├── .Rbuildignore ├── .gitignore ├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── NEWS ├── R ├── dash.R ├── data.R ├── get_logo_heights.R ├── get_plot.R ├── get_viewport_logo.R ├── ic_computer.R ├── letters.R ├── logo_pssm.R ├── logomaker.R ├── logomaker_format_input.R ├── makemylogo.R ├── neg_ic_computer.R ├── nlogomaker.R ├── optmeth.R ├── plogomaker.R └── pseudocount_adjust.R ├── README.html ├── README.md ├── data ├── EBF1_disc1.rda ├── ELF1.rda ├── N_Glycosyl_sequences.rda ├── UMI.rda ├── aRxiv.rda ├── consensus_PWM_codons.rda ├── himalayan_fauna.rda ├── histone_marks.rda ├── mutation_sig.rda ├── pssm.rda └── seqlogo_example.rda ├── demo ├── 00Index ├── test_gallery_logomaker.R ├── test_get_logo_heights.R └── test_logomaker.R ├── inst ├── CITATION └── logolas.pdf ├── man ├── EBF1_disc1.Rd ├── ELF1.Rd ├── N_Glycosyl_sequences.Rd ├── UMI.Rd ├── aRxiv.Rd ├── consensus_PWM_codons.Rd ├── get_logo_heights.Rd ├── get_plot.Rd ├── get_viewport_logo.Rd ├── himalayan_fauna.Rd ├── histone_marks.Rd ├── logo_pssm.Rd ├── logomaker.Rd ├── logomaker_format_input.Rd ├── makemylogo.Rd ├── mutation_sig.Rd ├── nlogomaker.Rd ├── plogomaker.Rd ├── pseudocount_adjust.Rd ├── pssm.Rd └── seqlogo_example.Rd ├── utils ├── figures │ ├── fig0.pdf │ ├── fig0.png │ ├── fig1.pdf │ ├── fig1.png │ ├── fig2.pdf │ ├── fig2.png │ ├── fig3.pdf │ ├── fig3.png │ ├── fig4.pdf │ ├── fig4.png │ ├── misc2.key │ ├── misc2.pdf │ └── misc2.png ├── mut_test.R └── temp.R └── vignettes └── Logolas.Rmd /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kkdey/Logolas/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/kkdey/Logolas/HEAD/.gitignore -------------------------------------------------------------------------------- /DESCRIPTION: 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