├── LICENSE ├── README.md ├── Snakefile ├── cluster.json ├── config.yml ├── environment.yaml ├── envs ├── SV.yml └── prepBED.yml ├── input └── id_test.bed ├── models ├── 2021scale.RDS ├── README ├── cdelmodelRF.RDS ├── cinsmodelRF.RDS ├── conversion_table_PHRED_DEL.txt ├── conversion_table_PHRED_DUP.txt ├── conversion_table_PHRED_INS.txt ├── hdelmodelRF.RDS ├── hg19ToHg38.over.chain.gz └── hinsmodelRF.RDS ├── output └── Example_test_score.bed └── scripts ├── PLIextract.R ├── annotateHIC.R └── scoring.R /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kircherlab/CADD-SV/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kircherlab/CADD-SV/HEAD/README.md -------------------------------------------------------------------------------- /Snakefile: 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