├── .Rbuildignore ├── .gitignore ├── .travis.yml ├── DESCRIPTION ├── NAMESPACE ├── R ├── mle.R ├── switchde.R ├── zi.R └── zi_constant.R ├── README.md ├── data ├── ex_pseudotime.rda └── synth_gex.rda ├── inst ├── NEWS ├── example.png └── example_sigmoid.png ├── man ├── ex_pseudotime.Rd ├── example_sigmoid.Rd ├── extract_pars.Rd ├── fit_nzi_model.Rd ├── fit_zi_model.Rd ├── sanitise_inputs.Rd ├── sigmoid.Rd ├── switchde.Rd ├── switchplot.Rd └── synth_gex.Rd ├── tests ├── testthat.R └── testthat │ └── test_switchde.R └── vignettes └── switchde_vignette.Rmd /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kieranrcampbell/switchde/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 1 | .Rproj.user 2 | .Rhistory 3 | .RData 4 | inst/doc 5 | 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