├── .Rbuildignore ├── .gitignore ├── .travis.yml ├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── R ├── plotting.R └── pseudogp.R ├── README.md ├── data ├── le_fit.rda ├── monocle_le.rda ├── monocle_pca.rda └── monocle_tsne.rda ├── inst └── pseudogp.stan ├── man ├── fitPseudotime.Rd ├── le_fit.Rd ├── monocle_le.Rd ├── monocle_pca.Rd ├── monocle_tsne.Rd ├── plotDiagnostic.Rd ├── posteriorBoxplot.Rd ├── posteriorCurvePlot.Rd ├── posterior_mean_curve.Rd └── standardize.Rd ├── pseudogp.Rproj ├── tests ├── testthat.R └── testthat │ └── test_pseudogp.R └── vignettes └── pseudogp-vignette.Rmd /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kieranrcampbell/pseudogp/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 1 | .Rproj.user 2 | .Rhistory 3 | .RData 4 | inst/doc 5 | 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