ts │ └── venn │ │ ├── index.ts │ │ ├── selector.ts │ │ ├── slice.ts │ │ ├── thunks.ts │ │ └── types.ts ├── style │ ├── statusColors.ts │ └── themes │ │ └── kids-first │ │ ├── antd-kids-first-theme.less │ │ ├── antd │ │ ├── alerts.less │ │ ├── buttons.less │ │ ├── collapses.less │ │ ├── descriptions.less │ │ ├── dropdowns.less │ │ ├── form.less │ │ ├── input.less │ │ ├── list.less │ │ ├── modal.less │ │ ├── notifications.less │ │ ├── pagination.less │ │ ├── popover.less │ │ ├── results.less │ │ ├── selects.less │ │ ├── tables.less │ │ ├── tabs.less │ │ └── tags.less │ │ ├── colors.less │ │ ├── fonts │ │ ├── Rubik.woff2 │ │ └── SourceSansPro.woff2 │ │ └── main.css ├── tests │ ├── mocks │ │ └── matchMedia.mock.js │ └── setupTests.tsx ├── utils │ ├── dataFiles.ts │ ├── dates.ts │ ├── fieldMapper.ts │ ├── formatFileSize.ts │ ├── helper.test.ts │ ├── helper.ts │ ├── history.js │ ├── jwt.ts │ ├── object.ts │ ├── query.ts │ ├── routes.ts │ ├── string.ts │ ├── tables.ts │ └── translation.ts └── views │ ├── Analytics │ ├── NewsletterWidget │ │ ├── index.module.css │ │ └── index.tsx │ ├── SetOperations │ │ ├── NoSet.tsx │ │ ├── SelectSets.tsx │ │ ├── index.module.css │ │ ├── index.tsx │ │ └── utils.tsx │ ├── SetOperationsWidget │ │ ├── index.module.css │ │ └── index.tsx │ ├── index.module.css │ └── index.tsx │ ├── Community │ ├── Member │ │ ├── index.module.css │ │ └── index.tsx │ ├── components │ │ └── MemberCard │ │ │ ├── index.module.css │ │ │ └── index.tsx │ ├── constants.ts │ ├── index.module.css │ ├── index.tsx │ └── utils.ts │ ├── Dashboard │ ├── components │ │ ├── CardConnectPlaceholder │ │ │ ├── index.module.css │ │ │ └── index.tsx │ │ ├── CardErrorPlaceHolder │ │ │ └── index.tsx │ │ ├── CardHeader │ │ │ ├── index.module.css │ │ │ └── index.tsx │ │ └── DashboardCards │ │ │ ├── AuthorizedStudies │ │ │ ├── index.test.tsx │ │ │ └── index.tsx │ │ │ ├── BiospecimenRequests │ │ │ └── index.tsx │ │ │ ├── CaringForChildrenWithCovid │ │ │ ├── index.module.css │ │ │ └── index.tsx │ │ │ ├── Cavatica │ │ │ └── index.tsx │ │ │ ├── DataExplorationLinks │ │ │ ├── LinkBox │ │ │ │ ├── index.module.css │ │ │ │ └── index.tsx │ │ │ ├── index.module.css │ │ │ └── index.tsx │ │ │ ├── Notebook │ │ │ ├── index.module.css │ │ │ └── index.tsx │ │ │ ├── SavedFilters │ │ │ ├── EditModal │ │ │ │ ├── index.module.css │ │ │ │ └── index.tsx │ │ │ ├── ListItem │ │ │ │ ├── index.module.css │ │ │ │ └── index.tsx │ │ │ ├── index.module.css │ │ │ └── index.tsx │ │ │ ├── SavedSets │ │ │ ├── CreateEditModal │ │ │ │ ├── index.module.css │ │ │ │ └── index.tsx │ │ │ ├── ListItem │ │ │ │ ├── index.module.css │ │ │ │ └── index.tsx │ │ │ ├── index.module.css │ │ │ └── index.tsx │ │ │ ├── index.module.css │ │ │ └── index.tsx │ ├── index.module.css │ └── index.tsx │ ├── DataExploration │ ├── components │ │ ├── BiospecimenSearch.tsx │ │ ├── BiospecimenSetSearch.tsx │ │ ├── FileSearch.tsx │ │ ├── FileSetSearch.tsx │ │ ├── PageContent │ │ │ ├── index.module.css │ │ │ ├── index.tsx │ │ │ └── tabs │ │ │ │ ├── Biospecimens │ │ │ │ ├── index.module.css │ │ │ │ ├── index.tsx │ │ │ │ └── utils.tsx │ │ │ │ ├── DataFiles │ │ │ │ ├── ColumnSelectorHeader │ │ │ │ │ ├── index.module.css │ │ │ │ │ └── index.tsx │ │ │ │ ├── index.module.css │ │ │ │ ├── index.test.tsx │ │ │ │ └── index.tsx │ │ │ │ ├── Participants │ │ │ │ ├── index.module.css │ │ │ │ └── index.tsx │ │ │ │ └── Summary │ │ │ │ ├── AgeAtDiagnosisGraphCard │ │ │ │ └── index.tsx │ │ │ │ ├── DataCategoryGraphCard │ │ │ │ └── index.tsx │ │ │ │ ├── DataTypeGraphCard │ │ │ │ └── index.tsx │ │ │ │ ├── DemographicGraphCard │ │ │ │ ├── index.module.css │ │ │ │ └── index.tsx │ │ │ │ ├── MostFrequentDiagnosisGraphCard │ │ │ │ └── index.tsx │ │ │ │ ├── MostFrequentPhenotypesGraphCard │ │ │ │ └── index.tsx │ │ │ │ ├── SampleType │ │ │ │ └── index.tsx │ │ │ │ ├── StudiesGraphCard │ │ │ │ ├── index.module.css │ │ │ │ └── index.tsx │ │ │ │ ├── index.module.css │ │ │ │ ├── index.tsx │ │ │ │ └── utils │ │ │ │ └── grid.tsx │ │ ├── ParticipantSearch.tsx │ │ ├── ParticipantSetSearch.tsx │ │ ├── SetsManagementDropdown │ │ │ ├── AddRemoveSaveSetModal.tsx │ │ │ ├── UserSetForm │ │ │ │ ├── index.module.css │ │ │ │ └── index.tsx │ │ │ ├── index.module.css │ │ │ └── index.tsx │ │ ├── TreeFacet │ │ │ ├── TreeFacetModal.tsx │ │ │ ├── TreeNodeTitle.tsx │ │ │ ├── helpers.tsx │ │ │ ├── index.module.css │ │ │ └── index.tsx │ │ └── UploadIds │ │ │ ├── BiospecimenUploadIds.tsx │ │ │ ├── EntityUploadIds │ │ │ ├── index.module.css │ │ │ └── index.tsx │ │ │ ├── FileUploadIds.tsx │ │ │ ├── ParticipantUploadIds.tsx │ │ │ └── utils.tsx │ ├── index.module.css │ ├── index.tsx │ └── utils │ │ ├── OntologyTree.tsx │ │ ├── PhenotypeStore.ts │ │ ├── constant.ts │ │ ├── helper.tsx │ │ ├── quickFilter.tsx │ │ └── selectionSqon.ts │ ├── Error │ ├── index.module.css │ └── index.tsx │ ├── FakeStorybook │ └── index.tsx │ ├── FenceRedirect │ └── index.tsx │ ├── FileEntity │ ├── BiospecimenTable │ │ ├── index.module.css │ │ └── index.tsx │ ├── ExperimentalProcedure │ │ ├── ExperimentalProcedureTable │ │ │ └── index.tsx │ │ └── index.tsx │ ├── Imaging │ │ └── index.tsx │ ├── SummaryHeader │ │ ├── index.module.css │ │ └── index.tsx │ ├── Title │ │ ├── index.module.css │ │ └── index.tsx │ ├── index.module.css │ ├── index.tsx │ └── utils │ │ ├── anchorLinks.tsx │ │ ├── biospecimens.tsx │ │ ├── getDataAccessItems.tsx │ │ ├── getDataTypeItems.tsx │ │ ├── getExperimentalProcedureColumns.tsx │ │ ├── getExperimentalProcedureItems.tsx │ │ ├── getImagingItems.tsx │ │ └── getSummaryItems.tsx │ ├── LandingPage │ ├── ChartsSection │ │ ├── Charts │ │ │ ├── Demographic │ │ │ │ ├── index.module.css │ │ │ │ └── index.tsx │ │ │ ├── Mondo │ │ │ │ ├── index.module.css │ │ │ │ └── index.tsx │ │ │ ├── index.module.css │ │ │ └── index.tsx │ │ ├── Grid │ │ │ ├── index.module.css │ │ │ └── index.tsx │ │ ├── index.module.css │ │ └── index.tsx │ ├── CollaboratorSection │ │ ├── CollaboratorCard │ │ │ ├── index.module.css │ │ │ └── index.tsx │ │ ├── index.module.css │ │ └── index.tsx │ ├── Components │ │ ├── LandingPageButton │ │ │ ├── index.module.css │ │ │ └── index.tsx │ │ ├── LandingPageParagraph │ │ │ ├── index.module.css │ │ │ └── index.tsx │ │ └── LandingPageTitle │ │ │ ├── index.module.css │ │ │ └── index.tsx │ ├── Footer │ │ ├── About │ │ │ ├── index.module.css │ │ │ └── index.tsx │ │ ├── Card │ │ │ ├── index.module.css │ │ │ └── index.tsx │ │ ├── Socials │ │ │ ├── index.module.css │ │ │ └── index.tsx │ │ ├── index.module.css │ │ └── index.tsx │ ├── StudiesSection │ │ ├── Carousel │ │ │ ├── Card │ │ │ │ ├── index.module.css │ │ │ │ └── index.tsx │ │ │ ├── index.module.css │ │ │ └── index.tsx │ │ ├── Studies │ │ │ ├── index.module.css │ │ │ └── index.tsx │ │ ├── index.module.css │ │ └── index.tsx │ ├── TopBanner │ │ ├── GradientHeader │ │ │ ├── index.module.css │ │ │ └── index.tsx │ │ ├── LoginForm │ │ │ ├── index.module.css │ │ │ └── index.tsx │ │ ├── index.module.css │ │ └── index.tsx │ ├── index.module.css │ └── index.tsx │ ├── ParticipantEntity │ ├── BiospecimenTable │ │ ├── CollectionIdLink.tsx │ │ └── index.tsx │ ├── DiagnosisTable │ │ ├── MondoParticipantCount.tsx │ │ └── index.tsx │ ├── FamilyTable │ │ ├── FamilyIdLink.tsx │ │ └── index.tsx │ ├── FileTable │ │ └── index.tsx │ ├── PhenotypeTable │ │ ├── HpoParticipantCount.tsx │ │ └── index.tsx │ ├── SummaryHeader │ │ ├── index.module.css │ │ └── index.tsx │ ├── Title │ │ └── index.tsx │ ├── index.module.css │ ├── index.tsx │ ├── styles │ │ └── styles.module.css │ └── utils │ │ ├── anchorLinks.tsx │ │ ├── biospecimens.tsx │ │ ├── files.tsx │ │ ├── getDiagnosisColumns.tsx │ │ ├── getPhenotypeColumns.tsx │ │ ├── getProfileItems.tsx │ │ └── summary.tsx │ ├── Profile │ ├── Settings │ │ ├── cards │ │ │ ├── BaseCard.tsx │ │ │ ├── BaseForm.tsx │ │ │ ├── DeleteCard │ │ │ │ └── index.module.css │ │ │ ├── Identification │ │ │ │ ├── ToggleProfileVisibility │ │ │ │ │ ├── index.module.css │ │ │ │ │ └── index.tsx │ │ │ │ ├── index.module.css │ │ │ │ └── index.tsx │ │ │ ├── Location │ │ │ │ └── index.tsx │ │ │ ├── ResearchInterests │ │ │ │ ├── index.module.css │ │ │ │ └── index.tsx │ │ │ ├── RoleAndAffiliation │ │ │ │ └── index.tsx │ │ │ └── form.module.css │ │ ├── index.module.css │ │ └── index.tsx │ └── View │ │ ├── index.module.css │ │ └── index.tsx │ ├── PublicStudies │ ├── PageContent │ │ ├── index.module.css │ │ └── index.tsx │ ├── index.module.css │ ├── index.tsx │ └── utils.tsx │ ├── Studies │ ├── components │ │ ├── PageContent │ │ │ ├── index.module.css │ │ │ └── index.tsx │ │ └── SideBarFacet │ │ │ ├── index.module.css │ │ │ └── index.tsx │ ├── index.module.css │ ├── index.tsx │ └── utils │ │ ├── constant.ts │ │ └── helper.ts │ ├── VariantEntity │ ├── index.module.css │ ├── index.tsx │ └── utils │ │ ├── anchorMenu.tsx │ │ ├── consequence.tsx │ │ ├── frequency.tsx │ │ ├── pathogenicity.tsx │ │ └── summary.tsx │ ├── VariantSomaticEntity │ ├── index.module.css │ ├── index.tsx │ └── utils │ │ └── summary.tsx │ ├── Variants │ ├── components │ │ ├── GeneUploadIds │ │ │ ├── index.module.css │ │ │ └── index.tsx │ │ ├── PageContent │ │ │ ├── VariantsTable │ │ │ │ ├── index.module.css │ │ │ │ ├── index.tsx │ │ │ │ └── utils.tsx │ │ │ ├── index.module.css │ │ │ └── index.tsx │ │ └── VariantGeneSearch │ │ │ ├── OptionItem │ │ │ ├── index.module.css │ │ │ └── index.tsx │ │ │ └── index.tsx │ ├── index.module.css │ ├── index.tsx │ └── utils │ │ └── constants.ts │ └── VariantsSomatic │ ├── components │ ├── GeneUploadIds │ │ ├── index.module.css │ │ └── index.tsx │ ├── HeaderDropdown │ │ └── index.tsx │ └── PageContent │ │ ├── VariantsTable │ │ ├── index.module.css │ │ ├── index.tsx │ │ └── utils.tsx │ │ ├── index.module.css │ │ └── index.tsx │ ├── index.module.css │ ├── index.tsx │ └── utils │ └── constants.ts ├── static.conf └── tsconfig.json /.dockerignore: 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