├── .DS_Store ├── LICENSE ├── README.md ├── Rmd ├── resources │ ├── bmj.csl │ └── library.bib ├── social_distancing_wuhan_report.Rmd └── social_distancing_wuhan_report.html ├── codes ├── .DS_Store ├── 0_master.r ├── 1_loadData.r ├── 2_simOutbreak_ncov_SEIR.r ├── 2_simOutbreak_ncov_SEIcIscR.r ├── function_modelSEIcIscR.r └── function_postprocessing.r ├── data ├── .DS_Store ├── china_pop_age_structure.csv ├── contacts.Rdata ├── contacts_china.rdata ├── out_R0.csv ├── out_date.csv ├── wuhan_pop_case_dist.csv └── wuhanpop.csv ├── outputs ├── .DS_Store ├── SEIR │ └── .DS_Store └── SEIcIscR │ └── .DS_Store └── plots ├── fig_1.png ├── fig_3.png └── fig_4.png /.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kieshaprem/covid19-agestructureSEIR-wuhan-social-distancing/HEAD/.DS_Store -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kieshaprem/covid19-agestructureSEIR-wuhan-social-distancing/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kieshaprem/covid19-agestructureSEIR-wuhan-social-distancing/HEAD/README.md -------------------------------------------------------------------------------- /Rmd/resources/bmj.csl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kieshaprem/covid19-agestructureSEIR-wuhan-social-distancing/HEAD/Rmd/resources/bmj.csl -------------------------------------------------------------------------------- /Rmd/resources/library.bib: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kieshaprem/covid19-agestructureSEIR-wuhan-social-distancing/HEAD/Rmd/resources/library.bib -------------------------------------------------------------------------------- /Rmd/social_distancing_wuhan_report.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kieshaprem/covid19-agestructureSEIR-wuhan-social-distancing/HEAD/Rmd/social_distancing_wuhan_report.Rmd -------------------------------------------------------------------------------- /Rmd/social_distancing_wuhan_report.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kieshaprem/covid19-agestructureSEIR-wuhan-social-distancing/HEAD/Rmd/social_distancing_wuhan_report.html -------------------------------------------------------------------------------- /codes/.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kieshaprem/covid19-agestructureSEIR-wuhan-social-distancing/HEAD/codes/.DS_Store -------------------------------------------------------------------------------- /codes/0_master.r: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kieshaprem/covid19-agestructureSEIR-wuhan-social-distancing/HEAD/codes/0_master.r -------------------------------------------------------------------------------- /codes/1_loadData.r: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kieshaprem/covid19-agestructureSEIR-wuhan-social-distancing/HEAD/codes/1_loadData.r -------------------------------------------------------------------------------- /codes/2_simOutbreak_ncov_SEIR.r: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kieshaprem/covid19-agestructureSEIR-wuhan-social-distancing/HEAD/codes/2_simOutbreak_ncov_SEIR.r -------------------------------------------------------------------------------- /codes/2_simOutbreak_ncov_SEIcIscR.r: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kieshaprem/covid19-agestructureSEIR-wuhan-social-distancing/HEAD/codes/2_simOutbreak_ncov_SEIcIscR.r -------------------------------------------------------------------------------- /codes/function_modelSEIcIscR.r: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kieshaprem/covid19-agestructureSEIR-wuhan-social-distancing/HEAD/codes/function_modelSEIcIscR.r -------------------------------------------------------------------------------- /codes/function_postprocessing.r: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kieshaprem/covid19-agestructureSEIR-wuhan-social-distancing/HEAD/codes/function_postprocessing.r -------------------------------------------------------------------------------- /data/.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kieshaprem/covid19-agestructureSEIR-wuhan-social-distancing/HEAD/data/.DS_Store -------------------------------------------------------------------------------- /data/china_pop_age_structure.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kieshaprem/covid19-agestructureSEIR-wuhan-social-distancing/HEAD/data/china_pop_age_structure.csv -------------------------------------------------------------------------------- /data/contacts.Rdata: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kieshaprem/covid19-agestructureSEIR-wuhan-social-distancing/HEAD/data/contacts.Rdata -------------------------------------------------------------------------------- /data/contacts_china.rdata: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kieshaprem/covid19-agestructureSEIR-wuhan-social-distancing/HEAD/data/contacts_china.rdata -------------------------------------------------------------------------------- /data/out_R0.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kieshaprem/covid19-agestructureSEIR-wuhan-social-distancing/HEAD/data/out_R0.csv -------------------------------------------------------------------------------- /data/out_date.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kieshaprem/covid19-agestructureSEIR-wuhan-social-distancing/HEAD/data/out_date.csv -------------------------------------------------------------------------------- /data/wuhan_pop_case_dist.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kieshaprem/covid19-agestructureSEIR-wuhan-social-distancing/HEAD/data/wuhan_pop_case_dist.csv -------------------------------------------------------------------------------- /data/wuhanpop.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kieshaprem/covid19-agestructureSEIR-wuhan-social-distancing/HEAD/data/wuhanpop.csv -------------------------------------------------------------------------------- /outputs/.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kieshaprem/covid19-agestructureSEIR-wuhan-social-distancing/HEAD/outputs/.DS_Store -------------------------------------------------------------------------------- /outputs/SEIR/.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kieshaprem/covid19-agestructureSEIR-wuhan-social-distancing/HEAD/outputs/SEIR/.DS_Store -------------------------------------------------------------------------------- /outputs/SEIcIscR/.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kieshaprem/covid19-agestructureSEIR-wuhan-social-distancing/HEAD/outputs/SEIcIscR/.DS_Store -------------------------------------------------------------------------------- /plots/fig_1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kieshaprem/covid19-agestructureSEIR-wuhan-social-distancing/HEAD/plots/fig_1.png -------------------------------------------------------------------------------- /plots/fig_3.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kieshaprem/covid19-agestructureSEIR-wuhan-social-distancing/HEAD/plots/fig_3.png -------------------------------------------------------------------------------- /plots/fig_4.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kieshaprem/covid19-agestructureSEIR-wuhan-social-distancing/HEAD/plots/fig_4.png --------------------------------------------------------------------------------